Gcaud2671.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2671.t1
Unique NameGcaud2671.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length173
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2143_length_6668_cov_4.609244contigNODE_2143_length_6668_cov_4.609244:3165..3683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2671Gcaud2671Gracilaria caudata M_176_S67 malegeneNODE_2143_length_6668_cov_4.609244 3165..3683 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2671.t1.start1Gcaud2671.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2143_length_6668_cov_4.609244 3165..3167 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2671.t1.CDS1Gcaud2671.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2143_length_6668_cov_4.609244 3165..3683 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2671.t1.exon1Gcaud2671.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2143_length_6668_cov_4.609244 3165..3683 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2671.t1.stop1Gcaud2671.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2143_length_6668_cov_4.609244 3681..3683 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2671.t1Gcaud2671.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2143_length_6668_cov_4.609244 3165..3683 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2671.t1 ID=Gcaud2671.t1|Name=Gcaud2671.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=173bp
MAFTYLVLTIVALFTLAFAGVVDLEDVVDLEDAVERYPNDCNMEPEVAYC
LHVMRTGTSLDAETSAHFIRLNEHLEHLARMECSWDSMEREQSAEECVGT
LSRLLEEEDDAVSMEEDMDLAFTERPAKKKKCMKKCTKPCYSMCKYKYTS
KKKIKKCRKKCKSKCKKKCSKY*
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spliced messenger RNA

>Gcaud2671.t1 ID=Gcaud2671.t1|Name=Gcaud2671.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=519bp|location=Sequence derived from alignment at NODE_2143_length_6668_cov_4.609244:3165..3683+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTCACGTACCTTGTTCTGACGATTGTCGCTTTGTTCACTCTCGC
TTTCGCGGGTGTGGTCGATCTGGAAGATGTGGTCGATCTGGAAGATGCTG
TGGAGCGTTACCCCAACGACTGCAACATGGAGCCGGAAGTGGCGTACTGT
CTACACGTGATGCGGACCGGTACATCACTCGACGCCGAGACGAGTGCGCA
CTTCATTCGTCTGAACGAGCATCTGGAGCATCTGGCGCGCATGGAGTGCT
CGTGGGATTCGATGGAGCGCGAGCAGAGTGCGGAAGAGTGCGTGGGAACA
CTTTCCAGGCTCCTGGAAGAGGAAGACGACGCGGTGTCGATGGAAGAGGA
CATGGATTTGGCGTTCACCGAGCGTCCGGCGAAGAAGAAGAAGTGTATGA
AGAAGTGCACGAAGCCGTGCTACAGCATGTGCAAGTATAAGTATACCAGC
AAGAAGAAGATCAAGAAATGCCGAAAGAAGTGCAAGAGCAAGTGTAAGAA
GAAGTGCTCGAAGTACTAG
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protein sequence of Gcaud2671.t1

>Gcaud2671.t1 ID=Gcaud2671.t1|Name=Gcaud2671.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=173bp
MAFTYLVLTIVALFTLAFAGVVDLEDVVDLEDAVERYPNDCNMEPEVAYC
LHVMRTGTSLDAETSAHFIRLNEHLEHLARMECSWDSMEREQSAEECVGT
LSRLLEEEDDAVSMEEDMDLAFTERPAKKKKCMKKCTKPCYSMCKYKYTS
KKKIKKCRKKCKSKCKKKCSKY*
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mRNA from alignment at NODE_2143_length_6668_cov_4.609244:3165..3683+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2671.t1 ID=Gcaud2671.t1|Name=Gcaud2671.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=519bp|location=Sequence derived from alignment at NODE_2143_length_6668_cov_4.609244:3165..3683+ (Gracilaria caudata M_176_S67 male)
ATGGCTTTCACGTACCTTGTTCTGACGATTGTCGCTTTGTTCACTCTCGC
TTTCGCGGGTGTGGTCGATCTGGAAGATGTGGTCGATCTGGAAGATGCTG
TGGAGCGTTACCCCAACGACTGCAACATGGAGCCGGAAGTGGCGTACTGT
CTACACGTGATGCGGACCGGTACATCACTCGACGCCGAGACGAGTGCGCA
CTTCATTCGTCTGAACGAGCATCTGGAGCATCTGGCGCGCATGGAGTGCT
CGTGGGATTCGATGGAGCGCGAGCAGAGTGCGGAAGAGTGCGTGGGAACA
CTTTCCAGGCTCCTGGAAGAGGAAGACGACGCGGTGTCGATGGAAGAGGA
CATGGATTTGGCGTTCACCGAGCGTCCGGCGAAGAAGAAGAAGTGTATGA
AGAAGTGCACGAAGCCGTGCTACAGCATGTGCAAGTATAAGTATACCAGC
AAGAAGAAGATCAAGAAATGCCGAAAGAAGTGCAAGAGCAAGTGTAAGAA
GAAGTGCTCGAAGTACTAG
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Coding sequence (CDS) from alignment at NODE_2143_length_6668_cov_4.609244:3165..3683+

>Gcaud2671.t1 ID=Gcaud2671.t1|Name=Gcaud2671.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=519bp|location=Sequence derived from alignment at NODE_2143_length_6668_cov_4.609244:3165..3683+ (Gracilaria caudata M_176_S67 male)
ATGGCTTTCACGTACCTTGTTCTGACGATTGTCGCTTTGTTCACTCTCGC
TTTCGCGGGTGTGGTCGATCTGGAAGATGTGGTCGATCTGGAAGATGCTG
TGGAGCGTTACCCCAACGACTGCAACATGGAGCCGGAAGTGGCGTACTGT
CTACACGTGATGCGGACCGGTACATCACTCGACGCCGAGACGAGTGCGCA
CTTCATTCGTCTGAACGAGCATCTGGAGCATCTGGCGCGCATGGAGTGCT
CGTGGGATTCGATGGAGCGCGAGCAGAGTGCGGAAGAGTGCGTGGGAACA
CTTTCCAGGCTCCTGGAAGAGGAAGACGACGCGGTGTCGATGGAAGAGGA
CATGGATTTGGCGTTCACCGAGCGTCCGGCGAAGAAGAAGAAGTGTATGA
AGAAGTGCACGAAGCCGTGCTACAGCATGTGCAAGTATAAGTATACCAGC
AAGAAGAAGATCAAGAAATGCCGAAAGAAGTGCAAGAGCAAGTGTAAGAA
GAAGTGCTCGAAGTACTAG
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