Gcaud2238.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2238.t1
Unique NameGcaud2238.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2494_length_5473_cov_3.771089contigNODE_2494_length_5473_cov_3.771089:1417..2484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10228.TriadP37364
Preferred namePPIB
PFAMsPro_isomerase
Max annot lvl33208|Metazoa
KEGG koko:K03768
GOsGO:0000413,GO:0001501,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005788,GO:0005790,GO:0006457,GO:0006464,GO:0006807,GO:0006810,GO:0007275,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0016018,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0019899,GO:0031647,GO:0031974,GO:0032501,GO:0032502,GO:0032991,GO:0033218,GO:0034663,GO:0035821,GO:0036211,GO:0040008,GO:0040014,GO:0040018,GO:0042277,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043900,GO:0043902,GO:0043903,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044403,GO:0044419,GO:0044421,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044788,GO:0044794,GO:0044827,GO:0044829,GO:0044877,GO:0045069,GO:0045070,GO:0045927,GO:0046907,GO:0048471,GO:0048513,GO:0048518,GO:0048524,GO:0048638,GO:0048639,GO:0048731,GO:0048856,GO:0050789,GO:0050792,GO:0050793,GO:0050821,GO:0051082,GO:0051094,GO:0051169,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051641,GO:0051649,GO:0051702,GO:0051704,GO:0051817,GO:0051851,GO:0060348,GO:0061077,GO:0065007,GO:0065008,GO:0070013,GO:0070063,GO:0071704,GO:0140096,GO:1901564,GO:1903900,GO:1903902
Evalue1.44e-72
EggNOG OGsCOG0652@1|root,KOG0880@2759|Eukaryota,38FKT@33154|Opisthokonta,3BCX1@33208|Metazoa
EC5.2.1.8
DescriptionPPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
COG categoryO
BRITEko00000,ko01000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2238Gcaud2238Gracilaria caudata M_176_S67 malegeneNODE_2494_length_5473_cov_3.771089 1417..2484 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2238.t1.CDS1Gcaud2238.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2494_length_5473_cov_3.771089 1417..1455 +
Gcaud2238.t1.CDS2Gcaud2238.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_2494_length_5473_cov_3.771089 1526..1825 +
Gcaud2238.t1.CDS3Gcaud2238.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_2494_length_5473_cov_3.771089 1962..1971 +
Gcaud2238.t1.CDS4Gcaud2238.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_2494_length_5473_cov_3.771089 2059..2138 +
Gcaud2238.t1.CDS5Gcaud2238.t1.CDS5Gracilaria caudata M_176_S67 maleCDSNODE_2494_length_5473_cov_3.771089 2230..2484 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2238.t1.exon1Gcaud2238.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2494_length_5473_cov_3.771089 1417..1455 +
Gcaud2238.t1.exon2Gcaud2238.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_2494_length_5473_cov_3.771089 1526..1825 +
Gcaud2238.t1.exon3Gcaud2238.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_2494_length_5473_cov_3.771089 1962..1971 +
Gcaud2238.t1.exon4Gcaud2238.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_2494_length_5473_cov_3.771089 2059..2138 +
Gcaud2238.t1.exon5Gcaud2238.t1.exon5Gracilaria caudata M_176_S67 maleexonNODE_2494_length_5473_cov_3.771089 2230..2484 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2238.t1.intron1Gcaud2238.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_2494_length_5473_cov_3.771089 1456..1525 +
Gcaud2238.t1.intron2Gcaud2238.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_2494_length_5473_cov_3.771089 1826..1961 +
Gcaud2238.t1.intron3Gcaud2238.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_2494_length_5473_cov_3.771089 1972..2058 +
Gcaud2238.t1.intron4Gcaud2238.t1.intron4Gracilaria caudata M_176_S67 maleintronNODE_2494_length_5473_cov_3.771089 2139..2229 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2238.t1.stop1Gcaud2238.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2494_length_5473_cov_3.771089 2482..2484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2238.t1Gcaud2238.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2494_length_5473_cov_3.771089 1417..2484 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2238.t1 ID=Gcaud2238.t1|Name=Gcaud2238.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=228bp
AIHSHRCEVQLPKRSSSTPSSTTHRFSTNMALLRFVLPFAALFFAACARQ
SVTVTDHVFFDMSIGGESVGRMTFALFGETVPKTAKNFKHLALHTEGYGY
KNSIFHRIIPGFMAQGGDFEKSDGTGGKSIYGAKFDDENFDLRHVGRGVL
SMANAGPNTNGAQFFITFKDTPWLNGRHVVFGKLISGHEVLDRLEGLRTG
AMDRPKEEVTVVDCGSIDVDSPYKMDL*
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spliced messenger RNA

>Gcaud2238.t1 ID=Gcaud2238.t1|Name=Gcaud2238.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=684bp|location=Sequence derived from alignment at NODE_2494_length_5473_cov_3.771089:1417..2484+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
GCAATCCACAGTCACCGCTGCGAAGTGCAGCTACCAAAGCGCTCCTCCTC
CACTCCTTCCTCCACCACGCACCGCTTCTCGACCAACATGGCTCTCCTTC
GCTTCGTACTCCCTTTCGCAGCCCTCTTCTTCGCCGCCTGCGCGCGGCAG
AGCGTCACAGTCACGGATCATGTCTTTTTTGACATGTCCATCGGCGGCGA
GTCGGTCGGTCGCATGACGTTTGCGCTGTTTGGGGAAACCGTGCCCAAGA
CGGCCAAAAACTTCAAACATCTCGCGCTACACACCGAGGGATACGGCTAC
AAGAACAGCATCTTCCACCGAATCATTCCTGGCTTCATGGCGCAAGGAGG
TGATTTTGAGAAAAGCGATGGCACTGGCGGAAAATCCATATATGGCGCCA
AGTTTGATGACGAGAATTTCGACTTGAGGCACGTTGGACGCGGCGTGCTT
TCCATGGCCAACGCGGGGCCCAACACGAACGGCGCACAGTTCTTCATTAC
TTTCAAGGACACGCCGTGGTTGAATGGTCGCCATGTTGTGTTTGGAAAGC
TCATTTCTGGACATGAGGTGCTCGATCGCTTGGAGGGGTTGAGGACGGGA
GCGATGGACCGCCCGAAGGAGGAGGTTACCGTGGTTGATTGTGGAAGCAT
CGACGTGGATTCTCCGTACAAGATGGACTTATAG
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protein sequence of Gcaud2238.t1

>Gcaud2238.t1 ID=Gcaud2238.t1|Name=Gcaud2238.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=228bp
AIHSHRCEVQLPKRSSSTPSSTTHRFSTNMALLRFVLPFAALFFAACARQ
SVTVTDHVFFDMSIGGESVGRMTFALFGETVPKTAKNFKHLALHTEGYGY
KNSIFHRIIPGFMAQGGDFEKSDGTGGKSIYGAKFDDENFDLRHVGRGVL
SMANAGPNTNGAQFFITFKDTPWLNGRHVVFGKLISGHEVLDRLEGLRTG
AMDRPKEEVTVVDCGSIDVDSPYKMDL*
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mRNA from alignment at NODE_2494_length_5473_cov_3.771089:1417..2484+

Legend: CDSpolypeptideexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2238.t1 ID=Gcaud2238.t1|Name=Gcaud2238.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1068bp|location=Sequence derived from alignment at NODE_2494_length_5473_cov_3.771089:1417..2484+ (Gracilaria caudata M_176_S67 male)
GCAATCCACAGTCACCGCTGCGAAGTGCAGCTACCAAAGGTACGTGTAGC
GTACTTAAAGAAGTCGAGCCAACGCCTGCTGCTAACAACCGCCATCCCCT
ACCGCTCAGCGCTCCTCCTCCACTCCTTCCTCCACCACGCACCGCTTCTC
GACCAACATGGCTCTCCTTCGCTTCGTACTCCCTTTCGCAGCCCTCTTCT
TCGCCGCCTGCGCGCGGCAGAGCGTCACAGTCACGGATCATGTCTTTTTT
GACATGTCCATCGGCGGCGAGTCGGTCGGTCGCATGACGTTTGCGCTGTT
TGGGGAAACCGTGCCCAAGACGGCCAAAAACTTCAAACATCTCGCGCTAC
ACACCGAGGGATACGGCTACAAGAACAGCATCTTCCACCGAATCATTCCT
GGCTTCATGGTACGTGCTCGTGGCTGTGATTGATCGCAACACGCGTGGCC
CAGGCTGCGCTTTTGTGCGTACACGTTCGATCCGACTGACAACACGTTTT
CTTTTTTTTTTTTTGGTTGTGTTCGGCCTCAACAACTTGATGCAGGCGCA
AGGAGGTAAGCAATGAGTAATCTTGTGCGAATGCGAGCAAAACAGCATCG
GGTCGCGAGATTGGCTTTCTGACGATAAGTGATGCTCTTCAGGTGATTTT
GAGAAAAGCGATGGCACTGGCGGAAAATCCATATATGGCGCCAAGTTTGA
TGACGAGAATTTCGACTTGAGGGTACGTGTACGACACATGTGTGCTGATT
GAGCCACAGGTGGAAAGGCGTGAGGACTAACGATCAGTTGATTATTTCCA
TTTGATTGAACAGCACGTTGGACGCGGCGTGCTTTCCATGGCCAACGCGG
GGCCCAACACGAACGGCGCACAGTTCTTCATTACTTTCAAGGACACGCCG
TGGTTGAATGGTCGCCATGTTGTGTTTGGAAAGCTCATTTCTGGACATGA
GGTGCTCGATCGCTTGGAGGGGTTGAGGACGGGAGCGATGGACCGCCCGA
AGGAGGAGGTTACCGTGGTTGATTGTGGAAGCATCGACGTGGATTCTCCG
TACAAGATGGACTTATAG
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Coding sequence (CDS) from alignment at NODE_2494_length_5473_cov_3.771089:1417..2484+

>Gcaud2238.t1 ID=Gcaud2238.t1|Name=Gcaud2238.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=684bp|location=Sequence derived from alignment at NODE_2494_length_5473_cov_3.771089:1417..2484+ (Gracilaria caudata M_176_S67 male)
GCAATCCACAGTCACCGCTGCGAAGTGCAGCTACCAAAGCGCTCCTCCTC
CACTCCTTCCTCCACCACGCACCGCTTCTCGACCAACATGGCTCTCCTTC
GCTTCGTACTCCCTTTCGCAGCCCTCTTCTTCGCCGCCTGCGCGCGGCAG
AGCGTCACAGTCACGGATCATGTCTTTTTTGACATGTCCATCGGCGGCGA
GTCGGTCGGTCGCATGACGTTTGCGCTGTTTGGGGAAACCGTGCCCAAGA
CGGCCAAAAACTTCAAACATCTCGCGCTACACACCGAGGGATACGGCTAC
AAGAACAGCATCTTCCACCGAATCATTCCTGGCTTCATGGCGCAAGGAGG
TGATTTTGAGAAAAGCGATGGCACTGGCGGAAAATCCATATATGGCGCCA
AGTTTGATGACGAGAATTTCGACTTGAGGCACGTTGGACGCGGCGTGCTT
TCCATGGCCAACGCGGGGCCCAACACGAACGGCGCACAGTTCTTCATTAC
TTTCAAGGACACGCCGTGGTTGAATGGTCGCCATGTTGTGTTTGGAAAGC
TCATTTCTGGACATGAGGTGCTCGATCGCTTGGAGGGGTTGAGGACGGGA
GCGATGGACCGCCCGAAGGAGGAGGTTACCGTGGTTGATTGTGGAAGCAT
CGACGTGGATTCTCCGTACAAGATGGACTTATAG
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