Gcaud1597.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1597.t1
Unique NameGcaud1597.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length124
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2513_length_5437_cov_16.825664contigNODE_2513_length_5437_cov_16.825664:4596..5051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703380.1
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K08835
GOsGO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0009893,GO:0009987,GO:0010119,GO:0010562,GO:0010604,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019220,GO:0019222,GO:0019538,GO:0023014,GO:0023052,GO:0031098,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032147,GO:0032268,GO:0032270,GO:0033554,GO:0033674,GO:0035556,GO:0036211,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043412,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045859,GO:0045860,GO:0045937,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1902456
Evalue1.8e-36
EggNOG OGsKOG0582@1|root,KOG0582@2759|Eukaryota
EC2.7.11.1
Descriptionstress-activated protein kinase signaling cascade
COG categoryS
BRITEko00000,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1597Gcaud1597Gracilaria caudata M_176_S67 malegeneNODE_2513_length_5437_cov_16.825664 4596..5051 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1597.t1Gcaud1597.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2513_length_5437_cov_16.825664 4596..5051 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1597.t1.stop1Gcaud1597.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2513_length_5437_cov_16.825664 4596..4598 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1597.t1.CDS1Gcaud1597.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2513_length_5437_cov_16.825664 4596..4614 -
Gcaud1597.t1.CDS2Gcaud1597.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_2513_length_5437_cov_16.825664 4699..5051 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1597.t1.exon1Gcaud1597.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2513_length_5437_cov_16.825664 4596..4614 -
Gcaud1597.t1.exon2Gcaud1597.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_2513_length_5437_cov_16.825664 4699..5051 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1597.t1.intron1Gcaud1597.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_2513_length_5437_cov_16.825664 4615..4698 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1597.t1.start1Gcaud1597.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2513_length_5437_cov_16.825664 5049..5051 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1597.t1 ID=Gcaud1597.t1|Name=Gcaud1597.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=124bp
MAPEVMEQASGYDYKADVWSLGTTPIELARWFAPFYNYPPMKVLFLTLQK
PPPTLTGPAASKFSQEYHHFVADCLQKDPKIRPSAKHLFKHKLFANGVEK
PPDLPETIAKLPPNRVQGYGLGF*
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spliced messenger RNA

>Gcaud1597.t1 ID=Gcaud1597.t1|Name=Gcaud1597.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=372bp|location=Sequence derived from alignment at NODE_2513_length_5437_cov_16.825664:4596..5051- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCAGAGGTTATGGAACAAGCCTCAGGCTATGACTACAAAGCTGA
CGTATGGTCTCTAGGCACTACCCCCATTGAGCTCGCTCGGTGGTTCGCGC
CTTTCTACAACTACCCGCCCATGAAGGTGTTGTTTCTCACCTTGCAGAAG
CCACCACCCACACTCACGGGCCCAGCTGCGAGCAAGTTCTCGCAAGAGTA
CCATCACTTTGTTGCTGATTGCCTGCAGAAAGACCCAAAGATCCGACCGT
CTGCAAAGCATCTTTTCAAACATAAGCTGTTTGCGAATGGTGTTGAAAAA
CCTCCAGACTTGCCAGAAACCATCGCAAAATTGCCCCCCAATAGGGTCCA
GGGGTATGGGTTGGGATTTTGA
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protein sequence of Gcaud1597.t1

>Gcaud1597.t1 ID=Gcaud1597.t1|Name=Gcaud1597.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=124bp
MAPEVMEQASGYDYKADVWSLGTTPIELARWFAPFYNYPPMKVLFLTLQK
PPPTLTGPAASKFSQEYHHFVADCLQKDPKIRPSAKHLFKHKLFANGVEK
PPDLPETIAKLPPNRVQGYGLGF*
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mRNA from alignment at NODE_2513_length_5437_cov_16.825664:4596..5051-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1597.t1 ID=Gcaud1597.t1|Name=Gcaud1597.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=456bp|location=Sequence derived from alignment at NODE_2513_length_5437_cov_16.825664:4596..5051- (Gracilaria caudata M_176_S67 male)
ATGGCTCCAGAGGTTATGGAACAAGCCTCAGGCTATGACTACAAAGCTGA
CGTATGGTCTCTAGGCACTACCCCCATTGAGCTCGCTCGGTGGTTCGCGC
CTTTCTACAACTACCCGCCCATGAAGGTGTTGTTTCTCACCTTGCAGAAG
CCACCACCCACACTCACGGGCCCAGCTGCGAGCAAGTTCTCGCAAGAGTA
CCATCACTTTGTTGCTGATTGCCTGCAGAAAGACCCAAAGATCCGACCGT
CTGCAAAGCATCTTTTCAAACATAAGCTGTTTGCGAATGGTGTTGAAAAA
CCTCCAGACTTGCCAGAAACCATCGCAAAATTGCCCCCCAATAGGGTCCA
GGGGTGGTTCGCAGCGGCAGCTCATGCGTCAGTTACAGAAAGCAGCACAA
CCCCACCGATCTGGAATCTATGATCTTACTGTTAAAGGTATGGGTTGGGA
TTTTGA
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Coding sequence (CDS) from alignment at NODE_2513_length_5437_cov_16.825664:4596..5051-

>Gcaud1597.t1 ID=Gcaud1597.t1|Name=Gcaud1597.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=372bp|location=Sequence derived from alignment at NODE_2513_length_5437_cov_16.825664:4596..5051- (Gracilaria caudata M_176_S67 male)
ATGGCTCCAGAGGTTATGGAACAAGCCTCAGGCTATGACTACAAAGCTGA
CGTATGGTCTCTAGGCACTACCCCCATTGAGCTCGCTCGGTGGTTCGCGC
CTTTCTACAACTACCCGCCCATGAAGGTGTTGTTTCTCACCTTGCAGAAG
CCACCACCCACACTCACGGGCCCAGCTGCGAGCAAGTTCTCGCAAGAGTA
CCATCACTTTGTTGCTGATTGCCTGCAGAAAGACCCAAAGATCCGACCGT
CTGCAAAGCATCTTTTCAAACATAAGCTGTTTGCGAATGGTGTTGAAAAA
CCTCCAGACTTGCCAGAAACCATCGCAAAATTGCCCCCCAATAGGGTCCA
GGGGTATGGGTTGGGATTTTGA
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