Gcaud331.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud331.t1
Unique NameGcaud331.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length177
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2556_length_5321_cov_3.193881contigNODE_2556_length_5321_cov_3.193881:4628..5158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704664.1
Max annot lvl2759|Eukaryota
KEGG koko:K08901
KEGG Pathwayko00195,ko01100,map00195,map01100
Evalue3.24e-20
EggNOG OGs2E8QV@1|root,2SF67@2759|Eukaryota
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud331Gcaud331Gracilaria caudata M_176_S67 malegeneNODE_2556_length_5321_cov_3.193881 4628..5158 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud331.t1.stop1Gcaud331.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2556_length_5321_cov_3.193881 4628..4630 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud331.t1.CDS1Gcaud331.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2556_length_5321_cov_3.193881 4628..5158 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud331.t1.exon1Gcaud331.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2556_length_5321_cov_3.193881 4628..5158 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud331.t1.start1Gcaud331.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2556_length_5321_cov_3.193881 5156..5158 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud331.t1Gcaud331.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2556_length_5321_cov_3.193881 4628..5158 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud331.t1 ID=Gcaud331.t1|Name=Gcaud331.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=177bp
MSAAPVSRRQALLGGAALLTAMGLAPFATLAKSGDSPKISVFGVGGASSP
FDSGIQTGGKVQYKPFGEDEVAVFKRIVDDSKERLIGSADSIKGKNWEDI
RSQIRLQSDLRKVQLTINANMPDKKSEDKAAKAYFAFKTDIEKLDQACVQ
KNQAGAYKAYNAALKSLAAWQDTTGY*
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spliced messenger RNA

>Gcaud331.t1 ID=Gcaud331.t1|Name=Gcaud331.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=531bp|location=Sequence derived from alignment at NODE_2556_length_5321_cov_3.193881:4628..5158- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGCAGCGCCCGTGTCGCGGCGACAGGCGCTGTTGGGAGGCGCCGC
ACTACTCACCGCCATGGGCCTCGCGCCGTTTGCCACCCTCGCCAAAAGCG
GCGACTCGCCAAAGATCTCCGTGTTCGGCGTGGGCGGTGCCTCCTCTCCG
TTCGACTCTGGCATACAGACGGGTGGAAAGGTTCAGTACAAGCCGTTTGG
GGAAGATGAGGTGGCGGTTTTCAAGCGCATTGTGGACGATTCGAAGGAAC
GTTTGATTGGATCGGCTGATTCCATCAAGGGCAAGAACTGGGAGGATATC
AGGAGTCAAATCCGACTGCAATCTGATCTGCGCAAGGTGCAGTTGACCAT
TAACGCCAACATGCCGGATAAGAAGAGTGAGGACAAGGCTGCAAAGGCGT
ATTTCGCCTTCAAGACCGACATTGAAAAACTGGACCAAGCCTGCGTGCAG
AAGAACCAGGCTGGTGCGTACAAGGCGTACAACGCCGCGCTCAAGAGTCT
GGCCGCCTGGCAAGATACCACCGGATACTGA
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protein sequence of Gcaud331.t1

>Gcaud331.t1 ID=Gcaud331.t1|Name=Gcaud331.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=177bp
MSAAPVSRRQALLGGAALLTAMGLAPFATLAKSGDSPKISVFGVGGASSP
FDSGIQTGGKVQYKPFGEDEVAVFKRIVDDSKERLIGSADSIKGKNWEDI
RSQIRLQSDLRKVQLTINANMPDKKSEDKAAKAYFAFKTDIEKLDQACVQ
KNQAGAYKAYNAALKSLAAWQDTTGY*
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mRNA from alignment at NODE_2556_length_5321_cov_3.193881:4628..5158-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud331.t1 ID=Gcaud331.t1|Name=Gcaud331.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=531bp|location=Sequence derived from alignment at NODE_2556_length_5321_cov_3.193881:4628..5158- (Gracilaria caudata M_176_S67 male)
ATGAGTGCAGCGCCCGTGTCGCGGCGACAGGCGCTGTTGGGAGGCGCCGC
ACTACTCACCGCCATGGGCCTCGCGCCGTTTGCCACCCTCGCCAAAAGCG
GCGACTCGCCAAAGATCTCCGTGTTCGGCGTGGGCGGTGCCTCCTCTCCG
TTCGACTCTGGCATACAGACGGGTGGAAAGGTTCAGTACAAGCCGTTTGG
GGAAGATGAGGTGGCGGTTTTCAAGCGCATTGTGGACGATTCGAAGGAAC
GTTTGATTGGATCGGCTGATTCCATCAAGGGCAAGAACTGGGAGGATATC
AGGAGTCAAATCCGACTGCAATCTGATCTGCGCAAGGTGCAGTTGACCAT
TAACGCCAACATGCCGGATAAGAAGAGTGAGGACAAGGCTGCAAAGGCGT
ATTTCGCCTTCAAGACCGACATTGAAAAACTGGACCAAGCCTGCGTGCAG
AAGAACCAGGCTGGTGCGTACAAGGCGTACAACGCCGCGCTCAAGAGTCT
GGCCGCCTGGCAAGATACCACCGGATACTGA
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Coding sequence (CDS) from alignment at NODE_2556_length_5321_cov_3.193881:4628..5158-

>Gcaud331.t1 ID=Gcaud331.t1|Name=Gcaud331.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=531bp|location=Sequence derived from alignment at NODE_2556_length_5321_cov_3.193881:4628..5158- (Gracilaria caudata M_176_S67 male)
ATGAGTGCAGCGCCCGTGTCGCGGCGACAGGCGCTGTTGGGAGGCGCCGC
ACTACTCACCGCCATGGGCCTCGCGCCGTTTGCCACCCTCGCCAAAAGCG
GCGACTCGCCAAAGATCTCCGTGTTCGGCGTGGGCGGTGCCTCCTCTCCG
TTCGACTCTGGCATACAGACGGGTGGAAAGGTTCAGTACAAGCCGTTTGG
GGAAGATGAGGTGGCGGTTTTCAAGCGCATTGTGGACGATTCGAAGGAAC
GTTTGATTGGATCGGCTGATTCCATCAAGGGCAAGAACTGGGAGGATATC
AGGAGTCAAATCCGACTGCAATCTGATCTGCGCAAGGTGCAGTTGACCAT
TAACGCCAACATGCCGGATAAGAAGAGTGAGGACAAGGCTGCAAAGGCGT
ATTTCGCCTTCAAGACCGACATTGAAAAACTGGACCAAGCCTGCGTGCAG
AAGAACCAGGCTGGTGCGTACAAGGCGTACAACGCCGCGCTCAAGAGTCT
GGCCGCCTGGCAAGATACCACCGGATACTGA
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