Gcaud2292.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2292.t1
Unique Name	Gcaud2292.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	603

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_220_length_36054_cov_4.510163	contig	NODE_220_length_36054_cov_4.510163:23082..24890 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2292	Gcaud2292	Gracilaria caudata M_176_S67 male	gene	NODE_220_length_36054_cov_4.510163 23082..24890 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2292.t1.stop1	Gcaud2292.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_220_length_36054_cov_4.510163 23082..23084 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2292.t1.CDS1	Gcaud2292.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_220_length_36054_cov_4.510163 23082..24890 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2292.t1.exon1	Gcaud2292.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_220_length_36054_cov_4.510163 23082..24890 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2292.t1.start1	Gcaud2292.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_220_length_36054_cov_4.510163 24888..24890 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2292.t1	Gcaud2292.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_220_length_36054_cov_4.510163 23082..24890 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_220_length_36054_cov_4.510163:23082..24890-
coding sequence from alignment at NODE_220_length_36054_cov_4.510163:23082..24890-

mRNA sequence

>Gcaud2292.t1 ID=Gcaud2292.t1|Name=Gcaud2292.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=603bp
MSEPKKASGDHEESFFTALADVTNRSQKSVRSSGKMFMITDTSPASPLVK
QRSLHSPHGKVQEKKQLRSPTSYTSAITQSPAVSQSATSDEAKVVRNHVT
FDSPNAHSSASTVPKHPHSFPSKQNPTNVAQVTLFRAESVAHSPKVSKIP
VSAGNATRAPSGDKVGHDEFGTPKLAPAKSSTRKPAKSIVADFTPPPSKI
PTRKRRTPSYARSTKASKRRSQWTKLSTVQRETDRGTNVQHATRLNFSNT
IPVSPEVLHRKTGRIRKMPSPKKSTGFKPNPTPRYLHKPRPVVRPTAKSE
AVLLGRTRTPPVPSPPSFAQRKPTPTVSKPFNIGSIELHENRMQQIQARR
KTQEQEEHRRRNVRPVKLQREILDGPTFVPNLDNKVATVPVDPVPWAAER
RERTLAFEAAQRARIAEMDAMKEKAQKMRELAEEERLREEYERKRFRPRP
IPRSHYKPDTPPKRRASLAFMYLKEENAERMEDEDGNELGSFFSKLGITD
EIHTTSTREQRDENVRRRLSLKATERKDLYSIVEQEHETKPSLDQREVGE
IQTMNEANKENAVPKSMATHKTTRDSGKQQRQSGLGPMRLFAEIRNTLLG
HR*

spliced messenger RNA

>Gcaud2292.t1 ID=Gcaud2292.t1|Name=Gcaud2292.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1809bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:23082..24890- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGAGCCCAAAAAGGCTTCTGGTGATCACGAAGAAAGTTTTTTCAC
TGCACTTGCTGACGTTACCAATCGATCACAGAAATCGGTGCGATCATCCG
GGAAAATGTTCATGATCACTGATACTTCTCCAGCTTCACCTCTCGTGAAA
CAGCGGTCTTTGCATTCGCCTCATGGAAAGGTCCAGGAAAAGAAACAGCT
TCGGTCCCCAACTTCCTATACTTCCGCCATAACCCAGTCTCCAGCTGTCT
CGCAATCCGCAACTTCAGACGAAGCTAAGGTCGTACGTAACCATGTCACC
TTTGACTCACCGAATGCTCACTCTTCAGCCTCTACCGTCCCAAAACATCC
TCATTCGTTTCCTTCAAAGCAAAACCCTACGAATGTGGCGCAGGTTACTC
TATTTCGTGCCGAATCCGTGGCTCACTCGCCGAAGGTCTCTAAAATTCCG
GTATCAGCCGGAAACGCAACAAGAGCCCCATCAGGAGACAAGGTAGGACA
CGATGAATTTGGGACACCGAAACTGGCTCCTGCGAAATCTTCAACTAGAA
AGCCGGCAAAATCAATTGTAGCAGACTTCACTCCCCCACCTTCAAAGATC
CCAACTCGCAAGCGGCGCACTCCAAGTTATGCTCGCTCTACAAAGGCATC
GAAACGTCGTTCACAGTGGACCAAGCTATCCACTGTTCAGAGAGAAACTG
ATAGGGGCACCAATGTCCAACATGCTACAAGGTTGAACTTTTCAAACACC
ATTCCCGTATCTCCTGAGGTATTGCATCGAAAAACAGGTCGTATCAGAAA
GATGCCCTCTCCGAAGAAGAGCACAGGTTTCAAGCCAAATCCGACACCTC
GTTATCTTCACAAACCCCGTCCCGTTGTCCGTCCTACGGCCAAGAGTGAA
GCTGTTCTTCTTGGTCGGACCCGGACTCCCCCTGTTCCGTCCCCGCCTTC
GTTTGCTCAACGTAAGCCGACGCCAACCGTTTCCAAACCATTCAATATTG
GAAGTATTGAGCTACACGAAAACCGTATGCAGCAAATTCAGGCCAGAAGG
AAAACACAGGAACAAGAAGAGCATCGTCGCCGTAATGTCCGACCTGTTAA
GCTTCAACGTGAAATACTGGATGGTCCCACGTTTGTTCCCAACCTGGACA
ATAAAGTCGCGACTGTACCAGTCGATCCAGTTCCATGGGCAGCTGAACGA
AGAGAACGAACTCTTGCTTTTGAGGCAGCTCAACGTGCACGCATTGCAGA
AATGGATGCCATGAAGGAGAAAGCCCAGAAAATGCGCGAACTTGCGGAGG
AAGAAAGGCTTCGTGAAGAGTATGAAAGAAAGAGATTCCGCCCCAGGCCC
ATACCAAGATCTCATTATAAGCCAGATACCCCACCAAAGAGAAGGGCTTC
ACTTGCATTTATGTATCTTAAGGAAGAGAATGCGGAAAGAATGGAAGATG
AAGATGGCAATGAGCTCGGGAGCTTCTTCTCAAAGCTGGGAATAACCGAT
GAGATCCATACAACCTCTACCCGCGAACAACGTGATGAGAATGTGAGACG
TCGTTTGTCCTTGAAAGCAACTGAGAGGAAGGATCTTTACTCTATTGTGG
AACAGGAGCATGAGACTAAGCCCTCATTGGACCAACGTGAAGTCGGAGAA
ATCCAAACTATGAATGAAGCAAACAAGGAAAACGCTGTTCCGAAGAGCAT
GGCAACCCACAAGACGACGCGAGATAGTGGAAAGCAGCAAAGACAGTCAG
GCCTTGGTCCTATGAGACTCTTTGCTGAGATACGAAACACTCTGCTTGGT
CACCGTTAG

protein sequence of Gcaud2292.t1

>Gcaud2292.t1 ID=Gcaud2292.t1|Name=Gcaud2292.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=603bp
MSEPKKASGDHEESFFTALADVTNRSQKSVRSSGKMFMITDTSPASPLVK
QRSLHSPHGKVQEKKQLRSPTSYTSAITQSPAVSQSATSDEAKVVRNHVT
FDSPNAHSSASTVPKHPHSFPSKQNPTNVAQVTLFRAESVAHSPKVSKIP
VSAGNATRAPSGDKVGHDEFGTPKLAPAKSSTRKPAKSIVADFTPPPSKI
PTRKRRTPSYARSTKASKRRSQWTKLSTVQRETDRGTNVQHATRLNFSNT
IPVSPEVLHRKTGRIRKMPSPKKSTGFKPNPTPRYLHKPRPVVRPTAKSE
AVLLGRTRTPPVPSPPSFAQRKPTPTVSKPFNIGSIELHENRMQQIQARR
KTQEQEEHRRRNVRPVKLQREILDGPTFVPNLDNKVATVPVDPVPWAAER
RERTLAFEAAQRARIAEMDAMKEKAQKMRELAEEERLREEYERKRFRPRP
IPRSHYKPDTPPKRRASLAFMYLKEENAERMEDEDGNELGSFFSKLGITD
EIHTTSTREQRDENVRRRLSLKATERKDLYSIVEQEHETKPSLDQREVGE
IQTMNEANKENAVPKSMATHKTTRDSGKQQRQSGLGPMRLFAEIRNTLLG
HR*

mRNA from alignment at NODE_220_length_36054_cov_4.510163:23082..24890-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2292.t1 ID=Gcaud2292.t1|Name=Gcaud2292.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1809bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:23082..24890- (Gracilaria caudata M_176_S67 male)
ATGTCTGAGCCCAAAAAGGCTTCTGGTGATCACGAAGAAAGTTTTTTCAC
TGCACTTGCTGACGTTACCAATCGATCACAGAAATCGGTGCGATCATCCG
GGAAAATGTTCATGATCACTGATACTTCTCCAGCTTCACCTCTCGTGAAA
CAGCGGTCTTTGCATTCGCCTCATGGAAAGGTCCAGGAAAAGAAACAGCT
TCGGTCCCCAACTTCCTATACTTCCGCCATAACCCAGTCTCCAGCTGTCT
CGCAATCCGCAACTTCAGACGAAGCTAAGGTCGTACGTAACCATGTCACC
TTTGACTCACCGAATGCTCACTCTTCAGCCTCTACCGTCCCAAAACATCC
TCATTCGTTTCCTTCAAAGCAAAACCCTACGAATGTGGCGCAGGTTACTC
TATTTCGTGCCGAATCCGTGGCTCACTCGCCGAAGGTCTCTAAAATTCCG
GTATCAGCCGGAAACGCAACAAGAGCCCCATCAGGAGACAAGGTAGGACA
CGATGAATTTGGGACACCGAAACTGGCTCCTGCGAAATCTTCAACTAGAA
AGCCGGCAAAATCAATTGTAGCAGACTTCACTCCCCCACCTTCAAAGATC
CCAACTCGCAAGCGGCGCACTCCAAGTTATGCTCGCTCTACAAAGGCATC
GAAACGTCGTTCACAGTGGACCAAGCTATCCACTGTTCAGAGAGAAACTG
ATAGGGGCACCAATGTCCAACATGCTACAAGGTTGAACTTTTCAAACACC
ATTCCCGTATCTCCTGAGGTATTGCATCGAAAAACAGGTCGTATCAGAAA
GATGCCCTCTCCGAAGAAGAGCACAGGTTTCAAGCCAAATCCGACACCTC
GTTATCTTCACAAACCCCGTCCCGTTGTCCGTCCTACGGCCAAGAGTGAA
GCTGTTCTTCTTGGTCGGACCCGGACTCCCCCTGTTCCGTCCCCGCCTTC
GTTTGCTCAACGTAAGCCGACGCCAACCGTTTCCAAACCATTCAATATTG
GAAGTATTGAGCTACACGAAAACCGTATGCAGCAAATTCAGGCCAGAAGG
AAAACACAGGAACAAGAAGAGCATCGTCGCCGTAATGTCCGACCTGTTAA
GCTTCAACGTGAAATACTGGATGGTCCCACGTTTGTTCCCAACCTGGACA
ATAAAGTCGCGACTGTACCAGTCGATCCAGTTCCATGGGCAGCTGAACGA
AGAGAACGAACTCTTGCTTTTGAGGCAGCTCAACGTGCACGCATTGCAGA
AATGGATGCCATGAAGGAGAAAGCCCAGAAAATGCGCGAACTTGCGGAGG
AAGAAAGGCTTCGTGAAGAGTATGAAAGAAAGAGATTCCGCCCCAGGCCC
ATACCAAGATCTCATTATAAGCCAGATACCCCACCAAAGAGAAGGGCTTC
ACTTGCATTTATGTATCTTAAGGAAGAGAATGCGGAAAGAATGGAAGATG
AAGATGGCAATGAGCTCGGGAGCTTCTTCTCAAAGCTGGGAATAACCGAT
GAGATCCATACAACCTCTACCCGCGAACAACGTGATGAGAATGTGAGACG
TCGTTTGTCCTTGAAAGCAACTGAGAGGAAGGATCTTTACTCTATTGTGG
AACAGGAGCATGAGACTAAGCCCTCATTGGACCAACGTGAAGTCGGAGAA
ATCCAAACTATGAATGAAGCAAACAAGGAAAACGCTGTTCCGAAGAGCAT
GGCAACCCACAAGACGACGCGAGATAGTGGAAAGCAGCAAAGACAGTCAG
GCCTTGGTCCTATGAGACTCTTTGCTGAGATACGAAACACTCTGCTTGGT
CACCGTTAG

Coding sequence (CDS) from alignment at NODE_220_length_36054_cov_4.510163:23082..24890-

>Gcaud2292.t1 ID=Gcaud2292.t1|Name=Gcaud2292.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1809bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:23082..24890- (Gracilaria caudata M_176_S67 male)
ATGTCTGAGCCCAAAAAGGCTTCTGGTGATCACGAAGAAAGTTTTTTCAC
TGCACTTGCTGACGTTACCAATCGATCACAGAAATCGGTGCGATCATCCG
GGAAAATGTTCATGATCACTGATACTTCTCCAGCTTCACCTCTCGTGAAA
CAGCGGTCTTTGCATTCGCCTCATGGAAAGGTCCAGGAAAAGAAACAGCT
TCGGTCCCCAACTTCCTATACTTCCGCCATAACCCAGTCTCCAGCTGTCT
CGCAATCCGCAACTTCAGACGAAGCTAAGGTCGTACGTAACCATGTCACC
TTTGACTCACCGAATGCTCACTCTTCAGCCTCTACCGTCCCAAAACATCC
TCATTCGTTTCCTTCAAAGCAAAACCCTACGAATGTGGCGCAGGTTACTC
TATTTCGTGCCGAATCCGTGGCTCACTCGCCGAAGGTCTCTAAAATTCCG
GTATCAGCCGGAAACGCAACAAGAGCCCCATCAGGAGACAAGGTAGGACA
CGATGAATTTGGGACACCGAAACTGGCTCCTGCGAAATCTTCAACTAGAA
AGCCGGCAAAATCAATTGTAGCAGACTTCACTCCCCCACCTTCAAAGATC
CCAACTCGCAAGCGGCGCACTCCAAGTTATGCTCGCTCTACAAAGGCATC
GAAACGTCGTTCACAGTGGACCAAGCTATCCACTGTTCAGAGAGAAACTG
ATAGGGGCACCAATGTCCAACATGCTACAAGGTTGAACTTTTCAAACACC
ATTCCCGTATCTCCTGAGGTATTGCATCGAAAAACAGGTCGTATCAGAAA
GATGCCCTCTCCGAAGAAGAGCACAGGTTTCAAGCCAAATCCGACACCTC
GTTATCTTCACAAACCCCGTCCCGTTGTCCGTCCTACGGCCAAGAGTGAA
GCTGTTCTTCTTGGTCGGACCCGGACTCCCCCTGTTCCGTCCCCGCCTTC
GTTTGCTCAACGTAAGCCGACGCCAACCGTTTCCAAACCATTCAATATTG
GAAGTATTGAGCTACACGAAAACCGTATGCAGCAAATTCAGGCCAGAAGG
AAAACACAGGAACAAGAAGAGCATCGTCGCCGTAATGTCCGACCTGTTAA
GCTTCAACGTGAAATACTGGATGGTCCCACGTTTGTTCCCAACCTGGACA
ATAAAGTCGCGACTGTACCAGTCGATCCAGTTCCATGGGCAGCTGAACGA
AGAGAACGAACTCTTGCTTTTGAGGCAGCTCAACGTGCACGCATTGCAGA
AATGGATGCCATGAAGGAGAAAGCCCAGAAAATGCGCGAACTTGCGGAGG
AAGAAAGGCTTCGTGAAGAGTATGAAAGAAAGAGATTCCGCCCCAGGCCC
ATACCAAGATCTCATTATAAGCCAGATACCCCACCAAAGAGAAGGGCTTC
ACTTGCATTTATGTATCTTAAGGAAGAGAATGCGGAAAGAATGGAAGATG
AAGATGGCAATGAGCTCGGGAGCTTCTTCTCAAAGCTGGGAATAACCGAT
GAGATCCATACAACCTCTACCCGCGAACAACGTGATGAGAATGTGAGACG
TCGTTTGTCCTTGAAAGCAACTGAGAGGAAGGATCTTTACTCTATTGTGG
AACAGGAGCATGAGACTAAGCCCTCATTGGACCAACGTGAAGTCGGAGAA
ATCCAAACTATGAATGAAGCAAACAAGGAAAACGCTGTTCCGAAGAGCAT
GGCAACCCACAAGACGACGCGAGATAGTGGAAAGCAGCAAAGACAGTCAG
GCCTTGGTCCTATGAGACTCTTTGCTGAGATACGAAACACTCTGCTTGGT
CACCGTTAG