Gcaud3856.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3856.t1
Unique Name	Gcaud3856.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	250

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2414_length_5727_cov_4.870298	contig	NODE_2414_length_5727_cov_4.870298:2..749 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707742.1
Preferred name	XPO1
PFAMs	CRM1_C,IBN_N,Xpo1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03939,ko:K14290
KEGG TC	1.I.1,3.D.1.6
KEGG Pathway	ko00190,ko01100,ko03008,ko03013,ko04013,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,ko05164,ko05166,ko05169,map00190,map01100,map03008,map03013,map04013,map04714,map04723,map04932,map05010,map05012,map05016,map05164,map05166,map05169
KEGG Module	M00143
GOs	GO:0000003,GO:0000054,GO:0000055,GO:0000056,GO:0000122,GO:0000775,GO:0000776,GO:0000902,GO:0000904,GO:0003006,GO:0003674,GO:0005049,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0005911,GO:0006355,GO:0006357,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0007275,GO:0008104,GO:0008150,GO:0008565,GO:0009266,GO:0009408,GO:0009506,GO:0009553,GO:0009555,GO:0009628,GO:0009653,GO:0009826,GO:0009846,GO:0009856,GO:0009860,GO:0009889,GO:0009890,GO:0009892,GO:0009932,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016049,GO:0019219,GO:0019222,GO:0019904,GO:0022414,GO:0022613,GO:0030054,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031503,GO:0032386,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032989,GO:0032991,GO:0033036,GO:0033157,GO:0033750,GO:0034613,GO:0040007,GO:0042221,GO:0042254,GO:0042493,GO:0042886,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044444,GO:0044446,GO:0044464,GO:0044706,GO:0045184,GO:0045892,GO:0045934,GO:0046822,GO:0046825,GO:0046907,GO:0048229,GO:0048468,GO:0048519,GO:0048523,GO:0048588,GO:0048589,GO:0048856,GO:0048868,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051252,GO:0051253,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0055044,GO:0060255,GO:0060341,GO:0060560,GO:0065007,GO:0070201,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840,GO:0080090,GO:0090087,GO:0098687,GO:0140104,GO:0140142,GO:1902679,GO:1903506,GO:1903507,GO:1903827,GO:2000112,GO:2000113,GO:2001141
Evalue	1.89e-71
EggNOG OGs	COG5101@1\|root,KOG2020@2759\|Eukaryota
Description	nuclear export signal receptor activity
COG category	UY
BRITE	ko00000,ko00001,ko00002,ko03009,ko03016,ko03019,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3856	Gcaud3856	Gracilaria caudata M_176_S67 male	gene	NODE_2414_length_5727_cov_4.870298 2..749 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3856.t1.CDS1	Gcaud3856.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2414_length_5727_cov_4.870298 2..749 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3856.t1.exon1	Gcaud3856.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2414_length_5727_cov_4.870298 2..749 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3856.t1.stop1	Gcaud3856.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2414_length_5727_cov_4.870298 747..749 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3856.t1	Gcaud3856.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2414_length_5727_cov_4.870298 2..749 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2414_length_5727_cov_4.870298:2..749+
coding sequence from alignment at NODE_2414_length_5727_cov_4.870298:2..749+

mRNA sequence

>Gcaud3856.t1 ID=Gcaud3856.t1|Name=Gcaud3856.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=250bp
XEDFPDARINFFLLLRSVNQHNFAALFALSENPAAAEADFRFVINAIVWA
FKHTERNVAETGLQILLEMLRKVDSSPFVNYFYKIYFKLILNDVLSVMTD
TFHRPGFKLHAMILMHLIGAVGSGRITEPIWDEAEQDQVACATANGSAPA
SNAVFLHNHLLKILREAFPNLTETQVTDIVKKLLSSVDEKMFKIHLRDFL
VQTKEFSSGDNTELFDEEHKLQQLETEKLEKERLARTPGLLPPSRVQSH*

spliced messenger RNA

>Gcaud3856.t1 ID=Gcaud3856.t1|Name=Gcaud3856.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=748bp|location=Sequence derived from alignment at NODE_2414_length_5727_cov_4.870298:2..749+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TGAAGACTTTCCCGACGCTCGAATCAATTTCTTTTTACTCCTGAGGTCCG
TTAACCAACATAATTTCGCTGCTCTCTTTGCTCTCAGTGAAAACCCTGCA
GCCGCGGAAGCAGACTTTCGCTTCGTGATCAACGCCATCGTATGGGCTTT
TAAGCACACGGAAAGAAACGTGGCGGAAACAGGTTTGCAGATTCTTCTAG
AGATGTTGCGGAAAGTGGACAGCTCGCCGTTCGTGAACTATTTCTACAAG
ATATACTTCAAATTGATTCTGAACGACGTTCTATCCGTTATGACGGATAC
CTTCCACCGACCAGGATTTAAACTCCATGCTATGATTCTTATGCACCTGA
TCGGTGCGGTCGGTTCTGGGCGGATCACGGAACCCATATGGGATGAAGCG
GAACAGGACCAGGTAGCATGCGCAACTGCAAACGGTTCTGCCCCTGCTAG
TAACGCAGTGTTTTTGCACAACCACCTGTTGAAAATTCTTAGAGAAGCCT
TCCCGAACTTGACAGAAACGCAGGTAACTGACATTGTGAAGAAACTTCTT
TCTTCCGTGGACGAAAAGATGTTCAAGATTCATTTGCGGGACTTCCTTGT
ACAGACAAAAGAGTTTTCTTCAGGTGACAATACGGAGTTGTTTGATGAGG
AGCACAAGCTACAACAATTGGAGACAGAAAAGTTGGAGAAGGAAAGACTT
GCTAGAACTCCTGGTCTTCTGCCCCCATCGAGAGTACAAAGTCATTAG

protein sequence of Gcaud3856.t1

>Gcaud3856.t1 ID=Gcaud3856.t1|Name=Gcaud3856.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=250bp
XEDFPDARINFFLLLRSVNQHNFAALFALSENPAAAEADFRFVINAIVWA
FKHTERNVAETGLQILLEMLRKVDSSPFVNYFYKIYFKLILNDVLSVMTD
TFHRPGFKLHAMILMHLIGAVGSGRITEPIWDEAEQDQVACATANGSAPA
SNAVFLHNHLLKILREAFPNLTETQVTDIVKKLLSSVDEKMFKIHLRDFL
VQTKEFSSGDNTELFDEEHKLQQLETEKLEKERLARTPGLLPPSRVQSH*

mRNA from alignment at NODE_2414_length_5727_cov_4.870298:2..749+

Legend: CDSpolypeptideexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3856.t1 ID=Gcaud3856.t1|Name=Gcaud3856.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=748bp|location=Sequence derived from alignment at NODE_2414_length_5727_cov_4.870298:2..749+ (Gracilaria caudata M_176_S67 male)
TGAAGACTTTCCCGACGCTCGAATCAATTTCTTTTTACTCCTGAGGTCCG
TTAACCAACATAATTTCGCTGCTCTCTTTGCTCTCAGTGAAAACCCTGCA
GCCGCGGAAGCAGACTTTCGCTTCGTGATCAACGCCATCGTATGGGCTTT
TAAGCACACGGAAAGAAACGTGGCGGAAACAGGTTTGCAGATTCTTCTAG
AGATGTTGCGGAAAGTGGACAGCTCGCCGTTCGTGAACTATTTCTACAAG
ATATACTTCAAATTGATTCTGAACGACGTTCTATCCGTTATGACGGATAC
CTTCCACCGACCAGGATTTAAACTCCATGCTATGATTCTTATGCACCTGA
TCGGTGCGGTCGGTTCTGGGCGGATCACGGAACCCATATGGGATGAAGCG
GAACAGGACCAGGTAGCATGCGCAACTGCAAACGGTTCTGCCCCTGCTAG
TAACGCAGTGTTTTTGCACAACCACCTGTTGAAAATTCTTAGAGAAGCCT
TCCCGAACTTGACAGAAACGCAGGTAACTGACATTGTGAAGAAACTTCTT
TCTTCCGTGGACGAAAAGATGTTCAAGATTCATTTGCGGGACTTCCTTGT
ACAGACAAAAGAGTTTTCTTCAGGTGACAATACGGAGTTGTTTGATGAGG
AGCACAAGCTACAACAATTGGAGACAGAAAAGTTGGAGAAGGAAAGACTT
GCTAGAACTCCTGGTCTTCTGCCCCCATCGAGAGTACAAAGTCATTAG

Coding sequence (CDS) from alignment at NODE_2414_length_5727_cov_4.870298:2..749+

>Gcaud3856.t1 ID=Gcaud3856.t1|Name=Gcaud3856.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=748bp|location=Sequence derived from alignment at NODE_2414_length_5727_cov_4.870298:2..749+ (Gracilaria caudata M_176_S67 male)
TGAAGACTTTCCCGACGCTCGAATCAATTTCTTTTTACTCCTGAGGTCCG
TTAACCAACATAATTTCGCTGCTCTCTTTGCTCTCAGTGAAAACCCTGCA
GCCGCGGAAGCAGACTTTCGCTTCGTGATCAACGCCATCGTATGGGCTTT
TAAGCACACGGAAAGAAACGTGGCGGAAACAGGTTTGCAGATTCTTCTAG
AGATGTTGCGGAAAGTGGACAGCTCGCCGTTCGTGAACTATTTCTACAAG
ATATACTTCAAATTGATTCTGAACGACGTTCTATCCGTTATGACGGATAC
CTTCCACCGACCAGGATTTAAACTCCATGCTATGATTCTTATGCACCTGA
TCGGTGCGGTCGGTTCTGGGCGGATCACGGAACCCATATGGGATGAAGCG
GAACAGGACCAGGTAGCATGCGCAACTGCAAACGGTTCTGCCCCTGCTAG
TAACGCAGTGTTTTTGCACAACCACCTGTTGAAAATTCTTAGAGAAGCCT
TCCCGAACTTGACAGAAACGCAGGTAACTGACATTGTGAAGAAACTTCTT
TCTTCCGTGGACGAAAAGATGTTCAAGATTCATTTGCGGGACTTCCTTGT
ACAGACAAAAGAGTTTTCTTCAGGTGACAATACGGAGTTGTTTGATGAGG
AGCACAAGCTACAACAATTGGAGACAGAAAAGTTGGAGAAGGAAAGACTT
GCTAGAACTCCTGGTCTTCTGCCCCCATCGAGAGTACAAAGTCATTAG