Gcaud3002.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3002.t1
Unique Name	Gcaud3002.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	731

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_222_length_35706_cov_4.342356	contig	NODE_222_length_35706_cov_4.342356:33094..35385 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704651.1
PFAMs	KH_1,WW
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K13210
Evalue	4.46e-41
EggNOG OGs	KOG1676@1\|root,KOG1676@2759\|Eukaryota
Description	negative regulation of low-density lipoprotein particle clearance
COG category	S
BRITE	ko00000,ko03019,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3002	Gcaud3002	Gracilaria caudata M_176_S67 male	gene	NODE_222_length_35706_cov_4.342356 33094..35385 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3002.t1	Gcaud3002.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_222_length_35706_cov_4.342356 33094..35385 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3002.t1.stop1	Gcaud3002.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_222_length_35706_cov_4.342356 33094..33096 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3002.t1.CDS1	Gcaud3002.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_222_length_35706_cov_4.342356 33094..33757 -
Gcaud3002.t1.CDS2	Gcaud3002.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_222_length_35706_cov_4.342356 33857..35385 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3002.t1.exon1	Gcaud3002.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_222_length_35706_cov_4.342356 33094..33757 -
Gcaud3002.t1.exon2	Gcaud3002.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_222_length_35706_cov_4.342356 33857..35385 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3002.t1.intron1	Gcaud3002.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_222_length_35706_cov_4.342356 33758..33856 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3002.t1.start1	Gcaud3002.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_222_length_35706_cov_4.342356 35383..35385 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_222_length_35706_cov_4.342356:33094..35385-
coding sequence from alignment at NODE_222_length_35706_cov_4.342356:33094..35385-

mRNA sequence

>Gcaud3002.t1 ID=Gcaud3002.t1|Name=Gcaud3002.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=731bp
MDRDAASPPPSKPSHLPLDDRPVAPPSHLQSPPATANGSSVHAPVAHNSL
HAASSDAPVASSEHLLHSPERARVSSAALQANLHAASHSPVLPSHRSPQR
SDARAAQAAHTVVESASQQAAAFNMVSSFSDLSLNAGMEYPPALQIMPIP
PQQIIPISPQHAAQVAQQNRRHHPHAHAHHHPHQHSIMHNHNQQHTFQLW
VPQERVGAVIGGHGAVIRSLQEKSGAAIQVHNDTVRDDRKLFTIFGTRTQ
YETAAQLVNEIVERPRPSSSSSHYPSHHHNASLDARSHYSTSIQSSNHMS
TTKSSTSDMCKTVYVPTSCVGLVIGRNGETIKSLQDRSGAEIKVTPDRKA
TPGSDDRSILISGTEEAIATAHQLVSEIVNDARSRRPSQHGGLSSGSTYK
GQPVFMETLAVPNEKVGLIIGKKGITIRELQMKSGASIQVAKDDNSVRSD
GSRPITITGSRAQVEDAKAMIASKINVNMLTTIHPPTTFQSSLVGTHGMP
LAPGQPPGLHRHPMAYMPYFGYNNVAPLPQHRHFAQQASQIPFNPALHQS
QQQQQPPPPPPPPPPSSQQQVLHDQSPPPPPPSQSQAEQDSQLASAPMVA
QAQQQLDGLTPPVNMVAGEANPGGFVMFPSHPFHPMASQIQPQHIYPGMA
NTRVFPREAQAHAQAQMFAHAQAQAQAQAQMHTQPFAQVQPLGSVPSNEN
AEVAAHLDQQSNETVQNSAPIPSEIEQPDR*

spliced messenger RNA

>Gcaud3002.t1 ID=Gcaud3002.t1|Name=Gcaud3002.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2193bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:33094..35385- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCGCGACGCCGCCTCTCCGCCTCCCTCCAAGCCGTCGCATCTGCC
GCTCGACGACCGTCCCGTCGCACCGCCCTCGCATCTCCAATCGCCACCCG
CCACAGCCAACGGTTCCTCTGTCCATGCGCCCGTCGCACACAACTCGTTA
CACGCCGCGTCCTCCGACGCACCTGTCGCCTCTTCCGAGCACCTACTTCA
CTCGCCCGAACGTGCGCGCGTGTCGTCCGCCGCGCTGCAAGCCAATCTTC
ACGCCGCGTCTCACTCGCCCGTGTTGCCGTCGCATCGCTCGCCACAGCGT
TCTGACGCGCGCGCTGCACAAGCGGCGCACACTGTTGTTGAGTCTGCGTC
GCAGCAGGCTGCAGCGTTCAACATGGTGTCCTCCTTCAGTGACCTTTCTC
TCAACGCAGGTATGGAGTATCCGCCTGCGCTGCAAATCATGCCTATTCCG
CCTCAGCAGATCATTCCGATCAGTCCGCAGCATGCTGCTCAAGTAGCTCA
ACAGAACCGTCGACATCACCCTCATGCCCACGCTCATCATCACCCTCACC
AACATTCTATCATGCACAATCACAACCAGCAACACACTTTCCAATTGTGG
GTGCCGCAGGAGCGTGTCGGCGCGGTGATCGGCGGTCATGGTGCGGTTAT
TCGCTCTTTGCAGGAAAAGTCCGGCGCCGCTATTCAAGTTCACAACGATA
CTGTTCGTGACGATCGCAAGCTTTTCACTATTTTTGGCACCCGAACGCAG
TACGAGACTGCCGCTCAGCTTGTCAATGAAATTGTGGAACGACCTCGTCC
GTCTTCGTCCTCGTCGCATTACCCTTCTCATCATCACAACGCTTCGCTGG
ACGCGCGTTCTCATTATTCGACTTCAATACAGTCTAGCAATCACATGTCA
ACAACAAAGTCTTCTACTTCTGACATGTGTAAAACTGTCTACGTTCCCAC
TTCCTGTGTCGGTCTTGTAATTGGGCGCAATGGGGAAACTATAAAGAGCT
TGCAAGATAGATCGGGCGCCGAGATCAAAGTCACCCCGGACAGAAAGGCC
ACTCCGGGATCGGATGACCGTTCCATTCTCATCTCTGGCACGGAGGAAGC
CATTGCTACCGCCCATCAGCTTGTGTCGGAGATTGTGAACGACGCTCGCT
CAAGACGTCCCTCGCAGCACGGAGGCTTGTCGTCGGGCTCTACGTACAAG
GGGCAGCCGGTGTTCATGGAGACGCTGGCCGTTCCGAACGAGAAGGTGGG
TCTTATCATAGGTAAGAAGGGAATCACCATTCGAGAGTTGCAAATGAAGT
CGGGCGCCAGCATCCAGGTTGCCAAGGACGACAACAGCGTTCGTAGCGAC
GGCAGTCGCCCCATCACCATCACCGGTTCCAGGGCTCAAGTGGAAGATGC
CAAGGCCATGATTGCTAGCAAGATCAACGTCAACATGCTTACTACCATCC
ATCCCCCTACTACTTTTCAATCCTCACTGGTTGGCACGCATGGCATGCCG
CTAGCGCCGGGCCAACCGCCTGGTCTGCATCGCCATCCAATGGCTTACAT
GCCATATTTTGGATATAACAACGTCGCGCCATTGCCACAACATCGCCATT
TTGCGCAGCAGGCCAGTCAGATTCCTTTCAACCCCGCGCTACACCAATCT
CAGCAACAACAACAACCACCACCTCCTCCCCCTCCTCCTCCTCCGTCTTC
ACAGCAACAAGTTCTTCATGACCAGAGCCCCCCTCCTCCTCCACCAAGCC
AGTCACAAGCGGAACAAGATTCACAATTAGCTTCTGCTCCCATGGTTGCC
CAAGCGCAGCAACAATTGGATGGCTTAACTCCTCCAGTAAACATGGTGGC
AGGTGAAGCAAATCCGGGCGGCTTTGTCATGTTCCCTTCACATCCGTTCC
ACCCGATGGCCTCTCAGATTCAGCCTCAGCACATCTATCCGGGAATGGCC
AACACCAGAGTGTTCCCTCGTGAAGCACAAGCACATGCGCAAGCGCAGAT
GTTTGCACATGCGCAGGCACAGGCACAAGCGCAGGCTCAGATGCACACAC
AGCCGTTTGCCCAAGTTCAGCCTCTGGGCTCCGTGCCATCGAATGAAAAT
GCGGAAGTGGCTGCTCACCTTGACCAACAATCCAACGAAACAGTCCAAAA
TTCAGCCCCGATACCGAGTGAGATAGAGCAACCAGACCGATAG

protein sequence of Gcaud3002.t1

>Gcaud3002.t1 ID=Gcaud3002.t1|Name=Gcaud3002.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=731bp
MDRDAASPPPSKPSHLPLDDRPVAPPSHLQSPPATANGSSVHAPVAHNSL
HAASSDAPVASSEHLLHSPERARVSSAALQANLHAASHSPVLPSHRSPQR
SDARAAQAAHTVVESASQQAAAFNMVSSFSDLSLNAGMEYPPALQIMPIP
PQQIIPISPQHAAQVAQQNRRHHPHAHAHHHPHQHSIMHNHNQQHTFQLW
VPQERVGAVIGGHGAVIRSLQEKSGAAIQVHNDTVRDDRKLFTIFGTRTQ
YETAAQLVNEIVERPRPSSSSSHYPSHHHNASLDARSHYSTSIQSSNHMS
TTKSSTSDMCKTVYVPTSCVGLVIGRNGETIKSLQDRSGAEIKVTPDRKA
TPGSDDRSILISGTEEAIATAHQLVSEIVNDARSRRPSQHGGLSSGSTYK
GQPVFMETLAVPNEKVGLIIGKKGITIRELQMKSGASIQVAKDDNSVRSD
GSRPITITGSRAQVEDAKAMIASKINVNMLTTIHPPTTFQSSLVGTHGMP
LAPGQPPGLHRHPMAYMPYFGYNNVAPLPQHRHFAQQASQIPFNPALHQS
QQQQQPPPPPPPPPPSSQQQVLHDQSPPPPPPSQSQAEQDSQLASAPMVA
QAQQQLDGLTPPVNMVAGEANPGGFVMFPSHPFHPMASQIQPQHIYPGMA
NTRVFPREAQAHAQAQMFAHAQAQAQAQAQMHTQPFAQVQPLGSVPSNEN
AEVAAHLDQQSNETVQNSAPIPSEIEQPDR*

mRNA from alignment at NODE_222_length_35706_cov_4.342356:33094..35385-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3002.t1 ID=Gcaud3002.t1|Name=Gcaud3002.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2292bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:33094..35385- (Gracilaria caudata M_176_S67 male)
ATGGATCGCGACGCCGCCTCTCCGCCTCCCTCCAAGCCGTCGCATCTGCC
GCTCGACGACCGTCCCGTCGCACCGCCCTCGCATCTCCAATCGCCACCCG
CCACAGCCAACGGTTCCTCTGTCCATGCGCCCGTCGCACACAACTCGTTA
CACGCCGCGTCCTCCGACGCACCTGTCGCCTCTTCCGAGCACCTACTTCA
CTCGCCCGAACGTGCGCGCGTGTCGTCCGCCGCGCTGCAAGCCAATCTTC
ACGCCGCGTCTCACTCGCCCGTGTTGCCGTCGCATCGCTCGCCACAGCGT
TCTGACGCGCGCGCTGCACAAGCGGCGCACACTGTTGTTGAGTCTGCGTC
GCAGCAGGCTGCAGCGTTCAACATGGTGTCCTCCTTCAGTGACCTTTCTC
TCAACGCAGGTATGGAGTATCCGCCTGCGCTGCAAATCATGCCTATTCCG
CCTCAGCAGATCATTCCGATCAGTCCGCAGCATGCTGCTCAAGTAGCTCA
ACAGAACCGTCGACATCACCCTCATGCCCACGCTCATCATCACCCTCACC
AACATTCTATCATGCACAATCACAACCAGCAACACACTTTCCAATTGTGG
GTGCCGCAGGAGCGTGTCGGCGCGGTGATCGGCGGTCATGGTGCGGTTAT
TCGCTCTTTGCAGGAAAAGTCCGGCGCCGCTATTCAAGTTCACAACGATA
CTGTTCGTGACGATCGCAAGCTTTTCACTATTTTTGGCACCCGAACGCAG
TACGAGACTGCCGCTCAGCTTGTCAATGAAATTGTGGAACGACCTCGTCC
GTCTTCGTCCTCGTCGCATTACCCTTCTCATCATCACAACGCTTCGCTGG
ACGCGCGTTCTCATTATTCGACTTCAATACAGTCTAGCAATCACATGTCA
ACAACAAAGTCTTCTACTTCTGACATGTGTAAAACTGTCTACGTTCCCAC
TTCCTGTGTCGGTCTTGTAATTGGGCGCAATGGGGAAACTATAAAGAGCT
TGCAAGATAGATCGGGCGCCGAGATCAAAGTCACCCCGGACAGAAAGGCC
ACTCCGGGATCGGATGACCGTTCCATTCTCATCTCTGGCACGGAGGAAGC
CATTGCTACCGCCCATCAGCTTGTGTCGGAGATTGTGAACGACGCTCGCT
CAAGACGTCCCTCGCAGCACGGAGGCTTGTCGTCGGGCTCTACGTACAAG
GGGCAGCCGGTGTTCATGGAGACGCTGGCCGTTCCGAACGAGAAGGTGGG
TCTTATCATAGGTAAGAAGGGAATCACCATTCGAGAGTTGCAAATGAAGT
CGGGCGCCAGCATCCAGGTTGCCAAGGACGACAACAGCGTTCGTAGCGAC
GGCAGTCGCCCCATCACCATCACCGGTTCCAGGGCTCAAGTGGAAGATGC
CAAGGCCATGATTGCTAGCAAGATCAACGTCAACATGCTTACTACCATCC
ATCCCCCTACTACTTTTCAATCCTCACTGGTTGGCACGCATGGCATGCCG
CTAGCGCCGGGCCAACCGCCTGGTCTGCAGTACGTCATGCCAAACGTCTA
CGAAGCGGAGTATTCCAATGGCCAAATGCATACGTTTCCCCAAGTCGTCG
ACCTTACTGACCCCAATAACTCCCATAGTCGCCATCCAATGGCTTACATG
CCATATTTTGGATATAACAACGTCGCGCCATTGCCACAACATCGCCATTT
TGCGCAGCAGGCCAGTCAGATTCCTTTCAACCCCGCGCTACACCAATCTC
AGCAACAACAACAACCACCACCTCCTCCCCCTCCTCCTCCTCCGTCTTCA
CAGCAACAAGTTCTTCATGACCAGAGCCCCCCTCCTCCTCCACCAAGCCA
GTCACAAGCGGAACAAGATTCACAATTAGCTTCTGCTCCCATGGTTGCCC
AAGCGCAGCAACAATTGGATGGCTTAACTCCTCCAGTAAACATGGTGGCA
GGTGAAGCAAATCCGGGCGGCTTTGTCATGTTCCCTTCACATCCGTTCCA
CCCGATGGCCTCTCAGATTCAGCCTCAGCACATCTATCCGGGAATGGCCA
ACACCAGAGTGTTCCCTCGTGAAGCACAAGCACATGCGCAAGCGCAGATG
TTTGCACATGCGCAGGCACAGGCACAAGCGCAGGCTCAGATGCACACACA
GCCGTTTGCCCAAGTTCAGCCTCTGGGCTCCGTGCCATCGAATGAAAATG
CGGAAGTGGCTGCTCACCTTGACCAACAATCCAACGAAACAGTCCAAAAT
TCAGCCCCGATACCGAGTGAGATAGAGCAACCAGACCGATAG

Coding sequence (CDS) from alignment at NODE_222_length_35706_cov_4.342356:33094..35385-

>Gcaud3002.t1 ID=Gcaud3002.t1|Name=Gcaud3002.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2193bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:33094..35385- (Gracilaria caudata M_176_S67 male)
ATGGATCGCGACGCCGCCTCTCCGCCTCCCTCCAAGCCGTCGCATCTGCC
GCTCGACGACCGTCCCGTCGCACCGCCCTCGCATCTCCAATCGCCACCCG
CCACAGCCAACGGTTCCTCTGTCCATGCGCCCGTCGCACACAACTCGTTA
CACGCCGCGTCCTCCGACGCACCTGTCGCCTCTTCCGAGCACCTACTTCA
CTCGCCCGAACGTGCGCGCGTGTCGTCCGCCGCGCTGCAAGCCAATCTTC
ACGCCGCGTCTCACTCGCCCGTGTTGCCGTCGCATCGCTCGCCACAGCGT
TCTGACGCGCGCGCTGCACAAGCGGCGCACACTGTTGTTGAGTCTGCGTC
GCAGCAGGCTGCAGCGTTCAACATGGTGTCCTCCTTCAGTGACCTTTCTC
TCAACGCAGGTATGGAGTATCCGCCTGCGCTGCAAATCATGCCTATTCCG
CCTCAGCAGATCATTCCGATCAGTCCGCAGCATGCTGCTCAAGTAGCTCA
ACAGAACCGTCGACATCACCCTCATGCCCACGCTCATCATCACCCTCACC
AACATTCTATCATGCACAATCACAACCAGCAACACACTTTCCAATTGTGG
GTGCCGCAGGAGCGTGTCGGCGCGGTGATCGGCGGTCATGGTGCGGTTAT
TCGCTCTTTGCAGGAAAAGTCCGGCGCCGCTATTCAAGTTCACAACGATA
CTGTTCGTGACGATCGCAAGCTTTTCACTATTTTTGGCACCCGAACGCAG
TACGAGACTGCCGCTCAGCTTGTCAATGAAATTGTGGAACGACCTCGTCC
GTCTTCGTCCTCGTCGCATTACCCTTCTCATCATCACAACGCTTCGCTGG
ACGCGCGTTCTCATTATTCGACTTCAATACAGTCTAGCAATCACATGTCA
ACAACAAAGTCTTCTACTTCTGACATGTGTAAAACTGTCTACGTTCCCAC
TTCCTGTGTCGGTCTTGTAATTGGGCGCAATGGGGAAACTATAAAGAGCT
TGCAAGATAGATCGGGCGCCGAGATCAAAGTCACCCCGGACAGAAAGGCC
ACTCCGGGATCGGATGACCGTTCCATTCTCATCTCTGGCACGGAGGAAGC
CATTGCTACCGCCCATCAGCTTGTGTCGGAGATTGTGAACGACGCTCGCT
CAAGACGTCCCTCGCAGCACGGAGGCTTGTCGTCGGGCTCTACGTACAAG
GGGCAGCCGGTGTTCATGGAGACGCTGGCCGTTCCGAACGAGAAGGTGGG
TCTTATCATAGGTAAGAAGGGAATCACCATTCGAGAGTTGCAAATGAAGT
CGGGCGCCAGCATCCAGGTTGCCAAGGACGACAACAGCGTTCGTAGCGAC
GGCAGTCGCCCCATCACCATCACCGGTTCCAGGGCTCAAGTGGAAGATGC
CAAGGCCATGATTGCTAGCAAGATCAACGTCAACATGCTTACTACCATCC
ATCCCCCTACTACTTTTCAATCCTCACTGGTTGGCACGCATGGCATGCCG
CTAGCGCCGGGCCAACCGCCTGGTCTGCATCGCCATCCAATGGCTTACAT
GCCATATTTTGGATATAACAACGTCGCGCCATTGCCACAACATCGCCATT
TTGCGCAGCAGGCCAGTCAGATTCCTTTCAACCCCGCGCTACACCAATCT
CAGCAACAACAACAACCACCACCTCCTCCCCCTCCTCCTCCTCCGTCTTC
ACAGCAACAAGTTCTTCATGACCAGAGCCCCCCTCCTCCTCCACCAAGCC
AGTCACAAGCGGAACAAGATTCACAATTAGCTTCTGCTCCCATGGTTGCC
CAAGCGCAGCAACAATTGGATGGCTTAACTCCTCCAGTAAACATGGTGGC
AGGTGAAGCAAATCCGGGCGGCTTTGTCATGTTCCCTTCACATCCGTTCC
ACCCGATGGCCTCTCAGATTCAGCCTCAGCACATCTATCCGGGAATGGCC
AACACCAGAGTGTTCCCTCGTGAAGCACAAGCACATGCGCAAGCGCAGAT
GTTTGCACATGCGCAGGCACAGGCACAAGCGCAGGCTCAGATGCACACAC
AGCCGTTTGCCCAAGTTCAGCCTCTGGGCTCCGTGCCATCGAATGAAAAT
GCGGAAGTGGCTGCTCACCTTGACCAACAATCCAACGAAACAGTCCAAAA
TTCAGCCCCGATACCGAGTGAGATAGAGCAACCAGACCGATAG