Gcaud2992.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2992.t1
Unique Name	Gcaud2992.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	625

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_222_length_35706_cov_4.342356	contig	NODE_222_length_35706_cov_4.342356:2748..4622 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2992	Gcaud2992	Gracilaria caudata M_176_S67 male	gene	NODE_222_length_35706_cov_4.342356 2748..4622 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2992.t1.stop1	Gcaud2992.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_222_length_35706_cov_4.342356 2748..2750 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2992.t1.CDS1	Gcaud2992.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_222_length_35706_cov_4.342356 2748..4622 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2992.t1.exon1	Gcaud2992.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_222_length_35706_cov_4.342356 2748..4622 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2992.t1.start1	Gcaud2992.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_222_length_35706_cov_4.342356 4620..4622 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2992.t1	Gcaud2992.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_222_length_35706_cov_4.342356 2748..4622 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_222_length_35706_cov_4.342356:2748..4622-
coding sequence from alignment at NODE_222_length_35706_cov_4.342356:2748..4622-

mRNA sequence

>Gcaud2992.t1 ID=Gcaud2992.t1|Name=Gcaud2992.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=625bp
MNKSQPSEPSLFLKRSRRVQKRRRVNSQFPVPGSKDSPSATGSAAFSSNA
SSLHIDATSNDDPLPQQDPARARPYSVRIKPRVQTKLKQAPLVPGYEPDS
DPKHEKQTSYTEDQLKQLKQKLRIAPHSRPPAPVTSREPPSNISKSSSGK
QHDKDQSTPRNSNKVDHSNRSSEKPRFSLSQPSRPTVATKVPGTAAAAPF
SAEWNARIFDDDDMEIEPLSNFSRTEGNDSDSEGADVEWEAQLMRRATQK
TTEQDQYMLKREMNIIRDAETEGRQTGAFRRLKADIGKRIDELAEQQAYV
EQKIHRLEQVVKQDTSIKGNAYTSVEYLQGKVGLYEDLVQRVSTVSRSVA
ASDAVFERWENFVDSEMAERIQKINVRLKGGVDRFGRERKAQVLDIEEVR
DDFRDWHGRLVEKELNEVIELRKQLGFKEIMRLVKNWCERFPEEYNSASA
DAGLGKLLGRLGLLENDIGFIHKLELKVGMIEAGVVAFGVERFAAWIKAR
WEPRAPESCEFVGDLMSAVNVAQDDVKGVVRSALQSRLESEIEALEASSD
QGIREVVRGLVIVAKKGQFDPGFITAMQACEKVCGLAGLEEEFEWLVQCS
FVRDETGKIREWRDTQLEHHDSIG*

spliced messenger RNA

>Gcaud2992.t1 ID=Gcaud2992.t1|Name=Gcaud2992.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1875bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:2748..4622- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAAGAGTCAACCTTCAGAACCTTCGCTCTTTCTAAAGCGCAGCCG
CAGAGTTCAGAAAAGGCGTCGGGTGAATTCACAGTTTCCTGTCCCGGGCT
CTAAAGATTCGCCTAGTGCAACTGGCTCAGCTGCTTTTTCTTCCAATGCT
TCGTCTTTGCATATTGATGCTACATCTAACGATGATCCGCTTCCGCAACA
GGACCCCGCTCGTGCTCGCCCTTATTCAGTTCGCATAAAACCTCGAGTGC
AGACGAAACTTAAACAAGCACCGCTTGTTCCCGGTTATGAACCAGATTCG
GATCCAAAACATGAGAAGCAAACTTCCTATACAGAGGACCAACTGAAACA
ACTCAAGCAAAAACTCCGTATTGCTCCCCATTCCCGTCCACCAGCACCTG
TTACTAGTCGCGAACCGCCTTCAAATATTTCTAAGTCGTCTTCTGGGAAG
CAGCACGACAAAGATCAGAGTACCCCACGTAATAGTAATAAGGTTGACCA
TAGCAATCGGTCAAGTGAGAAGCCCCGCTTCTCTTTGTCTCAACCCTCGC
GACCGACAGTTGCGACGAAAGTACCAGGTACCGCTGCGGCAGCGCCATTT
TCCGCCGAATGGAACGCACGAATATTCGACGATGATGATATGGAGATTGA
ACCTTTGTCCAACTTTTCTCGCACAGAGGGTAACGATAGCGACAGTGAAG
GTGCTGACGTCGAATGGGAGGCGCAACTCATGCGACGTGCTACACAGAAA
ACAACTGAACAGGATCAATATATGCTTAAACGCGAGATGAATATCATTCG
AGATGCTGAGACGGAAGGTAGGCAAACAGGAGCTTTCAGGAGGTTAAAGG
CTGATATTGGGAAACGTATTGATGAACTCGCGGAACAGCAAGCTTACGTT
GAGCAGAAAATTCATCGACTGGAACAAGTAGTCAAACAAGACACGAGCAT
AAAAGGAAACGCGTATACCTCCGTTGAATACCTACAAGGAAAAGTTGGAC
TTTATGAGGATCTTGTACAAAGAGTTTCCACCGTCTCAAGAAGTGTCGCG
GCTTCTGATGCGGTTTTTGAAAGATGGGAGAACTTTGTTGATAGTGAGAT
GGCAGAACGGATACAGAAAATTAATGTGCGGCTTAAAGGTGGCGTTGACA
GATTTGGGCGCGAGAGAAAAGCGCAAGTATTGGACATCGAAGAGGTGCGC
GATGATTTCCGGGATTGGCATGGTCGACTGGTCGAAAAGGAGCTGAATGA
AGTGATCGAACTACGAAAGCAGCTGGGTTTCAAAGAGATCATGAGATTGG
TCAAAAACTGGTGTGAAAGATTTCCTGAAGAGTACAACTCAGCTTCCGCA
GATGCTGGGTTAGGCAAGCTATTAGGAAGATTGGGGTTGCTGGAGAATGA
TATTGGATTTATCCACAAACTTGAACTGAAAGTGGGGATGATAGAGGCGG
GAGTGGTGGCGTTTGGAGTGGAACGTTTTGCTGCATGGATCAAAGCAAGA
TGGGAACCTAGAGCGCCTGAAAGTTGTGAGTTCGTCGGCGACTTAATGAG
CGCTGTGAATGTAGCTCAGGATGATGTAAAGGGAGTTGTCCGAAGCGCGT
TGCAAAGCCGGCTTGAGTCGGAAATCGAAGCTCTTGAAGCCTCAAGCGAT
CAAGGAATTAGGGAAGTGGTGCGTGGCTTAGTGATTGTCGCGAAAAAAGG
GCAGTTTGACCCGGGATTCATTACGGCGATGCAGGCCTGTGAAAAAGTAT
GCGGGTTGGCAGGGCTTGAAGAGGAGTTCGAATGGCTGGTACAGTGTTCT
TTTGTGCGGGATGAAACTGGAAAGATACGTGAATGGCGCGATACGCAACT
AGAACACCACGATAGCATTGGGTGA

protein sequence of Gcaud2992.t1

>Gcaud2992.t1 ID=Gcaud2992.t1|Name=Gcaud2992.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=625bp
MNKSQPSEPSLFLKRSRRVQKRRRVNSQFPVPGSKDSPSATGSAAFSSNA
SSLHIDATSNDDPLPQQDPARARPYSVRIKPRVQTKLKQAPLVPGYEPDS
DPKHEKQTSYTEDQLKQLKQKLRIAPHSRPPAPVTSREPPSNISKSSSGK
QHDKDQSTPRNSNKVDHSNRSSEKPRFSLSQPSRPTVATKVPGTAAAAPF
SAEWNARIFDDDDMEIEPLSNFSRTEGNDSDSEGADVEWEAQLMRRATQK
TTEQDQYMLKREMNIIRDAETEGRQTGAFRRLKADIGKRIDELAEQQAYV
EQKIHRLEQVVKQDTSIKGNAYTSVEYLQGKVGLYEDLVQRVSTVSRSVA
ASDAVFERWENFVDSEMAERIQKINVRLKGGVDRFGRERKAQVLDIEEVR
DDFRDWHGRLVEKELNEVIELRKQLGFKEIMRLVKNWCERFPEEYNSASA
DAGLGKLLGRLGLLENDIGFIHKLELKVGMIEAGVVAFGVERFAAWIKAR
WEPRAPESCEFVGDLMSAVNVAQDDVKGVVRSALQSRLESEIEALEASSD
QGIREVVRGLVIVAKKGQFDPGFITAMQACEKVCGLAGLEEEFEWLVQCS
FVRDETGKIREWRDTQLEHHDSIG*

mRNA from alignment at NODE_222_length_35706_cov_4.342356:2748..4622-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2992.t1 ID=Gcaud2992.t1|Name=Gcaud2992.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1875bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:2748..4622- (Gracilaria caudata M_176_S67 male)
ATGAACAAGAGTCAACCTTCAGAACCTTCGCTCTTTCTAAAGCGCAGCCG
CAGAGTTCAGAAAAGGCGTCGGGTGAATTCACAGTTTCCTGTCCCGGGCT
CTAAAGATTCGCCTAGTGCAACTGGCTCAGCTGCTTTTTCTTCCAATGCT
TCGTCTTTGCATATTGATGCTACATCTAACGATGATCCGCTTCCGCAACA
GGACCCCGCTCGTGCTCGCCCTTATTCAGTTCGCATAAAACCTCGAGTGC
AGACGAAACTTAAACAAGCACCGCTTGTTCCCGGTTATGAACCAGATTCG
GATCCAAAACATGAGAAGCAAACTTCCTATACAGAGGACCAACTGAAACA
ACTCAAGCAAAAACTCCGTATTGCTCCCCATTCCCGTCCACCAGCACCTG
TTACTAGTCGCGAACCGCCTTCAAATATTTCTAAGTCGTCTTCTGGGAAG
CAGCACGACAAAGATCAGAGTACCCCACGTAATAGTAATAAGGTTGACCA
TAGCAATCGGTCAAGTGAGAAGCCCCGCTTCTCTTTGTCTCAACCCTCGC
GACCGACAGTTGCGACGAAAGTACCAGGTACCGCTGCGGCAGCGCCATTT
TCCGCCGAATGGAACGCACGAATATTCGACGATGATGATATGGAGATTGA
ACCTTTGTCCAACTTTTCTCGCACAGAGGGTAACGATAGCGACAGTGAAG
GTGCTGACGTCGAATGGGAGGCGCAACTCATGCGACGTGCTACACAGAAA
ACAACTGAACAGGATCAATATATGCTTAAACGCGAGATGAATATCATTCG
AGATGCTGAGACGGAAGGTAGGCAAACAGGAGCTTTCAGGAGGTTAAAGG
CTGATATTGGGAAACGTATTGATGAACTCGCGGAACAGCAAGCTTACGTT
GAGCAGAAAATTCATCGACTGGAACAAGTAGTCAAACAAGACACGAGCAT
AAAAGGAAACGCGTATACCTCCGTTGAATACCTACAAGGAAAAGTTGGAC
TTTATGAGGATCTTGTACAAAGAGTTTCCACCGTCTCAAGAAGTGTCGCG
GCTTCTGATGCGGTTTTTGAAAGATGGGAGAACTTTGTTGATAGTGAGAT
GGCAGAACGGATACAGAAAATTAATGTGCGGCTTAAAGGTGGCGTTGACA
GATTTGGGCGCGAGAGAAAAGCGCAAGTATTGGACATCGAAGAGGTGCGC
GATGATTTCCGGGATTGGCATGGTCGACTGGTCGAAAAGGAGCTGAATGA
AGTGATCGAACTACGAAAGCAGCTGGGTTTCAAAGAGATCATGAGATTGG
TCAAAAACTGGTGTGAAAGATTTCCTGAAGAGTACAACTCAGCTTCCGCA
GATGCTGGGTTAGGCAAGCTATTAGGAAGATTGGGGTTGCTGGAGAATGA
TATTGGATTTATCCACAAACTTGAACTGAAAGTGGGGATGATAGAGGCGG
GAGTGGTGGCGTTTGGAGTGGAACGTTTTGCTGCATGGATCAAAGCAAGA
TGGGAACCTAGAGCGCCTGAAAGTTGTGAGTTCGTCGGCGACTTAATGAG
CGCTGTGAATGTAGCTCAGGATGATGTAAAGGGAGTTGTCCGAAGCGCGT
TGCAAAGCCGGCTTGAGTCGGAAATCGAAGCTCTTGAAGCCTCAAGCGAT
CAAGGAATTAGGGAAGTGGTGCGTGGCTTAGTGATTGTCGCGAAAAAAGG
GCAGTTTGACCCGGGATTCATTACGGCGATGCAGGCCTGTGAAAAAGTAT
GCGGGTTGGCAGGGCTTGAAGAGGAGTTCGAATGGCTGGTACAGTGTTCT
TTTGTGCGGGATGAAACTGGAAAGATACGTGAATGGCGCGATACGCAACT
AGAACACCACGATAGCATTGGGTGA

Coding sequence (CDS) from alignment at NODE_222_length_35706_cov_4.342356:2748..4622-

>Gcaud2992.t1 ID=Gcaud2992.t1|Name=Gcaud2992.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1875bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:2748..4622- (Gracilaria caudata M_176_S67 male)
ATGAACAAGAGTCAACCTTCAGAACCTTCGCTCTTTCTAAAGCGCAGCCG
CAGAGTTCAGAAAAGGCGTCGGGTGAATTCACAGTTTCCTGTCCCGGGCT
CTAAAGATTCGCCTAGTGCAACTGGCTCAGCTGCTTTTTCTTCCAATGCT
TCGTCTTTGCATATTGATGCTACATCTAACGATGATCCGCTTCCGCAACA
GGACCCCGCTCGTGCTCGCCCTTATTCAGTTCGCATAAAACCTCGAGTGC
AGACGAAACTTAAACAAGCACCGCTTGTTCCCGGTTATGAACCAGATTCG
GATCCAAAACATGAGAAGCAAACTTCCTATACAGAGGACCAACTGAAACA
ACTCAAGCAAAAACTCCGTATTGCTCCCCATTCCCGTCCACCAGCACCTG
TTACTAGTCGCGAACCGCCTTCAAATATTTCTAAGTCGTCTTCTGGGAAG
CAGCACGACAAAGATCAGAGTACCCCACGTAATAGTAATAAGGTTGACCA
TAGCAATCGGTCAAGTGAGAAGCCCCGCTTCTCTTTGTCTCAACCCTCGC
GACCGACAGTTGCGACGAAAGTACCAGGTACCGCTGCGGCAGCGCCATTT
TCCGCCGAATGGAACGCACGAATATTCGACGATGATGATATGGAGATTGA
ACCTTTGTCCAACTTTTCTCGCACAGAGGGTAACGATAGCGACAGTGAAG
GTGCTGACGTCGAATGGGAGGCGCAACTCATGCGACGTGCTACACAGAAA
ACAACTGAACAGGATCAATATATGCTTAAACGCGAGATGAATATCATTCG
AGATGCTGAGACGGAAGGTAGGCAAACAGGAGCTTTCAGGAGGTTAAAGG
CTGATATTGGGAAACGTATTGATGAACTCGCGGAACAGCAAGCTTACGTT
GAGCAGAAAATTCATCGACTGGAACAAGTAGTCAAACAAGACACGAGCAT
AAAAGGAAACGCGTATACCTCCGTTGAATACCTACAAGGAAAAGTTGGAC
TTTATGAGGATCTTGTACAAAGAGTTTCCACCGTCTCAAGAAGTGTCGCG
GCTTCTGATGCGGTTTTTGAAAGATGGGAGAACTTTGTTGATAGTGAGAT
GGCAGAACGGATACAGAAAATTAATGTGCGGCTTAAAGGTGGCGTTGACA
GATTTGGGCGCGAGAGAAAAGCGCAAGTATTGGACATCGAAGAGGTGCGC
GATGATTTCCGGGATTGGCATGGTCGACTGGTCGAAAAGGAGCTGAATGA
AGTGATCGAACTACGAAAGCAGCTGGGTTTCAAAGAGATCATGAGATTGG
TCAAAAACTGGTGTGAAAGATTTCCTGAAGAGTACAACTCAGCTTCCGCA
GATGCTGGGTTAGGCAAGCTATTAGGAAGATTGGGGTTGCTGGAGAATGA
TATTGGATTTATCCACAAACTTGAACTGAAAGTGGGGATGATAGAGGCGG
GAGTGGTGGCGTTTGGAGTGGAACGTTTTGCTGCATGGATCAAAGCAAGA
TGGGAACCTAGAGCGCCTGAAAGTTGTGAGTTCGTCGGCGACTTAATGAG
CGCTGTGAATGTAGCTCAGGATGATGTAAAGGGAGTTGTCCGAAGCGCGT
TGCAAAGCCGGCTTGAGTCGGAAATCGAAGCTCTTGAAGCCTCAAGCGAT
CAAGGAATTAGGGAAGTGGTGCGTGGCTTAGTGATTGTCGCGAAAAAAGG
GCAGTTTGACCCGGGATTCATTACGGCGATGCAGGCCTGTGAAAAAGTAT
GCGGGTTGGCAGGGCTTGAAGAGGAGTTCGAATGGCTGGTACAGTGTTCT
TTTGTGCGGGATGAAACTGGAAAGATACGTGAATGGCGCGATACGCAACT
AGAACACCACGATAGCATTGGGTGA