Gcaud949.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud949.t1
Unique Name	Gcaud949.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	287

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2255_length_6293_cov_3.689777	contig	NODE_2255_length_6293_cov_3.689777:5425..6285 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5762.XP_002674126.1
Preferred name	pnk1
PFAMs	AAA_33,PNK3P
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08073,ko:K08075
GOs	GO:0000012,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006302,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016311,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0016791,GO:0019205,GO:0033554,GO:0034641,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046403,GO:0046404,GO:0046483,GO:0050896,GO:0051716,GO:0051731,GO:0051733,GO:0051734,GO:0071704,GO:0090304,GO:0097159,GO:0098501,GO:0098502,GO:0098503,GO:0098504,GO:0098506,GO:0098518,GO:1901360,GO:1901363
Evalue	7.65e-47
EggNOG OGs	COG0241@1\|root,KOG2134@2759\|Eukaryota
EC	2.7.1.78,3.1.3.32
Description	DNA-3'-diphospho-5'-guanosine diphosphatase
COG category	E
BRITE	ko00000,ko01000,ko01009,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud949	Gcaud949	Gracilaria caudata M_176_S67 male	gene	NODE_2255_length_6293_cov_3.689777 5425..6285 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud949.t1.stop1	Gcaud949.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2255_length_6293_cov_3.689777 5425..5427 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud949.t1.CDS1	Gcaud949.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2255_length_6293_cov_3.689777 5425..6285 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud949.t1.exon1	Gcaud949.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2255_length_6293_cov_3.689777 5425..6285 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud949.t1.start1	Gcaud949.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2255_length_6293_cov_3.689777 6283..6285 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud949.t1	Gcaud949.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2255_length_6293_cov_3.689777 5425..6285 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2255_length_6293_cov_3.689777:5425..6285-
coding sequence from alignment at NODE_2255_length_6293_cov_3.689777:5425..6285-

mRNA sequence

>Gcaud949.t1 ID=Gcaud949.t1|Name=Gcaud949.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=287bp
MWEEFVQLIGSVARIDAQRSFYVGDAAHRKARLGQHADFSDSDLRFSINI
GLSFRTPEQYFLGKVTEAVSADSLQGFDPRKTLEQQGEMFINETSDIGLL
LRNVVTPSSVVDDIIMGSSQGAEVAPVQTMILMHGFPASGKTTFVKRFLD
ARGYAWVNQDTLHTFTRCVRATRNELAAGKSVVIDNTNADRSARRKYIEV
AKAHDTNVKVIALNMGASRALSEHLNIVRERETKGECAHIPKVAYHAFQK
RRQIPQLDESIDAIGEVKFIPSFLSDRDKYMFTRLS*

spliced messenger RNA

>Gcaud949.t1 ID=Gcaud949.t1|Name=Gcaud949.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=861bp|location=Sequence derived from alignment at NODE_2255_length_6293_cov_3.689777:5425..6285- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGGAGGAGTTCGTGCAGCTCATCGGCTCTGTAGCTCGCATCGACGC
GCAACGCTCTTTTTACGTGGGTGATGCAGCGCACAGAAAAGCGCGTCTAG
GTCAACACGCCGACTTTTCGGACAGTGATCTTCGTTTCAGCATCAACATC
GGCCTTTCATTTCGCACTCCAGAGCAGTACTTTCTGGGAAAGGTCACAGA
AGCGGTATCTGCAGACTCGTTGCAAGGGTTTGATCCCCGCAAGACGTTGG
AGCAACAAGGCGAAATGTTCATCAACGAAACGTCCGATATAGGGCTGTTG
CTGAGAAACGTGGTCACGCCCTCGTCGGTGGTGGATGACATTATTATGGG
CTCCTCGCAAGGCGCTGAAGTTGCTCCCGTGCAAACAATGATTTTAATGC
ACGGCTTTCCCGCTTCGGGCAAAACCACGTTTGTGAAGAGATTCCTCGAT
GCGAGGGGATACGCGTGGGTGAATCAGGACACGCTGCACACATTTACAAG
ATGCGTTCGCGCCACAAGAAATGAGCTGGCGGCAGGCAAGAGCGTGGTGA
TTGACAACACCAATGCGGATCGAAGCGCGCGACGCAAGTACATTGAGGTT
GCAAAGGCACACGACACAAACGTGAAGGTGATTGCTCTCAACATGGGCGC
CTCTCGCGCGCTGTCGGAGCATTTGAATATTGTGCGGGAGCGAGAGACAA
AGGGCGAGTGCGCACACATTCCAAAAGTGGCGTATCACGCGTTCCAGAAG
CGAAGACAGATTCCGCAACTGGACGAATCGATCGATGCGATCGGCGAGGT
GAAGTTCATTCCGTCGTTCTTGTCAGATCGTGACAAATACATGTTTACCA
GGCTCTCGTAA

protein sequence of Gcaud949.t1

>Gcaud949.t1 ID=Gcaud949.t1|Name=Gcaud949.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=287bp
MWEEFVQLIGSVARIDAQRSFYVGDAAHRKARLGQHADFSDSDLRFSINI
GLSFRTPEQYFLGKVTEAVSADSLQGFDPRKTLEQQGEMFINETSDIGLL
LRNVVTPSSVVDDIIMGSSQGAEVAPVQTMILMHGFPASGKTTFVKRFLD
ARGYAWVNQDTLHTFTRCVRATRNELAAGKSVVIDNTNADRSARRKYIEV
AKAHDTNVKVIALNMGASRALSEHLNIVRERETKGECAHIPKVAYHAFQK
RRQIPQLDESIDAIGEVKFIPSFLSDRDKYMFTRLS*

mRNA from alignment at NODE_2255_length_6293_cov_3.689777:5425..6285-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud949.t1 ID=Gcaud949.t1|Name=Gcaud949.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=861bp|location=Sequence derived from alignment at NODE_2255_length_6293_cov_3.689777:5425..6285- (Gracilaria caudata M_176_S67 male)
ATGTGGGAGGAGTTCGTGCAGCTCATCGGCTCTGTAGCTCGCATCGACGC
GCAACGCTCTTTTTACGTGGGTGATGCAGCGCACAGAAAAGCGCGTCTAG
GTCAACACGCCGACTTTTCGGACAGTGATCTTCGTTTCAGCATCAACATC
GGCCTTTCATTTCGCACTCCAGAGCAGTACTTTCTGGGAAAGGTCACAGA
AGCGGTATCTGCAGACTCGTTGCAAGGGTTTGATCCCCGCAAGACGTTGG
AGCAACAAGGCGAAATGTTCATCAACGAAACGTCCGATATAGGGCTGTTG
CTGAGAAACGTGGTCACGCCCTCGTCGGTGGTGGATGACATTATTATGGG
CTCCTCGCAAGGCGCTGAAGTTGCTCCCGTGCAAACAATGATTTTAATGC
ACGGCTTTCCCGCTTCGGGCAAAACCACGTTTGTGAAGAGATTCCTCGAT
GCGAGGGGATACGCGTGGGTGAATCAGGACACGCTGCACACATTTACAAG
ATGCGTTCGCGCCACAAGAAATGAGCTGGCGGCAGGCAAGAGCGTGGTGA
TTGACAACACCAATGCGGATCGAAGCGCGCGACGCAAGTACATTGAGGTT
GCAAAGGCACACGACACAAACGTGAAGGTGATTGCTCTCAACATGGGCGC
CTCTCGCGCGCTGTCGGAGCATTTGAATATTGTGCGGGAGCGAGAGACAA
AGGGCGAGTGCGCACACATTCCAAAAGTGGCGTATCACGCGTTCCAGAAG
CGAAGACAGATTCCGCAACTGGACGAATCGATCGATGCGATCGGCGAGGT
GAAGTTCATTCCGTCGTTCTTGTCAGATCGTGACAAATACATGTTTACCA
GGCTCTCGTAA

Coding sequence (CDS) from alignment at NODE_2255_length_6293_cov_3.689777:5425..6285-

>Gcaud949.t1 ID=Gcaud949.t1|Name=Gcaud949.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=861bp|location=Sequence derived from alignment at NODE_2255_length_6293_cov_3.689777:5425..6285- (Gracilaria caudata M_176_S67 male)
ATGTGGGAGGAGTTCGTGCAGCTCATCGGCTCTGTAGCTCGCATCGACGC
GCAACGCTCTTTTTACGTGGGTGATGCAGCGCACAGAAAAGCGCGTCTAG
GTCAACACGCCGACTTTTCGGACAGTGATCTTCGTTTCAGCATCAACATC
GGCCTTTCATTTCGCACTCCAGAGCAGTACTTTCTGGGAAAGGTCACAGA
AGCGGTATCTGCAGACTCGTTGCAAGGGTTTGATCCCCGCAAGACGTTGG
AGCAACAAGGCGAAATGTTCATCAACGAAACGTCCGATATAGGGCTGTTG
CTGAGAAACGTGGTCACGCCCTCGTCGGTGGTGGATGACATTATTATGGG
CTCCTCGCAAGGCGCTGAAGTTGCTCCCGTGCAAACAATGATTTTAATGC
ACGGCTTTCCCGCTTCGGGCAAAACCACGTTTGTGAAGAGATTCCTCGAT
GCGAGGGGATACGCGTGGGTGAATCAGGACACGCTGCACACATTTACAAG
ATGCGTTCGCGCCACAAGAAATGAGCTGGCGGCAGGCAAGAGCGTGGTGA
TTGACAACACCAATGCGGATCGAAGCGCGCGACGCAAGTACATTGAGGTT
GCAAAGGCACACGACACAAACGTGAAGGTGATTGCTCTCAACATGGGCGC
CTCTCGCGCGCTGTCGGAGCATTTGAATATTGTGCGGGAGCGAGAGACAA
AGGGCGAGTGCGCACACATTCCAAAAGTGGCGTATCACGCGTTCCAGAAG
CGAAGACAGATTCCGCAACTGGACGAATCGATCGATGCGATCGGCGAGGT
GAAGTTCATTCCGTCGTTCTTGTCAGATCGTGACAAATACATGTTTACCA
GGCTCTCGTAA