Gcaud1880.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1880.t1
Unique Name	Gcaud1880.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	280

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_238_length_34707_cov_4.869829	contig	NODE_238_length_34707_cov_4.869829:15815..16654 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1880	Gcaud1880	Gracilaria caudata M_176_S67 male	gene	NODE_238_length_34707_cov_4.869829 15815..16654 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1880.t1.stop1	Gcaud1880.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_238_length_34707_cov_4.869829 15815..15817 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1880.t1.CDS1	Gcaud1880.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_238_length_34707_cov_4.869829 15815..16654 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1880.t1.exon1	Gcaud1880.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_238_length_34707_cov_4.869829 15815..16654 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1880.t1.start1	Gcaud1880.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_238_length_34707_cov_4.869829 16652..16654 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1880.t1	Gcaud1880.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_238_length_34707_cov_4.869829 15815..16654 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_238_length_34707_cov_4.869829:15815..16654-
coding sequence from alignment at NODE_238_length_34707_cov_4.869829:15815..16654-

mRNA sequence

>Gcaud1880.t1 ID=Gcaud1880.t1|Name=Gcaud1880.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=280bp
LIELASHTISLDECVPTDHAFTKSESPGLAIVDYPDASANGQLMLEYIQR
RLSWSHLYGPHQPQSDLCAILAAALSAYGSPPGFSALLLDTAHDFLHVAW
VGSCGFVIVRDDAIVYRSYGDRLGRSALEHALKEPHDPPPPNATTTPTPL
TPDSLAAQKRPHRDTVSTSDIHVDFFSLQDNDLVIAGTDGFFSNVSERQI
LAFVRPVPDAEDPTLAIANATCLGSWRYDDVHFISYYLAIIAANFATATN
SQPYLPFPFPPSPHLDDVTVACISSSFAL*

spliced messenger RNA

>Gcaud1880.t1 ID=Gcaud1880.t1|Name=Gcaud1880.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=840bp|location=Sequence derived from alignment at NODE_238_length_34707_cov_4.869829:15815..16654- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGATTGAGCTGGCGTCTCACACAATTTCTCTCGACGAATGCGTCCCCAC
GGATCACGCTTTCACGAAGAGCGAGTCGCCAGGTCTCGCCATCGTGGACT
ACCCAGATGCCTCCGCAAACGGTCAACTAATGTTGGAGTACATACAGCGT
CGTCTCTCATGGAGCCATCTGTACGGGCCACATCAACCGCAATCTGATCT
GTGCGCCATTCTGGCCGCCGCACTGTCTGCGTATGGTAGTCCACCCGGGT
TCTCCGCTTTGCTGCTCGACACTGCGCATGATTTCTTGCACGTGGCTTGG
GTCGGTTCCTGTGGATTTGTCATCGTGCGAGATGATGCAATTGTGTACAG
AAGTTACGGTGACCGTCTGGGGCGGTCAGCACTTGAACACGCGCTGAAGG
AGCCTCACGATCCACCTCCACCAAACGCCACGACCACCCCTACCCCGCTT
ACTCCCGACTCTTTGGCAGCACAGAAACGGCCTCATCGCGACACAGTCAG
CACTTCAGATATTCACGTTGACTTTTTCTCATTGCAAGACAACGACCTTG
TCATCGCCGGCACAGATGGTTTTTTCTCCAACGTGAGCGAGCGTCAGATT
CTTGCGTTCGTGCGCCCGGTTCCGGATGCAGAAGATCCTACGCTGGCCAT
TGCCAATGCAACCTGTCTGGGAAGCTGGCGGTACGACGATGTACACTTCA
TCTCGTACTACCTGGCGATAATTGCTGCTAACTTTGCCACAGCTACTAAC
TCCCAACCCTATCTGCCTTTTCCTTTTCCACCGAGTCCGCACCTAGACGA
CGTCACTGTCGCATGTATATCAAGTTCCTTTGCTTTGTAA

protein sequence of Gcaud1880.t1

>Gcaud1880.t1 ID=Gcaud1880.t1|Name=Gcaud1880.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=280bp
LIELASHTISLDECVPTDHAFTKSESPGLAIVDYPDASANGQLMLEYIQR
RLSWSHLYGPHQPQSDLCAILAAALSAYGSPPGFSALLLDTAHDFLHVAW
VGSCGFVIVRDDAIVYRSYGDRLGRSALEHALKEPHDPPPPNATTTPTPL
TPDSLAAQKRPHRDTVSTSDIHVDFFSLQDNDLVIAGTDGFFSNVSERQI
LAFVRPVPDAEDPTLAIANATCLGSWRYDDVHFISYYLAIIAANFATATN
SQPYLPFPFPPSPHLDDVTVACISSSFAL*

mRNA from alignment at NODE_238_length_34707_cov_4.869829:15815..16654-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1880.t1 ID=Gcaud1880.t1|Name=Gcaud1880.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=840bp|location=Sequence derived from alignment at NODE_238_length_34707_cov_4.869829:15815..16654- (Gracilaria caudata M_176_S67 male)
CTGATTGAGCTGGCGTCTCACACAATTTCTCTCGACGAATGCGTCCCCAC
GGATCACGCTTTCACGAAGAGCGAGTCGCCAGGTCTCGCCATCGTGGACT
ACCCAGATGCCTCCGCAAACGGTCAACTAATGTTGGAGTACATACAGCGT
CGTCTCTCATGGAGCCATCTGTACGGGCCACATCAACCGCAATCTGATCT
GTGCGCCATTCTGGCCGCCGCACTGTCTGCGTATGGTAGTCCACCCGGGT
TCTCCGCTTTGCTGCTCGACACTGCGCATGATTTCTTGCACGTGGCTTGG
GTCGGTTCCTGTGGATTTGTCATCGTGCGAGATGATGCAATTGTGTACAG
AAGTTACGGTGACCGTCTGGGGCGGTCAGCACTTGAACACGCGCTGAAGG
AGCCTCACGATCCACCTCCACCAAACGCCACGACCACCCCTACCCCGCTT
ACTCCCGACTCTTTGGCAGCACAGAAACGGCCTCATCGCGACACAGTCAG
CACTTCAGATATTCACGTTGACTTTTTCTCATTGCAAGACAACGACCTTG
TCATCGCCGGCACAGATGGTTTTTTCTCCAACGTGAGCGAGCGTCAGATT
CTTGCGTTCGTGCGCCCGGTTCCGGATGCAGAAGATCCTACGCTGGCCAT
TGCCAATGCAACCTGTCTGGGAAGCTGGCGGTACGACGATGTACACTTCA
TCTCGTACTACCTGGCGATAATTGCTGCTAACTTTGCCACAGCTACTAAC
TCCCAACCCTATCTGCCTTTTCCTTTTCCACCGAGTCCGCACCTAGACGA
CGTCACTGTCGCATGTATATCAAGTTCCTTTGCTTTGTAA

Coding sequence (CDS) from alignment at NODE_238_length_34707_cov_4.869829:15815..16654-

>Gcaud1880.t1 ID=Gcaud1880.t1|Name=Gcaud1880.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=840bp|location=Sequence derived from alignment at NODE_238_length_34707_cov_4.869829:15815..16654- (Gracilaria caudata M_176_S67 male)
CTGATTGAGCTGGCGTCTCACACAATTTCTCTCGACGAATGCGTCCCCAC
GGATCACGCTTTCACGAAGAGCGAGTCGCCAGGTCTCGCCATCGTGGACT
ACCCAGATGCCTCCGCAAACGGTCAACTAATGTTGGAGTACATACAGCGT
CGTCTCTCATGGAGCCATCTGTACGGGCCACATCAACCGCAATCTGATCT
GTGCGCCATTCTGGCCGCCGCACTGTCTGCGTATGGTAGTCCACCCGGGT
TCTCCGCTTTGCTGCTCGACACTGCGCATGATTTCTTGCACGTGGCTTGG
GTCGGTTCCTGTGGATTTGTCATCGTGCGAGATGATGCAATTGTGTACAG
AAGTTACGGTGACCGTCTGGGGCGGTCAGCACTTGAACACGCGCTGAAGG
AGCCTCACGATCCACCTCCACCAAACGCCACGACCACCCCTACCCCGCTT
ACTCCCGACTCTTTGGCAGCACAGAAACGGCCTCATCGCGACACAGTCAG
CACTTCAGATATTCACGTTGACTTTTTCTCATTGCAAGACAACGACCTTG
TCATCGCCGGCACAGATGGTTTTTTCTCCAACGTGAGCGAGCGTCAGATT
CTTGCGTTCGTGCGCCCGGTTCCGGATGCAGAAGATCCTACGCTGGCCAT
TGCCAATGCAACCTGTCTGGGAAGCTGGCGGTACGACGATGTACACTTCA
TCTCGTACTACCTGGCGATAATTGCTGCTAACTTTGCCACAGCTACTAAC
TCCCAACCCTATCTGCCTTTTCCTTTTCCACCGAGTCCGCACCTAGACGA
CGTCACTGTCGCATGTATATCAAGTTCCTTTGCTTTGTAA