Gcaud3386.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3386.t1
Unique Name	Gcaud3386.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	342

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_100_length_51433_cov_4.606891	contig	NODE_100_length_51433_cov_4.606891:15719..16744 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	36080.S2JQP4
PFAMs	LIDHydrolase
Max annot lvl	4751\|Fungi
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005811,GO:0008150,GO:0010876,GO:0019915,GO:0033036,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044464,GO:0051179,GO:0051235,GO:0065007,GO:0065008
Evalue	4.27e-20
EggNOG OGs	KOG3975@1\|root,KOG3975@2759\|Eukaryota,38IMC@33154\|Opisthokonta,3P0KT@4751\|Fungi,1GTXH@112252\|Fungi incertae sedis
Description	Lipid-droplet associated hydrolase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3386	Gcaud3386	Gracilaria caudata M_176_S67 male	gene	NODE_100_length_51433_cov_4.606891 15719..16744 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3386.t1.stop1	Gcaud3386.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_100_length_51433_cov_4.606891 15719..15721 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3386.t1.CDS1	Gcaud3386.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_100_length_51433_cov_4.606891 15719..16744 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3386.t1.exon1	Gcaud3386.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_100_length_51433_cov_4.606891 15719..16744 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3386.t1.start1	Gcaud3386.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_100_length_51433_cov_4.606891 16742..16744 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3386.t1	Gcaud3386.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_100_length_51433_cov_4.606891 15719..16744 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_100_length_51433_cov_4.606891:15719..16744-
coding sequence from alignment at NODE_100_length_51433_cov_4.606891:15719..16744-

mRNA sequence

>Gcaud3386.t1 ID=Gcaud3386.t1|Name=Gcaud3386.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=342bp
MGRTKLPPRRVIQKQQGRSTARIVLGAERGPHCEIFQSSAEVRAEVLRVL
PDVKAKPHTHLLLAPGNPGVIEYYRPFLRKLHARIPSDVRNHSSFHAVGL
PGHDLRHLNVQSTFAIDDHISFYQDYVRQVSEPDDKFIFIGHSYGSFLLL
RLMDKLDAHFLPNADLVMLMPCIWRMRHCAGPLLRVLGRDSFGLTTHATW
LATALLPPLLRNSLLELAQHDPSVIEVSRTIIDGQRKALYANVTTLARDE
MERITEVQSSRTEKSLLVWVDGDQWCPIEAKQRICEHFSERLEVEKLDNV
THAFVLKDCETDRVVRAVAPWVCTRILESLKKHTQPNGKIP*

spliced messenger RNA

>Gcaud3386.t1 ID=Gcaud3386.t1|Name=Gcaud3386.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1026bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:15719..16744- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCGCACAAAGCTCCCCCCTCGCCGAGTTATCCAGAAGCAACAAGG
CAGATCAACTGCTCGCATCGTGCTCGGCGCTGAGCGTGGCCCGCACTGCG
AAATATTCCAGTCGTCTGCTGAGGTGCGCGCAGAGGTTCTACGCGTGCTG
CCTGATGTCAAGGCCAAGCCGCACACCCACCTGCTGCTCGCGCCCGGTAA
TCCCGGCGTCATTGAGTATTACCGCCCATTTCTTCGGAAGTTGCACGCGC
GCATTCCGAGCGACGTGCGGAACCACTCTTCTTTCCACGCAGTGGGTTTG
CCAGGCCACGACTTGCGACACCTCAATGTCCAATCCACTTTTGCAATTGA
CGACCACATCTCTTTCTACCAAGACTATGTGCGTCAAGTCTCCGAGCCTG
ATGATAAATTCATATTCATTGGTCACTCCTATGGCTCTTTTTTGTTGCTT
CGTCTCATGGACAAGCTCGATGCCCACTTCCTTCCCAATGCCGATTTAGT
CATGCTAATGCCCTGCATATGGCGCATGCGCCACTGTGCCGGTCCATTGC
TGCGTGTTCTTGGTCGCGACAGTTTTGGACTCACAACACACGCTACCTGG
CTAGCTACAGCACTCCTTCCACCACTTCTTCGAAACAGTTTGCTGGAGCT
CGCGCAGCATGATCCAAGTGTCATAGAAGTCAGTCGCACTATTATTGACG
GCCAGCGAAAAGCGCTTTACGCCAACGTAACCACCCTCGCTCGCGACGAA
ATGGAACGAATCACTGAAGTCCAGTCATCACGCACTGAAAAGTCTCTCCT
AGTATGGGTGGATGGGGATCAATGGTGTCCGATCGAAGCGAAACAACGCA
TCTGTGAACACTTTTCAGAGCGCTTGGAGGTAGAAAAGTTGGATAACGTC
ACTCATGCATTTGTTTTGAAAGACTGCGAAACTGACCGCGTCGTTCGTGC
CGTAGCTCCGTGGGTTTGCACCAGAATTCTTGAATCGCTCAAGAAGCACA
CTCAACCGAACGGAAAAATCCCTTGA

protein sequence of Gcaud3386.t1

>Gcaud3386.t1 ID=Gcaud3386.t1|Name=Gcaud3386.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=342bp
MGRTKLPPRRVIQKQQGRSTARIVLGAERGPHCEIFQSSAEVRAEVLRVL
PDVKAKPHTHLLLAPGNPGVIEYYRPFLRKLHARIPSDVRNHSSFHAVGL
PGHDLRHLNVQSTFAIDDHISFYQDYVRQVSEPDDKFIFIGHSYGSFLLL
RLMDKLDAHFLPNADLVMLMPCIWRMRHCAGPLLRVLGRDSFGLTTHATW
LATALLPPLLRNSLLELAQHDPSVIEVSRTIIDGQRKALYANVTTLARDE
MERITEVQSSRTEKSLLVWVDGDQWCPIEAKQRICEHFSERLEVEKLDNV
THAFVLKDCETDRVVRAVAPWVCTRILESLKKHTQPNGKIP*

mRNA from alignment at NODE_100_length_51433_cov_4.606891:15719..16744-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3386.t1 ID=Gcaud3386.t1|Name=Gcaud3386.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1026bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:15719..16744- (Gracilaria caudata M_176_S67 male)
ATGGGCCGCACAAAGCTCCCCCCTCGCCGAGTTATCCAGAAGCAACAAGG
CAGATCAACTGCTCGCATCGTGCTCGGCGCTGAGCGTGGCCCGCACTGCG
AAATATTCCAGTCGTCTGCTGAGGTGCGCGCAGAGGTTCTACGCGTGCTG
CCTGATGTCAAGGCCAAGCCGCACACCCACCTGCTGCTCGCGCCCGGTAA
TCCCGGCGTCATTGAGTATTACCGCCCATTTCTTCGGAAGTTGCACGCGC
GCATTCCGAGCGACGTGCGGAACCACTCTTCTTTCCACGCAGTGGGTTTG
CCAGGCCACGACTTGCGACACCTCAATGTCCAATCCACTTTTGCAATTGA
CGACCACATCTCTTTCTACCAAGACTATGTGCGTCAAGTCTCCGAGCCTG
ATGATAAATTCATATTCATTGGTCACTCCTATGGCTCTTTTTTGTTGCTT
CGTCTCATGGACAAGCTCGATGCCCACTTCCTTCCCAATGCCGATTTAGT
CATGCTAATGCCCTGCATATGGCGCATGCGCCACTGTGCCGGTCCATTGC
TGCGTGTTCTTGGTCGCGACAGTTTTGGACTCACAACACACGCTACCTGG
CTAGCTACAGCACTCCTTCCACCACTTCTTCGAAACAGTTTGCTGGAGCT
CGCGCAGCATGATCCAAGTGTCATAGAAGTCAGTCGCACTATTATTGACG
GCCAGCGAAAAGCGCTTTACGCCAACGTAACCACCCTCGCTCGCGACGAA
ATGGAACGAATCACTGAAGTCCAGTCATCACGCACTGAAAAGTCTCTCCT
AGTATGGGTGGATGGGGATCAATGGTGTCCGATCGAAGCGAAACAACGCA
TCTGTGAACACTTTTCAGAGCGCTTGGAGGTAGAAAAGTTGGATAACGTC
ACTCATGCATTTGTTTTGAAAGACTGCGAAACTGACCGCGTCGTTCGTGC
CGTAGCTCCGTGGGTTTGCACCAGAATTCTTGAATCGCTCAAGAAGCACA
CTCAACCGAACGGAAAAATCCCTTGA

Coding sequence (CDS) from alignment at NODE_100_length_51433_cov_4.606891:15719..16744-

>Gcaud3386.t1 ID=Gcaud3386.t1|Name=Gcaud3386.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1026bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:15719..16744- (Gracilaria caudata M_176_S67 male)
ATGGGCCGCACAAAGCTCCCCCCTCGCCGAGTTATCCAGAAGCAACAAGG
CAGATCAACTGCTCGCATCGTGCTCGGCGCTGAGCGTGGCCCGCACTGCG
AAATATTCCAGTCGTCTGCTGAGGTGCGCGCAGAGGTTCTACGCGTGCTG
CCTGATGTCAAGGCCAAGCCGCACACCCACCTGCTGCTCGCGCCCGGTAA
TCCCGGCGTCATTGAGTATTACCGCCCATTTCTTCGGAAGTTGCACGCGC
GCATTCCGAGCGACGTGCGGAACCACTCTTCTTTCCACGCAGTGGGTTTG
CCAGGCCACGACTTGCGACACCTCAATGTCCAATCCACTTTTGCAATTGA
CGACCACATCTCTTTCTACCAAGACTATGTGCGTCAAGTCTCCGAGCCTG
ATGATAAATTCATATTCATTGGTCACTCCTATGGCTCTTTTTTGTTGCTT
CGTCTCATGGACAAGCTCGATGCCCACTTCCTTCCCAATGCCGATTTAGT
CATGCTAATGCCCTGCATATGGCGCATGCGCCACTGTGCCGGTCCATTGC
TGCGTGTTCTTGGTCGCGACAGTTTTGGACTCACAACACACGCTACCTGG
CTAGCTACAGCACTCCTTCCACCACTTCTTCGAAACAGTTTGCTGGAGCT
CGCGCAGCATGATCCAAGTGTCATAGAAGTCAGTCGCACTATTATTGACG
GCCAGCGAAAAGCGCTTTACGCCAACGTAACCACCCTCGCTCGCGACGAA
ATGGAACGAATCACTGAAGTCCAGTCATCACGCACTGAAAAGTCTCTCCT
AGTATGGGTGGATGGGGATCAATGGTGTCCGATCGAAGCGAAACAACGCA
TCTGTGAACACTTTTCAGAGCGCTTGGAGGTAGAAAAGTTGGATAACGTC
ACTCATGCATTTGTTTTGAAAGACTGCGAAACTGACCGCGTCGTTCGTGC
CGTAGCTCCGTGGGTTTGCACCAGAATTCTTGAATCGCTCAAGAAGCACA
CTCAACCGAACGGAAAAATCCCTTGA