Gcaud8515.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8515.t1
Unique NameGcaud8515.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length134
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2554_length_5327_cov_3.973453contigNODE_2554_length_5327_cov_3.973453:4909..5310 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72228.T5AD14
PFAMsNuc_sug_transp
Max annot lvl4751|Fungi
Evalue3.34e-07
EggNOG OGsCOG0697@1|root,KOG2234@2759|Eukaryota,39WUZ@33154|Opisthokonta,3P0TP@4751|Fungi,3QTTZ@4890|Ascomycota,218U8@147550|Sordariomycetes,3TD5P@5125|Hypocreales
DescriptionNucleotide-sugar transporter
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8515Gcaud8515Gracilaria caudata M_176_S67 malegeneNODE_2554_length_5327_cov_3.973453 4909..5310 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8515.t1.stop1Gcaud8515.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2554_length_5327_cov_3.973453 4909..4911 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8515.t1.CDS1Gcaud8515.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2554_length_5327_cov_3.973453 4909..5310 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8515.t1.exon1Gcaud8515.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2554_length_5327_cov_3.973453 4909..5310 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8515.t1.start1Gcaud8515.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2554_length_5327_cov_3.973453 5308..5310 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8515.t1Gcaud8515.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2554_length_5327_cov_3.973453 4909..5310 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8515.t1 ID=Gcaud8515.t1|Name=Gcaud8515.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=134bp
MGALLNLAVFTNSRVTNQATPAFFEGYNAMAVAVVCSNAFMGVAMNVVYK
YADAVVKNIATSTTTVLLVIISAAFFGGRDNMMVFLGGGIVVMGTYLYFA
IGVSEQHLSELQKARRKASPASDARSSSTSLSL*
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spliced messenger RNA

>Gcaud8515.t1 ID=Gcaud8515.t1|Name=Gcaud8515.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=402bp|location=Sequence derived from alignment at NODE_2554_length_5327_cov_3.973453:4909..5310- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGCATTGTTGAACCTGGCAGTGTTTACGAACAGTCGCGTGACGAA
TCAGGCCACGCCCGCTTTTTTCGAAGGATACAACGCAATGGCGGTGGCGG
TGGTGTGCTCCAACGCGTTCATGGGCGTGGCCATGAACGTGGTGTACAAG
TACGCCGACGCTGTGGTGAAGAACATCGCCACCAGCACCACCACGGTGCT
GCTGGTGATCATCTCGGCTGCATTTTTCGGCGGACGCGACAACATGATGG
TGTTCCTTGGCGGCGGCATCGTGGTCATGGGCACATATCTGTACTTTGCC
ATCGGCGTGAGCGAGCAACACCTGAGCGAGCTGCAAAAGGCGCGACGCAA
AGCGTCGCCCGCAAGCGATGCGCGCTCTTCGTCGACGTCGCTTTCGCTTT
GA
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protein sequence of Gcaud8515.t1

>Gcaud8515.t1 ID=Gcaud8515.t1|Name=Gcaud8515.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=134bp
MGALLNLAVFTNSRVTNQATPAFFEGYNAMAVAVVCSNAFMGVAMNVVYK
YADAVVKNIATSTTTVLLVIISAAFFGGRDNMMVFLGGGIVVMGTYLYFA
IGVSEQHLSELQKARRKASPASDARSSSTSLSL*
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mRNA from alignment at NODE_2554_length_5327_cov_3.973453:4909..5310-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8515.t1 ID=Gcaud8515.t1|Name=Gcaud8515.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=402bp|location=Sequence derived from alignment at NODE_2554_length_5327_cov_3.973453:4909..5310- (Gracilaria caudata M_176_S67 male)
ATGGGTGCATTGTTGAACCTGGCAGTGTTTACGAACAGTCGCGTGACGAA
TCAGGCCACGCCCGCTTTTTTCGAAGGATACAACGCAATGGCGGTGGCGG
TGGTGTGCTCCAACGCGTTCATGGGCGTGGCCATGAACGTGGTGTACAAG
TACGCCGACGCTGTGGTGAAGAACATCGCCACCAGCACCACCACGGTGCT
GCTGGTGATCATCTCGGCTGCATTTTTCGGCGGACGCGACAACATGATGG
TGTTCCTTGGCGGCGGCATCGTGGTCATGGGCACATATCTGTACTTTGCC
ATCGGCGTGAGCGAGCAACACCTGAGCGAGCTGCAAAAGGCGCGACGCAA
AGCGTCGCCCGCAAGCGATGCGCGCTCTTCGTCGACGTCGCTTTCGCTTT
GA
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Coding sequence (CDS) from alignment at NODE_2554_length_5327_cov_3.973453:4909..5310-

>Gcaud8515.t1 ID=Gcaud8515.t1|Name=Gcaud8515.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=402bp|location=Sequence derived from alignment at NODE_2554_length_5327_cov_3.973453:4909..5310- (Gracilaria caudata M_176_S67 male)
ATGGGTGCATTGTTGAACCTGGCAGTGTTTACGAACAGTCGCGTGACGAA
TCAGGCCACGCCCGCTTTTTTCGAAGGATACAACGCAATGGCGGTGGCGG
TGGTGTGCTCCAACGCGTTCATGGGCGTGGCCATGAACGTGGTGTACAAG
TACGCCGACGCTGTGGTGAAGAACATCGCCACCAGCACCACCACGGTGCT
GCTGGTGATCATCTCGGCTGCATTTTTCGGCGGACGCGACAACATGATGG
TGTTCCTTGGCGGCGGCATCGTGGTCATGGGCACATATCTGTACTTTGCC
ATCGGCGTGAGCGAGCAACACCTGAGCGAGCTGCAAAAGGCGCGACGCAA
AGCGTCGCCCGCAAGCGATGCGCGCTCTTCGTCGACGTCGCTTTCGCTTT
GA
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