Gcaud8425.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8425.t1
Unique NameGcaud8425.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length160
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_248_length_34309_cov_4.396809contigNODE_248_length_34309_cov_4.396809:5826..6561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1229276.DI53_1113
PFAMsPatatin
Max annot lvl976|Bacteroidetes
Evalue5.79e-06
EggNOG OGsCOG1752@1|root,COG1752@2|Bacteria,4NEFI@976|Bacteroidetes,1IS5V@117747|Sphingobacteriia
DescriptionPFAM Patatin-like phospholipase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8425Gcaud8425Gracilaria caudata M_176_S67 malegeneNODE_248_length_34309_cov_4.396809 5826..6561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8425.t1Gcaud8425.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_248_length_34309_cov_4.396809 5826..6561 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8425.t1.stop1Gcaud8425.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_248_length_34309_cov_4.396809 5826..5828 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8425.t1.CDS1Gcaud8425.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_248_length_34309_cov_4.396809 5826..6151 -
Gcaud8425.t1.CDS2Gcaud8425.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_248_length_34309_cov_4.396809 6408..6561 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8425.t1.exon1Gcaud8425.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_248_length_34309_cov_4.396809 5826..6151 -
Gcaud8425.t1.exon2Gcaud8425.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_248_length_34309_cov_4.396809 6408..6561 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8425.t1.intron1Gcaud8425.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_248_length_34309_cov_4.396809 6152..6407 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8425.t1.start1Gcaud8425.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_248_length_34309_cov_4.396809 6559..6561 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8425.t1 ID=Gcaud8425.t1|Name=Gcaud8425.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=160bp
MRRYADYTQILDTSQPEMWMAISGITCLSWISKREIQVNGILHWSILGRL
LREDPMVVVEDLPPTQMLVALMGVTRGQAMFKGIKVYEAIDEYDVTKFMI
APARVMSHGQKATPATGILDGFGRILEKKIRLHDYEECRRNSKSFKENIF
LYSQRRDWG*
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spliced messenger RNA

>Gcaud8425.t1 ID=Gcaud8425.t1|Name=Gcaud8425.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=480bp|location=Sequence derived from alignment at NODE_248_length_34309_cov_4.396809:5826..6561- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCAGGTATGCAGACTATACTCAGATTTTGGATACTTCTCAACCCGA
GATGTGGATGGCGATATCCGGAATCACATGTTTATCCTGGATATCAAAGA
GAGAGATACAAGTGAATGGAATTCTGCATTGGAGTATTCTAGGGCGACTT
CTGAGAGAGGATCCAATGGTGGTGGTTGAGGATCTTCCACCAACTCAGAT
GCTGGTGGCTCTGATGGGAGTTACAAGGGGACAAGCCATGTTTAAGGGCA
TCAAGGTATATGAAGCAATTGACGAATATGACGTGACGAAGTTCATGATA
GCGCCAGCCAGGGTAATGAGTCACGGTCAGAAGGCGACACCAGCCACGGG
TATCTTAGACGGTTTTGGACGTATCTTGGAGAAGAAGATTCGACTTCATG
ACTATGAAGAATGTCGACGGAACAGCAAGTCTTTCAAAGAAAATATTTTT
TTGTATTCCCAAAGAAGAGACTGGGGATGA
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protein sequence of Gcaud8425.t1

>Gcaud8425.t1 ID=Gcaud8425.t1|Name=Gcaud8425.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=160bp
MRRYADYTQILDTSQPEMWMAISGITCLSWISKREIQVNGILHWSILGRL
LREDPMVVVEDLPPTQMLVALMGVTRGQAMFKGIKVYEAIDEYDVTKFMI
APARVMSHGQKATPATGILDGFGRILEKKIRLHDYEECRRNSKSFKENIF
LYSQRRDWG*
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mRNA from alignment at NODE_248_length_34309_cov_4.396809:5826..6561-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8425.t1 ID=Gcaud8425.t1|Name=Gcaud8425.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=736bp|location=Sequence derived from alignment at NODE_248_length_34309_cov_4.396809:5826..6561- (Gracilaria caudata M_176_S67 male)
ATGCGCAGGTATGCAGACTATACTCAGATTTTGGATACTTCTCAACCCGA
GATGTGGATGGCGATATCCGGAATCACATGTTTATCCTGGATATCAAAGA
GAGAGATACAAGTGAATGGAATTCTGCATTGGAGTATTCTAGGGCGACTT
CTGAGTTTCCGGGGGGATCTCGGACTCTTAAGATTGAGAAACCAAAATCC
TATTATGAGGACAGAATGCAAATTTCACCAAAGAAACTTTCGCTACGCCC
CAAAACGATGGCCGTACCCTCGATAATGAGCCATTCGATATCCTTCGAAA
GCATGTGGCAGGTCGCCTAGGGAAACTGTAGTGTACTACAGGTTGAACTA
GAGTACATGAAGCAAAAGCTGGGGTTCAATGATCGTAATTGATCCATTTT
GCCGATACAGGAGAGGATCCAATGGTGGTGGTTGAGGATCTTCCACCAAC
TCAGATGCTGGTGGCTCTGATGGGAGTTACAAGGGGACAAGCCATGTTTA
AGGGCATCAAGGTATATGAAGCAATTGACGAATATGACGTGACGAAGTTC
ATGATAGCGCCAGCCAGGGTAATGAGTCACGGTCAGAAGGCGACACCAGC
CACGGGTATCTTAGACGGTTTTGGACGTATCTTGGAGAAGAAGATTCGAC
TTCATGACTATGAAGAATGTCGACGGAACAGCAAGTCTTTCAAAGAAAAT
ATTTTTTTGTATTCCCAAAGAAGAGACTGGGGATGA
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Coding sequence (CDS) from alignment at NODE_248_length_34309_cov_4.396809:5826..6561-

>Gcaud8425.t1 ID=Gcaud8425.t1|Name=Gcaud8425.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=480bp|location=Sequence derived from alignment at NODE_248_length_34309_cov_4.396809:5826..6561- (Gracilaria caudata M_176_S67 male)
ATGCGCAGGTATGCAGACTATACTCAGATTTTGGATACTTCTCAACCCGA
GATGTGGATGGCGATATCCGGAATCACATGTTTATCCTGGATATCAAAGA
GAGAGATACAAGTGAATGGAATTCTGCATTGGAGTATTCTAGGGCGACTT
CTGAGAGAGGATCCAATGGTGGTGGTTGAGGATCTTCCACCAACTCAGAT
GCTGGTGGCTCTGATGGGAGTTACAAGGGGACAAGCCATGTTTAAGGGCA
TCAAGGTATATGAAGCAATTGACGAATATGACGTGACGAAGTTCATGATA
GCGCCAGCCAGGGTAATGAGTCACGGTCAGAAGGCGACACCAGCCACGGG
TATCTTAGACGGTTTTGGACGTATCTTGGAGAAGAAGATTCGACTTCATG
ACTATGAAGAATGTCGACGGAACAGCAAGTCTTTCAAAGAAAATATTTTT
TTGTATTCCCAAAGAAGAGACTGGGGATGA
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