Gcaud3399.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3399.t1
Unique Name	Gcaud3399.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	423

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_100_length_51433_cov_4.606891	contig	NODE_100_length_51433_cov_4.606891:38015..39422 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CML179CT
Preferred name	LIAS
PFAMs	LIAS_N,Radical_SAM
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC01978
KEGG ko	ko:K03644
KEGG Reaction	R07767,R07768
KEGG Pathway	ko00785,ko01100,map00785,map01100
GOs	GO:0001505,GO:0001838,GO:0001841,GO:0001843,GO:0002009,GO:0002237,GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006464,GO:0006520,GO:0006544,GO:0006546,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006790,GO:0006807,GO:0006950,GO:0006952,GO:0006954,GO:0006979,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009058,GO:0009063,GO:0009069,GO:0009071,GO:0009106,GO:0009107,GO:0009108,GO:0009249,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0010033,GO:0010467,GO:0014020,GO:0016053,GO:0016054,GO:0016331,GO:0016740,GO:0016782,GO:0016783,GO:0016992,GO:0017144,GO:0018065,GO:0018130,GO:0018193,GO:0018205,GO:0019538,GO:0019752,GO:0021915,GO:0031974,GO:0032496,GO:0032501,GO:0032502,GO:0032787,GO:0033993,GO:0034641,GO:0035148,GO:0035239,GO:0035295,GO:0036211,GO:0042133,GO:0042135,GO:0042221,GO:0042737,GO:0043009,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046395,GO:0046483,GO:0046872,GO:0046914,GO:0048598,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0050896,GO:0051186,GO:0051188,GO:0051604,GO:0051704,GO:0051707,GO:0060429,GO:0060562,GO:0060606,GO:0065007,GO:0065008,GO:0070013,GO:0070283,GO:0071704,GO:0072175,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901700
Evalue	3.56e-151
EggNOG OGs	COG0320@1\|root,KOG2672@2759\|Eukaryota
EC	2.8.1.8
Description	lipoate synthase activity
COG category	H
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3399	Gcaud3399	Gracilaria caudata M_176_S67 male	gene	NODE_100_length_51433_cov_4.606891 38015..39422 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3399.t1	Gcaud3399.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_100_length_51433_cov_4.606891 38015..39422 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3399.t1.stop1	Gcaud3399.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_100_length_51433_cov_4.606891 38015..38017 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3399.t1.CDS1	Gcaud3399.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_100_length_51433_cov_4.606891 38015..39110 -
Gcaud3399.t1.CDS2	Gcaud3399.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_100_length_51433_cov_4.606891 39250..39422 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3399.t1.exon1	Gcaud3399.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_100_length_51433_cov_4.606891 38015..39110 -
Gcaud3399.t1.exon2	Gcaud3399.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_100_length_51433_cov_4.606891 39250..39422 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3399.t1.intron1	Gcaud3399.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_100_length_51433_cov_4.606891 39111..39249 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3399.t1.start1	Gcaud3399.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_100_length_51433_cov_4.606891 39420..39422 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_100_length_51433_cov_4.606891:38015..39422-
coding sequence from alignment at NODE_100_length_51433_cov_4.606891:38015..39422-

mRNA sequence

>Gcaud3399.t1 ID=Gcaud3399.t1|Name=Gcaud3399.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=423bp
MGAKWHQVNELAMDENCIRFLPQRQRHLARVRSSLVRRAIAKAIVKIVNV
LSLSLLKSLTAPLRMFTSEAAAKSRYGKRLADLRAQLAAEADAPLPISFF
TPGASSSVIPARTDAYEDPSKPAWLKVRPPGDHEAEAEYQRLRKSLRGLK
LSTVCEEARCPNIGECWGGGTATIMLMGDTCTRGCRFCNIKTSRAPPPLD
ENEPDNVAVAVAKWGLKYIVLTSVDRDDIPDGGSTHIARTVQGLKQRQPD
LLVETLSPDFAGDEQAIDRVVTSGLDVFAHNVETVERLQGVVRDRRAGYA
QSLKVLKRAKSIRPDVVTKTSLMLGVGESEKEVRQAMQDCLDVGVEVITL
GQYLRPSKRHLKVEQWVTPEEFDSWKVEGEKMGFSYVASGPLVRSSYRAG
EFFLESLIKKRRAVASASSAAE*

spliced messenger RNA

>Gcaud3399.t1 ID=Gcaud3399.t1|Name=Gcaud3399.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:38015..39422- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGCCAAGTGGCACCAAGTGAATGAGCTGGCCATGGACGAGAATTG
CATTCGGTTCCTCCCACAACGACAACGCCATCTCGCTCGAGTTCGGTCGT
CACTTGTTAGGAGAGCCATTGCTAAAGCGATTGTCAAGATTGTCAATGTG
CTTAGTTTGAGTCTTCTGAAGAGTCTAACGGCTCCACTTCGCATGTTTAC
GTCCGAAGCGGCGGCAAAATCTCGATATGGCAAACGTCTGGCTGATCTAC
GCGCCCAACTAGCAGCTGAAGCGGACGCACCGCTTCCAATAAGCTTTTTT
ACCCCTGGCGCATCATCATCAGTGATTCCGGCACGGACAGATGCCTACGA
GGACCCGTCAAAACCAGCTTGGCTGAAAGTGAGACCACCAGGAGATCACG
AAGCCGAGGCAGAGTATCAAAGATTGCGCAAATCTCTTCGTGGGCTTAAA
CTATCGACTGTGTGTGAGGAAGCAAGGTGTCCTAATATTGGCGAATGTTG
GGGTGGTGGAACTGCTACAATCATGCTAATGGGCGATACATGTACACGAG
GATGTCGTTTTTGTAACATCAAGACTTCCAGAGCGCCTCCTCCGCTTGAT
GAGAACGAACCGGACAACGTGGCCGTTGCGGTGGCAAAGTGGGGGTTGAA
GTACATTGTGCTCACAAGTGTTGATAGGGATGATATACCGGATGGTGGAT
CTACTCATATTGCGCGCACGGTGCAAGGTCTTAAACAACGACAGCCAGAT
TTATTGGTTGAGACTTTGTCTCCAGATTTTGCTGGAGACGAGCAGGCGAT
TGACAGAGTGGTTACCTCTGGTTTAGACGTATTCGCACACAATGTGGAAA
CAGTGGAACGCTTGCAAGGAGTTGTACGAGACCGACGAGCGGGATATGCT
CAAAGTCTGAAGGTCCTGAAGCGTGCGAAAAGTATTCGACCAGACGTGGT
TACCAAGACATCTCTAATGCTTGGTGTTGGCGAGAGTGAAAAGGAGGTGC
GTCAAGCAATGCAAGACTGTCTCGATGTGGGAGTTGAGGTAATCACGCTC
GGACAGTATTTGAGGCCGTCTAAGAGACATCTCAAAGTGGAACAATGGGT
GACTCCAGAGGAGTTTGATTCCTGGAAAGTTGAAGGTGAGAAGATGGGAT
TCTCGTACGTGGCTTCCGGCCCACTTGTGCGTAGTTCTTACCGCGCGGGA
GAATTCTTTTTGGAATCACTTATCAAGAAAAGAAGGGCTGTCGCCTCGGC
ATCATCTGCAGCAGAATGA

protein sequence of Gcaud3399.t1

>Gcaud3399.t1 ID=Gcaud3399.t1|Name=Gcaud3399.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=423bp
MGAKWHQVNELAMDENCIRFLPQRQRHLARVRSSLVRRAIAKAIVKIVNV
LSLSLLKSLTAPLRMFTSEAAAKSRYGKRLADLRAQLAAEADAPLPISFF
TPGASSSVIPARTDAYEDPSKPAWLKVRPPGDHEAEAEYQRLRKSLRGLK
LSTVCEEARCPNIGECWGGGTATIMLMGDTCTRGCRFCNIKTSRAPPPLD
ENEPDNVAVAVAKWGLKYIVLTSVDRDDIPDGGSTHIARTVQGLKQRQPD
LLVETLSPDFAGDEQAIDRVVTSGLDVFAHNVETVERLQGVVRDRRAGYA
QSLKVLKRAKSIRPDVVTKTSLMLGVGESEKEVRQAMQDCLDVGVEVITL
GQYLRPSKRHLKVEQWVTPEEFDSWKVEGEKMGFSYVASGPLVRSSYRAG
EFFLESLIKKRRAVASASSAAE*

mRNA from alignment at NODE_100_length_51433_cov_4.606891:38015..39422-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3399.t1 ID=Gcaud3399.t1|Name=Gcaud3399.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1408bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:38015..39422- (Gracilaria caudata M_176_S67 male)
ATGGGTGCCAAGTGGCACCAAGTGAATGAGCTGGCCATGGACGAGAATTG
CATTCGGTTCCTCCCACAACGACAACGCCATCTCGCTCGAGTTCGGTCGT
CACTTGTTAGGAGAGCCATTGCTAAAGCGATTGTCAAGATTGTCAATGTG
CTTAGTTTGAGTCTTCTGAAGAGGTACATCATCTTCCCAGTGGCGATCCC
ATTTTTCTAATCGGCCGACAATCTGAGCACCACAAACCTCGTCCACGATA
TTGTTAACCTCACATGCAGAGCGACCTGCCGTCCATTTTCCGACGATGTG
GACTCGTAACAGTCTAACGGCTCCACTTCGCATGTTTACGTCCGAAGCGG
CGGCAAAATCTCGATATGGCAAACGTCTGGCTGATCTACGCGCCCAACTA
GCAGCTGAAGCGGACGCACCGCTTCCAATAAGCTTTTTTACCCCTGGCGC
ATCATCATCAGTGATTCCGGCACGGACAGATGCCTACGAGGACCCGTCAA
AACCAGCTTGGCTGAAAGTGAGACCACCAGGAGATCACGAAGCCGAGGCA
GAGTATCAAAGATTGCGCAAATCTCTTCGTGGGCTTAAACTATCGACTGT
GTGTGAGGAAGCAAGGTGTCCTAATATTGGCGAATGTTGGGGTGGTGGAA
CTGCTACAATCATGCTAATGGGCGATACATGTACACGAGGATGTCGTTTT
TGTAACATCAAGACTTCCAGAGCGCCTCCTCCGCTTGATGAGAACGAACC
GGACAACGTGGCCGTTGCGGTGGCAAAGTGGGGGTTGAAGTACATTGTGC
TCACAAGTGTTGATAGGGATGATATACCGGATGGTGGATCTACTCATATT
GCGCGCACGGTGCAAGGTCTTAAACAACGACAGCCAGATTTATTGGTTGA
GACTTTGTCTCCAGATTTTGCTGGAGACGAGCAGGCGATTGACAGAGTGG
TTACCTCTGGTTTAGACGTATTCGCACACAATGTGGAAACAGTGGAACGC
TTGCAAGGAGTTGTACGAGACCGACGAGCGGGATATGCTCAAAGTCTGAA
GGTCCTGAAGCGTGCGAAAAGTATTCGACCAGACGTGGTTACCAAGACAT
CTCTAATGCTTGGTGTTGGCGAGAGTGAAAAGGAGGTGCGTCAAGCAATG
CAAGACTGTCTCGATGTGGGAGTTGAGGTAATCACGCTCGGACAGTATTT
GAGGCCGTCTAAGAGACATCTCAAAGTGGAACAATGGGTGACTCCAGAGG
AGTTTGATTCCTGGAAAGTTGAAGGTGAGAAGATGGGATTCTCGTACGTG
GCTTCCGGCCCACTTGTGCGTAGTTCTTACCGCGCGGGAGAATTCTTTTT
GGAATCACTTATCAAGAAAAGAAGGGCTGTCGCCTCGGCATCATCTGCAG
CAGAATGA

Coding sequence (CDS) from alignment at NODE_100_length_51433_cov_4.606891:38015..39422-

>Gcaud3399.t1 ID=Gcaud3399.t1|Name=Gcaud3399.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1269bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:38015..39422- (Gracilaria caudata M_176_S67 male)
ATGGGTGCCAAGTGGCACCAAGTGAATGAGCTGGCCATGGACGAGAATTG
CATTCGGTTCCTCCCACAACGACAACGCCATCTCGCTCGAGTTCGGTCGT
CACTTGTTAGGAGAGCCATTGCTAAAGCGATTGTCAAGATTGTCAATGTG
CTTAGTTTGAGTCTTCTGAAGAGTCTAACGGCTCCACTTCGCATGTTTAC
GTCCGAAGCGGCGGCAAAATCTCGATATGGCAAACGTCTGGCTGATCTAC
GCGCCCAACTAGCAGCTGAAGCGGACGCACCGCTTCCAATAAGCTTTTTT
ACCCCTGGCGCATCATCATCAGTGATTCCGGCACGGACAGATGCCTACGA
GGACCCGTCAAAACCAGCTTGGCTGAAAGTGAGACCACCAGGAGATCACG
AAGCCGAGGCAGAGTATCAAAGATTGCGCAAATCTCTTCGTGGGCTTAAA
CTATCGACTGTGTGTGAGGAAGCAAGGTGTCCTAATATTGGCGAATGTTG
GGGTGGTGGAACTGCTACAATCATGCTAATGGGCGATACATGTACACGAG
GATGTCGTTTTTGTAACATCAAGACTTCCAGAGCGCCTCCTCCGCTTGAT
GAGAACGAACCGGACAACGTGGCCGTTGCGGTGGCAAAGTGGGGGTTGAA
GTACATTGTGCTCACAAGTGTTGATAGGGATGATATACCGGATGGTGGAT
CTACTCATATTGCGCGCACGGTGCAAGGTCTTAAACAACGACAGCCAGAT
TTATTGGTTGAGACTTTGTCTCCAGATTTTGCTGGAGACGAGCAGGCGAT
TGACAGAGTGGTTACCTCTGGTTTAGACGTATTCGCACACAATGTGGAAA
CAGTGGAACGCTTGCAAGGAGTTGTACGAGACCGACGAGCGGGATATGCT
CAAAGTCTGAAGGTCCTGAAGCGTGCGAAAAGTATTCGACCAGACGTGGT
TACCAAGACATCTCTAATGCTTGGTGTTGGCGAGAGTGAAAAGGAGGTGC
GTCAAGCAATGCAAGACTGTCTCGATGTGGGAGTTGAGGTAATCACGCTC
GGACAGTATTTGAGGCCGTCTAAGAGACATCTCAAAGTGGAACAATGGGT
GACTCCAGAGGAGTTTGATTCCTGGAAAGTTGAAGGTGAGAAGATGGGAT
TCTCGTACGTGGCTTCCGGCCCACTTGTGCGTAGTTCTTACCGCGCGGGA
GAATTCTTTTTGGAATCACTTATCAAGAAAAGAAGGGCTGTCGCCTCGGC
ATCATCTGCAGCAGAATGA