Gcaud3789.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3789.t1
Unique NameGcaud3789.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length17
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2495_length_5472_cov_3.655454contigNODE_2495_length_5472_cov_3.655454:737..1072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3789Gcaud3789Gracilaria caudata M_176_S67 malegeneNODE_2495_length_5472_cov_3.655454 737..1072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3789.t1Gcaud3789.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2495_length_5472_cov_3.655454 737..1072 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3789.t1.CDS1Gcaud3789.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2495_length_5472_cov_3.655454 737..739 -
Gcaud3789.t1.CDS2Gcaud3789.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_2495_length_5472_cov_3.655454 832..866 -
Gcaud3789.t1.CDS3Gcaud3789.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_2495_length_5472_cov_3.655454 956..963 -
Gcaud3789.t1.CDS4Gcaud3789.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_2495_length_5472_cov_3.655454 1068..1072 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3789.t1.exon1Gcaud3789.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2495_length_5472_cov_3.655454 737..739 -
Gcaud3789.t1.exon2Gcaud3789.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_2495_length_5472_cov_3.655454 832..866 -
Gcaud3789.t1.exon3Gcaud3789.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_2495_length_5472_cov_3.655454 956..963 -
Gcaud3789.t1.exon4Gcaud3789.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_2495_length_5472_cov_3.655454 1068..1072 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3789.t1.intron1Gcaud3789.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_2495_length_5472_cov_3.655454 740..831 -
Gcaud3789.t1.intron2Gcaud3789.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_2495_length_5472_cov_3.655454 867..955 -
Gcaud3789.t1.intron3Gcaud3789.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_2495_length_5472_cov_3.655454 964..1067 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3789.t1.start1Gcaud3789.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2495_length_5472_cov_3.655454 1070..1072 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3789.t1 ID=Gcaud3789.t1|Name=Gcaud3789.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=17bp
MGFTEMLIFAWLAIWWL
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spliced messenger RNA

>Gcaud3789.t1 ID=Gcaud3789.t1|Name=Gcaud3789.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=51bp|location=Sequence derived from alignment at NODE_2495_length_5472_cov_3.655454:737..1072- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTTTACTGAGATGCTCATCTTTGCATGGCTTGCAATCTGGTGGCT
T
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protein sequence of Gcaud3789.t1

>Gcaud3789.t1 ID=Gcaud3789.t1|Name=Gcaud3789.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=17bp
MGFTEMLIFAWLAIWWL
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mRNA from alignment at NODE_2495_length_5472_cov_3.655454:737..1072-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3789.t1 ID=Gcaud3789.t1|Name=Gcaud3789.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=336bp|location=Sequence derived from alignment at NODE_2495_length_5472_cov_3.655454:737..1072- (Gracilaria caudata M_176_S67 male)
ATGGGGTCCGTTGTGACACTTTTGCGTACCTTAGCAGAACGATCAAGCAG
TGAAACGATTTTTATATCTGACGTCTCTCTCTCATCGCGCTTTGGACATT
GGCATGTAGCTTTACTGGTCTGCGATTGCACTCATCATCCTCACCGCCAC
AATTGCATGGTACTCCATTGAGTACTGTTCTCGTTTCAAACTACCTGAGC
GTGCAGAGATGCTCATCTTTGCATGGCTTGCAATCTGGTGGGTAAGTTGT
CTGTAGCCATTAGAATTCCCTTCACACATTTTGCTAGCGAAGAAACAGAA
CTCTGACGATCTCGAATGGACATGGCGAAAAAGCTT
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Coding sequence (CDS) from alignment at NODE_2495_length_5472_cov_3.655454:737..1072-

>Gcaud3789.t1 ID=Gcaud3789.t1|Name=Gcaud3789.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=51bp|location=Sequence derived from alignment at NODE_2495_length_5472_cov_3.655454:737..1072- (Gracilaria caudata M_176_S67 male)
ATGGGCTTTACTGAGATGCTCATCTTTGCATGGCTTGCAATCTGGTGGCT
T
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