Gcaud8514.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8514.t1
Unique Name	Gcaud8514.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	540

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2554_length_5327_cov_3.973453	contig	NODE_2554_length_5327_cov_3.973453:2081..3700 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704310.1
PFAMs	Asp
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01379,ko:K04521,ko:K06002,ko:K07747
KEGG Pathway	ko04071,ko04140,ko04142,ko04210,ko04915,ko04974,ko05010,ko05152,map04071,map04140,map04142,map04210,map04915,map04974,map05010,map05152
Evalue	7.8e-102
EggNOG OGs	KOG1339@1\|root,KOG1339@2759\|Eukaryota
EC	3.4.23.1,3.4.23.45,3.4.23.46,3.4.23.5
Description	aspartic-type endopeptidase activity
COG category	M
BRITE	ko00000,ko00001,ko01000,ko01002,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8514	Gcaud8514	Gracilaria caudata M_176_S67 male	gene	NODE_2554_length_5327_cov_3.973453 2081..3700 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8514.t1.start1	Gcaud8514.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2554_length_5327_cov_3.973453 2081..2083 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8514.t1.CDS1	Gcaud8514.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2554_length_5327_cov_3.973453 2081..3700 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8514.t1.exon1	Gcaud8514.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2554_length_5327_cov_3.973453 2081..3700 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8514.t1.stop1	Gcaud8514.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2554_length_5327_cov_3.973453 3698..3700 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8514.t1	Gcaud8514.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2554_length_5327_cov_3.973453 2081..3700 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2554_length_5327_cov_3.973453:2081..3700+
coding sequence from alignment at NODE_2554_length_5327_cov_3.973453:2081..3700+

mRNA sequence

>Gcaud8514.t1 ID=Gcaud8514.t1|Name=Gcaud8514.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=540bp
MKKSTKPCCRLHIKRNVQNSVLIILILLLSTRCVPVFGSPRPVGRRERIR
ASLNRSVGGFWPLSRLEKKTAESPLVKDADDISAPVIIMPMIAVPPRDRI
PGSTKGLPYKVRIVHSHRRKRYGGLSGRIRRSSNALRRQIFGADGADEEK
ETPGAVGSNETVTVDLHGGIVGIGEYFSIIEIGGKEMRVQVDTGSSTLAV
PMMGCRSCSRKSDRRYSLESSEMGEAISCDSELCAAGRCSSSCPICSSRG
ACCSTERPEECGFSLRYADGSTLSGSLIKDEMVWGTLRCNVTFGGILRNS
ANFERSEVDGILGMAYKSLACNPSCFDPPFDSLVKSGQVDDVFSICMTST
GGKLMLGGLDHKVTKSEMQYVDMTHLGTQRYYRVSLGGHLWIGDEKVSMP
NFRTAIVDTGTTLIVTSTKTFTALKREFQKRFCEVPELCEEDSWFQSGMC
VSLSDEDMQLLPTLTMEVGGVIRLSLRAQDYMLKYKRGGKTYRCVGIMGM
DGLGGMVVLGNTLMQRYVTVYDRRRGRIGFAEAAENCGD*

spliced messenger RNA

>Gcaud8514.t1 ID=Gcaud8514.t1|Name=Gcaud8514.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1620bp|location=Sequence derived from alignment at NODE_2554_length_5327_cov_3.973453:2081..3700+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAAAAGCACTAAGCCTTGTTGTAGGTTGCACATCAAACGGAATGT
TCAGAACAGCGTACTCATTATTCTCATTTTGCTACTCTCAACTCGTTGCG
TACCCGTATTTGGATCACCACGACCTGTGGGACGACGAGAGAGGATTCGG
GCCTCTCTGAACCGCTCTGTCGGCGGGTTTTGGCCTCTTTCCCGTTTGGA
AAAGAAGACAGCAGAATCACCCTTAGTGAAAGATGCAGATGACATTTCAG
CGCCAGTGATCATCATGCCAATGATTGCTGTGCCGCCCCGGGATCGAATT
CCGGGCTCCACAAAAGGATTGCCGTACAAAGTACGCATTGTACACTCGCA
TAGACGGAAGCGCTATGGGGGCCTTAGTGGACGAATACGTCGTTCAAGTA
ATGCGCTCCGAAGACAGATCTTCGGAGCGGACGGTGCAGATGAAGAAAAG
GAGACGCCTGGCGCTGTGGGAAGTAATGAAACAGTGACAGTGGACTTACA
TGGAGGAATTGTTGGGATAGGGGAATATTTCTCAATCATCGAGATTGGCG
GCAAGGAAATGAGAGTGCAGGTGGATACTGGGTCGAGTACATTGGCGGTA
CCGATGATGGGTTGTCGCTCATGTTCTCGGAAATCGGATCGGCGATACTC
TTTGGAAAGCAGCGAAATGGGGGAAGCTATTAGTTGTGACTCGGAGTTGT
GTGCCGCGGGACGATGTTCCAGCTCTTGTCCCATTTGTTCGAGTCGCGGG
GCTTGCTGTTCAACCGAGCGACCCGAGGAATGTGGGTTTTCTCTTCGCTA
CGCGGACGGTTCAACTCTGTCCGGGTCTTTGATTAAGGACGAGATGGTGT
GGGGCACGTTACGATGTAACGTGACATTCGGAGGCATTCTGCGCAACTCG
GCAAACTTTGAGCGCTCCGAGGTGGATGGAATTCTGGGAATGGCGTACAA
ATCATTGGCTTGTAACCCGTCTTGTTTCGACCCTCCTTTTGATTCACTGG
TGAAAAGTGGGCAGGTCGATGACGTGTTCTCAATCTGCATGACAAGCACT
GGTGGAAAGCTAATGCTAGGCGGACTGGATCACAAGGTGACAAAGTCGGA
AATGCAGTATGTAGATATGACTCACCTCGGGACACAACGTTACTACCGAG
TATCGTTAGGCGGTCATCTATGGATTGGGGATGAAAAGGTTTCCATGCCC
AACTTTCGAACGGCAATTGTGGACACGGGTACGACGTTGATCGTGACGTC
GACGAAGACATTCACGGCGCTGAAACGTGAATTTCAGAAGCGCTTTTGCG
AGGTGCCGGAGCTGTGCGAGGAGGACTCGTGGTTTCAGAGTGGAATGTGT
GTGAGCTTATCTGACGAGGACATGCAACTGCTACCGACTCTGACGATGGA
GGTGGGCGGAGTGATTCGACTGTCGCTGAGAGCGCAGGACTACATGCTGA
AATACAAGCGGGGCGGGAAGACGTACCGGTGCGTGGGGATCATGGGAATG
GACGGACTGGGTGGAATGGTGGTACTGGGCAATACACTGATGCAGAGGTA
TGTGACAGTGTACGACCGACGACGCGGCAGAATCGGATTCGCAGAGGCGG
CAGAGAACTGCGGCGATTAG

protein sequence of Gcaud8514.t1

>Gcaud8514.t1 ID=Gcaud8514.t1|Name=Gcaud8514.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=540bp
MKKSTKPCCRLHIKRNVQNSVLIILILLLSTRCVPVFGSPRPVGRRERIR
ASLNRSVGGFWPLSRLEKKTAESPLVKDADDISAPVIIMPMIAVPPRDRI
PGSTKGLPYKVRIVHSHRRKRYGGLSGRIRRSSNALRRQIFGADGADEEK
ETPGAVGSNETVTVDLHGGIVGIGEYFSIIEIGGKEMRVQVDTGSSTLAV
PMMGCRSCSRKSDRRYSLESSEMGEAISCDSELCAAGRCSSSCPICSSRG
ACCSTERPEECGFSLRYADGSTLSGSLIKDEMVWGTLRCNVTFGGILRNS
ANFERSEVDGILGMAYKSLACNPSCFDPPFDSLVKSGQVDDVFSICMTST
GGKLMLGGLDHKVTKSEMQYVDMTHLGTQRYYRVSLGGHLWIGDEKVSMP
NFRTAIVDTGTTLIVTSTKTFTALKREFQKRFCEVPELCEEDSWFQSGMC
VSLSDEDMQLLPTLTMEVGGVIRLSLRAQDYMLKYKRGGKTYRCVGIMGM
DGLGGMVVLGNTLMQRYVTVYDRRRGRIGFAEAAENCGD*

mRNA from alignment at NODE_2554_length_5327_cov_3.973453:2081..3700+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8514.t1 ID=Gcaud8514.t1|Name=Gcaud8514.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1620bp|location=Sequence derived from alignment at NODE_2554_length_5327_cov_3.973453:2081..3700+ (Gracilaria caudata M_176_S67 male)
ATGAAGAAAAGCACTAAGCCTTGTTGTAGGTTGCACATCAAACGGAATGT
TCAGAACAGCGTACTCATTATTCTCATTTTGCTACTCTCAACTCGTTGCG
TACCCGTATTTGGATCACCACGACCTGTGGGACGACGAGAGAGGATTCGG
GCCTCTCTGAACCGCTCTGTCGGCGGGTTTTGGCCTCTTTCCCGTTTGGA
AAAGAAGACAGCAGAATCACCCTTAGTGAAAGATGCAGATGACATTTCAG
CGCCAGTGATCATCATGCCAATGATTGCTGTGCCGCCCCGGGATCGAATT
CCGGGCTCCACAAAAGGATTGCCGTACAAAGTACGCATTGTACACTCGCA
TAGACGGAAGCGCTATGGGGGCCTTAGTGGACGAATACGTCGTTCAAGTA
ATGCGCTCCGAAGACAGATCTTCGGAGCGGACGGTGCAGATGAAGAAAAG
GAGACGCCTGGCGCTGTGGGAAGTAATGAAACAGTGACAGTGGACTTACA
TGGAGGAATTGTTGGGATAGGGGAATATTTCTCAATCATCGAGATTGGCG
GCAAGGAAATGAGAGTGCAGGTGGATACTGGGTCGAGTACATTGGCGGTA
CCGATGATGGGTTGTCGCTCATGTTCTCGGAAATCGGATCGGCGATACTC
TTTGGAAAGCAGCGAAATGGGGGAAGCTATTAGTTGTGACTCGGAGTTGT
GTGCCGCGGGACGATGTTCCAGCTCTTGTCCCATTTGTTCGAGTCGCGGG
GCTTGCTGTTCAACCGAGCGACCCGAGGAATGTGGGTTTTCTCTTCGCTA
CGCGGACGGTTCAACTCTGTCCGGGTCTTTGATTAAGGACGAGATGGTGT
GGGGCACGTTACGATGTAACGTGACATTCGGAGGCATTCTGCGCAACTCG
GCAAACTTTGAGCGCTCCGAGGTGGATGGAATTCTGGGAATGGCGTACAA
ATCATTGGCTTGTAACCCGTCTTGTTTCGACCCTCCTTTTGATTCACTGG
TGAAAAGTGGGCAGGTCGATGACGTGTTCTCAATCTGCATGACAAGCACT
GGTGGAAAGCTAATGCTAGGCGGACTGGATCACAAGGTGACAAAGTCGGA
AATGCAGTATGTAGATATGACTCACCTCGGGACACAACGTTACTACCGAG
TATCGTTAGGCGGTCATCTATGGATTGGGGATGAAAAGGTTTCCATGCCC
AACTTTCGAACGGCAATTGTGGACACGGGTACGACGTTGATCGTGACGTC
GACGAAGACATTCACGGCGCTGAAACGTGAATTTCAGAAGCGCTTTTGCG
AGGTGCCGGAGCTGTGCGAGGAGGACTCGTGGTTTCAGAGTGGAATGTGT
GTGAGCTTATCTGACGAGGACATGCAACTGCTACCGACTCTGACGATGGA
GGTGGGCGGAGTGATTCGACTGTCGCTGAGAGCGCAGGACTACATGCTGA
AATACAAGCGGGGCGGGAAGACGTACCGGTGCGTGGGGATCATGGGAATG
GACGGACTGGGTGGAATGGTGGTACTGGGCAATACACTGATGCAGAGGTA
TGTGACAGTGTACGACCGACGACGCGGCAGAATCGGATTCGCAGAGGCGG
CAGAGAACTGCGGCGATTAG

Coding sequence (CDS) from alignment at NODE_2554_length_5327_cov_3.973453:2081..3700+

>Gcaud8514.t1 ID=Gcaud8514.t1|Name=Gcaud8514.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1620bp|location=Sequence derived from alignment at NODE_2554_length_5327_cov_3.973453:2081..3700+ (Gracilaria caudata M_176_S67 male)
ATGAAGAAAAGCACTAAGCCTTGTTGTAGGTTGCACATCAAACGGAATGT
TCAGAACAGCGTACTCATTATTCTCATTTTGCTACTCTCAACTCGTTGCG
TACCCGTATTTGGATCACCACGACCTGTGGGACGACGAGAGAGGATTCGG
GCCTCTCTGAACCGCTCTGTCGGCGGGTTTTGGCCTCTTTCCCGTTTGGA
AAAGAAGACAGCAGAATCACCCTTAGTGAAAGATGCAGATGACATTTCAG
CGCCAGTGATCATCATGCCAATGATTGCTGTGCCGCCCCGGGATCGAATT
CCGGGCTCCACAAAAGGATTGCCGTACAAAGTACGCATTGTACACTCGCA
TAGACGGAAGCGCTATGGGGGCCTTAGTGGACGAATACGTCGTTCAAGTA
ATGCGCTCCGAAGACAGATCTTCGGAGCGGACGGTGCAGATGAAGAAAAG
GAGACGCCTGGCGCTGTGGGAAGTAATGAAACAGTGACAGTGGACTTACA
TGGAGGAATTGTTGGGATAGGGGAATATTTCTCAATCATCGAGATTGGCG
GCAAGGAAATGAGAGTGCAGGTGGATACTGGGTCGAGTACATTGGCGGTA
CCGATGATGGGTTGTCGCTCATGTTCTCGGAAATCGGATCGGCGATACTC
TTTGGAAAGCAGCGAAATGGGGGAAGCTATTAGTTGTGACTCGGAGTTGT
GTGCCGCGGGACGATGTTCCAGCTCTTGTCCCATTTGTTCGAGTCGCGGG
GCTTGCTGTTCAACCGAGCGACCCGAGGAATGTGGGTTTTCTCTTCGCTA
CGCGGACGGTTCAACTCTGTCCGGGTCTTTGATTAAGGACGAGATGGTGT
GGGGCACGTTACGATGTAACGTGACATTCGGAGGCATTCTGCGCAACTCG
GCAAACTTTGAGCGCTCCGAGGTGGATGGAATTCTGGGAATGGCGTACAA
ATCATTGGCTTGTAACCCGTCTTGTTTCGACCCTCCTTTTGATTCACTGG
TGAAAAGTGGGCAGGTCGATGACGTGTTCTCAATCTGCATGACAAGCACT
GGTGGAAAGCTAATGCTAGGCGGACTGGATCACAAGGTGACAAAGTCGGA
AATGCAGTATGTAGATATGACTCACCTCGGGACACAACGTTACTACCGAG
TATCGTTAGGCGGTCATCTATGGATTGGGGATGAAAAGGTTTCCATGCCC
AACTTTCGAACGGCAATTGTGGACACGGGTACGACGTTGATCGTGACGTC
GACGAAGACATTCACGGCGCTGAAACGTGAATTTCAGAAGCGCTTTTGCG
AGGTGCCGGAGCTGTGCGAGGAGGACTCGTGGTTTCAGAGTGGAATGTGT
GTGAGCTTATCTGACGAGGACATGCAACTGCTACCGACTCTGACGATGGA
GGTGGGCGGAGTGATTCGACTGTCGCTGAGAGCGCAGGACTACATGCTGA
AATACAAGCGGGGCGGGAAGACGTACCGGTGCGTGGGGATCATGGGAATG
GACGGACTGGGTGGAATGGTGGTACTGGGCAATACACTGATGCAGAGGTA
TGTGACAGTGTACGACCGACGACGCGGCAGAATCGGATTCGCAGAGGCGG
CAGAGAACTGCGGCGATTAG