Gcaud7634.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7634.t1
Unique NameGcaud7634.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length106
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_240_length_34680_cov_4.545549contigNODE_240_length_34680_cov_4.545549:2871..3287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMD057CT
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0003756,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006807,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009765,GO:0009987,GO:0010206,GO:0015979,GO:0016020,GO:0016853,GO:0016860,GO:0016864,GO:0019538,GO:0019684,GO:0030091,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0071704,GO:0140096,GO:1901564
Evalue2.04e-20
EggNOG OGs2A3SY@1|root,2RY5W@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7634Gcaud7634Gracilaria caudata M_176_S67 malegeneNODE_240_length_34680_cov_4.545549 2871..3287 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7634.t1Gcaud7634.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_240_length_34680_cov_4.545549 2871..3287 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7634.t1.stop1Gcaud7634.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_240_length_34680_cov_4.545549 2871..2873 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7634.t1.CDS1Gcaud7634.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_240_length_34680_cov_4.545549 2871..2898 -
Gcaud7634.t1.CDS2Gcaud7634.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_240_length_34680_cov_4.545549 2998..3287 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7634.t1.exon1Gcaud7634.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_240_length_34680_cov_4.545549 2871..2898 -
Gcaud7634.t1.exon2Gcaud7634.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_240_length_34680_cov_4.545549 2998..3287 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7634.t1.intron1Gcaud7634.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_240_length_34680_cov_4.545549 2899..2997 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7634.t1.start1Gcaud7634.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_240_length_34680_cov_4.545549 3285..3287 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7634.t1 ID=Gcaud7634.t1|Name=Gcaud7634.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=106bp
MMDQNAVAIVATMVAGIGGGIALVAWTENQGKRTELRANIQPCAECGGET
TTVCNVCNGSTKDPLDASKLCSYCEGNGSIKCFNCSGSGIQPRFLDRLSP
EDFMD*
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spliced messenger RNA

>Gcaud7634.t1 ID=Gcaud7634.t1|Name=Gcaud7634.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=318bp|location=Sequence derived from alignment at NODE_240_length_34680_cov_4.545549:2871..3287- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGATCAAAACGCGGTGGCCATTGTCGCCACAATGGTCGCAGGAAT
TGGAGGTGGTATTGCATTGGTCGCATGGACGGAGAATCAAGGCAAACGCA
CAGAGCTCAGAGCAAACATTCAACCTTGTGCGGAGTGTGGAGGCGAGACC
ACAACTGTGTGTAATGTGTGCAACGGTTCAACCAAGGATCCGTTGGATGC
CTCCAAGTTATGTTCATATTGCGAGGGTAATGGTAGCATAAAATGCTTCA
ACTGCTCTGGCTCTGGCATTCAACCCAGATTTCTTGACAGATTATCTCCT
GAGGACTTTATGGACTAG
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protein sequence of Gcaud7634.t1

>Gcaud7634.t1 ID=Gcaud7634.t1|Name=Gcaud7634.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=106bp
MMDQNAVAIVATMVAGIGGGIALVAWTENQGKRTELRANIQPCAECGGET
TTVCNVCNGSTKDPLDASKLCSYCEGNGSIKCFNCSGSGIQPRFLDRLSP
EDFMD*
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mRNA from alignment at NODE_240_length_34680_cov_4.545549:2871..3287-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7634.t1 ID=Gcaud7634.t1|Name=Gcaud7634.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=417bp|location=Sequence derived from alignment at NODE_240_length_34680_cov_4.545549:2871..3287- (Gracilaria caudata M_176_S67 male)
ATGATGGATCAAAACGCGGTGGCCATTGTCGCCACAATGGTCGCAGGAAT
TGGAGGTGGTATTGCATTGGTCGCATGGACGGAGAATCAAGGCAAACGCA
CAGAGCTCAGAGCAAACATTCAACCTTGTGCGGAGTGTGGAGGCGAGACC
ACAACTGTGTGTAATGTGTGCAACGGTTCAACCAAGGATCCGTTGGATGC
CTCCAAGTTATGTTCATATTGCGAGGGTAATGGTAGCATAAAATGCTTCA
ACTGCTCTGGCTCTGGCATTCAACCCAGATTTCTTGACAGGTGTGTTTCG
CTGTTCCTCTTCGAGCAACGCCTCTAGAAGCTCAAAAGCACTAACATTTA
CAAACTAACCAAATATAATCATATGTCCTTGTACACCAGATTATCTCCTG
AGGACTTTATGGACTAG
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Coding sequence (CDS) from alignment at NODE_240_length_34680_cov_4.545549:2871..3287-

>Gcaud7634.t1 ID=Gcaud7634.t1|Name=Gcaud7634.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=318bp|location=Sequence derived from alignment at NODE_240_length_34680_cov_4.545549:2871..3287- (Gracilaria caudata M_176_S67 male)
ATGATGGATCAAAACGCGGTGGCCATTGTCGCCACAATGGTCGCAGGAAT
TGGAGGTGGTATTGCATTGGTCGCATGGACGGAGAATCAAGGCAAACGCA
CAGAGCTCAGAGCAAACATTCAACCTTGTGCGGAGTGTGGAGGCGAGACC
ACAACTGTGTGTAATGTGTGCAACGGTTCAACCAAGGATCCGTTGGATGC
CTCCAAGTTATGTTCATATTGCGAGGGTAATGGTAGCATAAAATGCTTCA
ACTGCTCTGGCTCTGGCATTCAACCCAGATTTCTTGACAGATTATCTCCT
GAGGACTTTATGGACTAG
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