Gcaud83.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud83.t1
Unique Name	Gcaud83.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	492

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2338_length_6041_cov_4.872941	contig	NODE_2338_length_6041_cov_4.872941:1018..2493 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud83	Gcaud83	Gracilaria caudata M_176_S67 male	gene	NODE_2338_length_6041_cov_4.872941 1018..2493 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud83.t1.stop1	Gcaud83.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2338_length_6041_cov_4.872941 1018..1020 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud83.t1.CDS1	Gcaud83.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2338_length_6041_cov_4.872941 1018..2493 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud83.t1.exon1	Gcaud83.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2338_length_6041_cov_4.872941 1018..2493 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud83.t1.start1	Gcaud83.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2338_length_6041_cov_4.872941 2491..2493 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud83.t1	Gcaud83.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2338_length_6041_cov_4.872941 1018..2493 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2338_length_6041_cov_4.872941:1018..2493-
coding sequence from alignment at NODE_2338_length_6041_cov_4.872941:1018..2493-

mRNA sequence

>Gcaud83.t1 ID=Gcaud83.t1|Name=Gcaud83.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=492bp
MARITGDEAMILAVIEAMKVVLVAACISALVNLDNIWSMNILRRRGEVIL
YQNDIGRVTDRAFSKVIRSLYSYGLRRDTLDKGTWEALNANHPRRHGLLR
ASGGGKRIVSVRSALLAASVMVSVADVLALFSLSTEGKDVADKPEFGVRI
QESNDVPIGGRMEWYNPHEGQLRYEYVLRRLGRRMEFRNESELKIDVPRR
LDPNQDEKWPFTLTLSENDKYATVFSRDFTSEETANFSEAVGQVTGTTES
GKVLRHYKMAKRDAERKVCSGSISGVSTSGVNASAVFCYTDELRNTSCVN
KKDGESVPFTMKCSEIRVERFGGNVIFGNDSIWWLNRHAVRGEKSLLQMN
SLRAYKRDDVSPSALIVAAVLTEFPSQVVLVNRQFYTDVSVVIVPNWLII
SSATVLGVILLSSVSASMYAKVKDLVVLSSWQELLISNLLEPLDCLNRAR
KREFRCVVGNGDECSEKKYRFYVEPDAEITPVRLVRRQDIG*

spliced messenger RNA

>Gcaud83.t1 ID=Gcaud83.t1|Name=Gcaud83.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1476bp|location=Sequence derived from alignment at NODE_2338_length_6041_cov_4.872941:1018..2493- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCGAATTACCGGAGATGAAGCCATGATACTAGCCGTCATCGAGGC
AATGAAGGTTGTTCTCGTTGCTGCATGCATATCCGCTTTAGTAAACCTTG
ACAATATATGGAGCATGAATATCTTACGCAGACGTGGCGAAGTCATCCTA
TACCAAAACGATATCGGGCGGGTGACGGACAGGGCATTCTCGAAAGTCAT
TAGATCTCTCTATTCGTATGGGCTGAGACGCGACACACTTGACAAGGGAA
CATGGGAGGCTTTGAATGCAAATCACCCGAGGCGCCACGGACTTTTGAGA
GCCTCTGGTGGCGGAAAAAGAATAGTAAGCGTCCGCAGCGCACTCTTAGC
GGCCAGTGTTATGGTGTCAGTTGCAGATGTGCTTGCTCTGTTTTCGCTCT
CTACTGAAGGAAAAGATGTTGCTGATAAACCTGAATTTGGAGTTCGGATT
CAAGAGTCCAATGATGTGCCCATCGGAGGGCGAATGGAATGGTATAACCC
GCACGAAGGTCAGCTTCGATATGAATATGTGCTGCGCAGACTAGGAAGAA
GGATGGAGTTCAGGAACGAAAGTGAGTTAAAGATTGATGTTCCCCGCCGG
CTCGATCCGAATCAGGATGAGAAATGGCCTTTCACGCTTACTTTGTCCGA
AAACGACAAGTATGCCACGGTATTTAGCAGGGATTTTACTTCTGAAGAGA
CAGCAAATTTTAGTGAGGCTGTCGGTCAGGTGACTGGCACGACCGAGAGT
GGCAAAGTTCTACGTCACTACAAAATGGCAAAGAGGGACGCTGAGCGAAA
GGTATGTTCTGGGAGCATTAGCGGAGTCAGCACGTCTGGAGTTAACGCTT
CCGCTGTTTTCTGCTACACGGATGAGCTCAGGAACACATCGTGTGTAAAC
AAAAAAGATGGTGAATCTGTTCCGTTTACAATGAAGTGTTCGGAGATCCG
AGTGGAGCGGTTTGGAGGCAATGTGATTTTTGGCAACGACTCTATATGGT
GGTTGAATAGGCATGCCGTCAGGGGAGAGAAGAGCCTGCTGCAGATGAAC
TCACTGCGGGCGTACAAGAGAGATGATGTATCTCCCAGTGCTTTGATTGT
AGCGGCCGTGCTCACCGAGTTTCCATCGCAGGTTGTGCTGGTTAACAGAC
AGTTTTACACCGATGTGAGCGTGGTGATCGTACCGAACTGGTTGATCATC
AGTTCCGCCACCGTGCTTGGCGTTATCCTCCTGTCGAGCGTTTCCGCGTC
AATGTACGCAAAAGTGAAGGACCTTGTGGTACTGAGCAGCTGGCAAGAAC
TGCTTATCTCCAACTTGCTCGAGCCTCTCGATTGCTTGAACCGAGCGCGC
AAACGAGAGTTTCGATGTGTGGTAGGGAATGGCGATGAGTGCTCGGAGAA
AAAATACCGCTTCTATGTGGAACCAGATGCAGAAATTACTCCAGTTAGGT
TGGTCCGACGTCAAGACATTGGATGA

protein sequence of Gcaud83.t1

>Gcaud83.t1 ID=Gcaud83.t1|Name=Gcaud83.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=492bp
MARITGDEAMILAVIEAMKVVLVAACISALVNLDNIWSMNILRRRGEVIL
YQNDIGRVTDRAFSKVIRSLYSYGLRRDTLDKGTWEALNANHPRRHGLLR
ASGGGKRIVSVRSALLAASVMVSVADVLALFSLSTEGKDVADKPEFGVRI
QESNDVPIGGRMEWYNPHEGQLRYEYVLRRLGRRMEFRNESELKIDVPRR
LDPNQDEKWPFTLTLSENDKYATVFSRDFTSEETANFSEAVGQVTGTTES
GKVLRHYKMAKRDAERKVCSGSISGVSTSGVNASAVFCYTDELRNTSCVN
KKDGESVPFTMKCSEIRVERFGGNVIFGNDSIWWLNRHAVRGEKSLLQMN
SLRAYKRDDVSPSALIVAAVLTEFPSQVVLVNRQFYTDVSVVIVPNWLII
SSATVLGVILLSSVSASMYAKVKDLVVLSSWQELLISNLLEPLDCLNRAR
KREFRCVVGNGDECSEKKYRFYVEPDAEITPVRLVRRQDIG*

mRNA from alignment at NODE_2338_length_6041_cov_4.872941:1018..2493-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud83.t1 ID=Gcaud83.t1|Name=Gcaud83.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1476bp|location=Sequence derived from alignment at NODE_2338_length_6041_cov_4.872941:1018..2493- (Gracilaria caudata M_176_S67 male)
ATGGCTCGAATTACCGGAGATGAAGCCATGATACTAGCCGTCATCGAGGC
AATGAAGGTTGTTCTCGTTGCTGCATGCATATCCGCTTTAGTAAACCTTG
ACAATATATGGAGCATGAATATCTTACGCAGACGTGGCGAAGTCATCCTA
TACCAAAACGATATCGGGCGGGTGACGGACAGGGCATTCTCGAAAGTCAT
TAGATCTCTCTATTCGTATGGGCTGAGACGCGACACACTTGACAAGGGAA
CATGGGAGGCTTTGAATGCAAATCACCCGAGGCGCCACGGACTTTTGAGA
GCCTCTGGTGGCGGAAAAAGAATAGTAAGCGTCCGCAGCGCACTCTTAGC
GGCCAGTGTTATGGTGTCAGTTGCAGATGTGCTTGCTCTGTTTTCGCTCT
CTACTGAAGGAAAAGATGTTGCTGATAAACCTGAATTTGGAGTTCGGATT
CAAGAGTCCAATGATGTGCCCATCGGAGGGCGAATGGAATGGTATAACCC
GCACGAAGGTCAGCTTCGATATGAATATGTGCTGCGCAGACTAGGAAGAA
GGATGGAGTTCAGGAACGAAAGTGAGTTAAAGATTGATGTTCCCCGCCGG
CTCGATCCGAATCAGGATGAGAAATGGCCTTTCACGCTTACTTTGTCCGA
AAACGACAAGTATGCCACGGTATTTAGCAGGGATTTTACTTCTGAAGAGA
CAGCAAATTTTAGTGAGGCTGTCGGTCAGGTGACTGGCACGACCGAGAGT
GGCAAAGTTCTACGTCACTACAAAATGGCAAAGAGGGACGCTGAGCGAAA
GGTATGTTCTGGGAGCATTAGCGGAGTCAGCACGTCTGGAGTTAACGCTT
CCGCTGTTTTCTGCTACACGGATGAGCTCAGGAACACATCGTGTGTAAAC
AAAAAAGATGGTGAATCTGTTCCGTTTACAATGAAGTGTTCGGAGATCCG
AGTGGAGCGGTTTGGAGGCAATGTGATTTTTGGCAACGACTCTATATGGT
GGTTGAATAGGCATGCCGTCAGGGGAGAGAAGAGCCTGCTGCAGATGAAC
TCACTGCGGGCGTACAAGAGAGATGATGTATCTCCCAGTGCTTTGATTGT
AGCGGCCGTGCTCACCGAGTTTCCATCGCAGGTTGTGCTGGTTAACAGAC
AGTTTTACACCGATGTGAGCGTGGTGATCGTACCGAACTGGTTGATCATC
AGTTCCGCCACCGTGCTTGGCGTTATCCTCCTGTCGAGCGTTTCCGCGTC
AATGTACGCAAAAGTGAAGGACCTTGTGGTACTGAGCAGCTGGCAAGAAC
TGCTTATCTCCAACTTGCTCGAGCCTCTCGATTGCTTGAACCGAGCGCGC
AAACGAGAGTTTCGATGTGTGGTAGGGAATGGCGATGAGTGCTCGGAGAA
AAAATACCGCTTCTATGTGGAACCAGATGCAGAAATTACTCCAGTTAGGT
TGGTCCGACGTCAAGACATTGGATGA

Coding sequence (CDS) from alignment at NODE_2338_length_6041_cov_4.872941:1018..2493-

>Gcaud83.t1 ID=Gcaud83.t1|Name=Gcaud83.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1476bp|location=Sequence derived from alignment at NODE_2338_length_6041_cov_4.872941:1018..2493- (Gracilaria caudata M_176_S67 male)
ATGGCTCGAATTACCGGAGATGAAGCCATGATACTAGCCGTCATCGAGGC
AATGAAGGTTGTTCTCGTTGCTGCATGCATATCCGCTTTAGTAAACCTTG
ACAATATATGGAGCATGAATATCTTACGCAGACGTGGCGAAGTCATCCTA
TACCAAAACGATATCGGGCGGGTGACGGACAGGGCATTCTCGAAAGTCAT
TAGATCTCTCTATTCGTATGGGCTGAGACGCGACACACTTGACAAGGGAA
CATGGGAGGCTTTGAATGCAAATCACCCGAGGCGCCACGGACTTTTGAGA
GCCTCTGGTGGCGGAAAAAGAATAGTAAGCGTCCGCAGCGCACTCTTAGC
GGCCAGTGTTATGGTGTCAGTTGCAGATGTGCTTGCTCTGTTTTCGCTCT
CTACTGAAGGAAAAGATGTTGCTGATAAACCTGAATTTGGAGTTCGGATT
CAAGAGTCCAATGATGTGCCCATCGGAGGGCGAATGGAATGGTATAACCC
GCACGAAGGTCAGCTTCGATATGAATATGTGCTGCGCAGACTAGGAAGAA
GGATGGAGTTCAGGAACGAAAGTGAGTTAAAGATTGATGTTCCCCGCCGG
CTCGATCCGAATCAGGATGAGAAATGGCCTTTCACGCTTACTTTGTCCGA
AAACGACAAGTATGCCACGGTATTTAGCAGGGATTTTACTTCTGAAGAGA
CAGCAAATTTTAGTGAGGCTGTCGGTCAGGTGACTGGCACGACCGAGAGT
GGCAAAGTTCTACGTCACTACAAAATGGCAAAGAGGGACGCTGAGCGAAA
GGTATGTTCTGGGAGCATTAGCGGAGTCAGCACGTCTGGAGTTAACGCTT
CCGCTGTTTTCTGCTACACGGATGAGCTCAGGAACACATCGTGTGTAAAC
AAAAAAGATGGTGAATCTGTTCCGTTTACAATGAAGTGTTCGGAGATCCG
AGTGGAGCGGTTTGGAGGCAATGTGATTTTTGGCAACGACTCTATATGGT
GGTTGAATAGGCATGCCGTCAGGGGAGAGAAGAGCCTGCTGCAGATGAAC
TCACTGCGGGCGTACAAGAGAGATGATGTATCTCCCAGTGCTTTGATTGT
AGCGGCCGTGCTCACCGAGTTTCCATCGCAGGTTGTGCTGGTTAACAGAC
AGTTTTACACCGATGTGAGCGTGGTGATCGTACCGAACTGGTTGATCATC
AGTTCCGCCACCGTGCTTGGCGTTATCCTCCTGTCGAGCGTTTCCGCGTC
AATGTACGCAAAAGTGAAGGACCTTGTGGTACTGAGCAGCTGGCAAGAAC
TGCTTATCTCCAACTTGCTCGAGCCTCTCGATTGCTTGAACCGAGCGCGC
AAACGAGAGTTTCGATGTGTGGTAGGGAATGGCGATGAGTGCTCGGAGAA
AAAATACCGCTTCTATGTGGAACCAGATGCAGAAATTACTCCAGTTAGGT
TGGTCCGACGTCAAGACATTGGATGA