Gcaud1750.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1750.t1
Unique Name	Gcaud1750.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	262

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2120_length_6764_cov_4.274090	contig	NODE_2120_length_6764_cov_4.274090:5963..6748 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1750	Gcaud1750	Gracilaria caudata M_176_S67 male	gene	NODE_2120_length_6764_cov_4.274090 5963..6748 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1750.t1.stop1	Gcaud1750.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2120_length_6764_cov_4.274090 5963..5965 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1750.t1.CDS1	Gcaud1750.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2120_length_6764_cov_4.274090 5963..6748 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1750.t1.exon1	Gcaud1750.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2120_length_6764_cov_4.274090 5963..6748 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1750.t1.start1	Gcaud1750.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2120_length_6764_cov_4.274090 6746..6748 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1750.t1	Gcaud1750.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2120_length_6764_cov_4.274090 5963..6748 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2120_length_6764_cov_4.274090:5963..6748-
coding sequence from alignment at NODE_2120_length_6764_cov_4.274090:5963..6748-

mRNA sequence

>Gcaud1750.t1 ID=Gcaud1750.t1|Name=Gcaud1750.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=262bp
MWMNEDNVQAFVACSPHADSGRGPPITQLIESMRAFAMRGRLFVVESSLS
ALAMIILYPRQRVQFIHRHGFKVFFETLQFHPCQSSTVSLVFWMITTMFS
EPVKSAKESEAFWNAFVIDQGSQELVRSISNVRRGVSSEKDRVELLEHGF
YAMLAVVRFNSSMRKSLIDSGCIQHVQTALTDISNNTVTGVQNVDKVMMT
HKARLGTVLCDVIKELGADGSGYAYMREQNVKRSLEDLMSMYSGDGTFAH
SCRDAIAMLSY*

spliced messenger RNA

>Gcaud1750.t1 ID=Gcaud1750.t1|Name=Gcaud1750.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=786bp|location=Sequence derived from alignment at NODE_2120_length_6764_cov_4.274090:5963..6748- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGATGAATGAAGATAATGTGCAGGCTTTCGTTGCATGTAGCCCTCA
CGCGGATAGTGGACGTGGACCGCCAATAACACAATTGATTGAGTCAATGC
GAGCGTTTGCAATGAGAGGACGGTTGTTTGTTGTGGAATCGAGTTTGTCA
GCTCTGGCAATGATCATTTTGTATCCCAGACAGCGGGTGCAATTCATCCA
CCGGCACGGTTTCAAGGTGTTCTTTGAGACGCTGCAGTTCCATCCGTGCC
AGTCATCAACAGTGTCGTTGGTGTTTTGGATGATCACCACAATGTTCTCA
GAGCCCGTGAAGAGTGCCAAGGAAAGCGAGGCGTTTTGGAACGCGTTCGT
GATTGACCAGGGAAGTCAGGAGCTGGTACGATCCATTAGTAATGTGCGTC
GCGGCGTGTCGTCGGAAAAGGATCGTGTTGAATTGTTGGAACATGGCTTT
TATGCAATGCTGGCTGTTGTTCGATTCAACAGCTCTATGCGCAAGAGTCT
TATCGATTCGGGATGCATACAACATGTTCAGACGGCTCTGACGGATATAT
CGAACAACACGGTGACAGGGGTTCAGAATGTGGACAAGGTGATGATGACA
CATAAAGCTCGTCTTGGAACTGTGCTGTGCGATGTGATCAAGGAATTGGG
TGCGGATGGCAGTGGATATGCGTACATGCGGGAGCAAAATGTGAAACGGT
CGTTGGAAGACTTGATGAGCATGTATTCCGGGGACGGGACTTTTGCTCAC
TCATGTCGGGATGCGATCGCAATGTTGTCGTACTGA

protein sequence of Gcaud1750.t1

>Gcaud1750.t1 ID=Gcaud1750.t1|Name=Gcaud1750.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=262bp
MWMNEDNVQAFVACSPHADSGRGPPITQLIESMRAFAMRGRLFVVESSLS
ALAMIILYPRQRVQFIHRHGFKVFFETLQFHPCQSSTVSLVFWMITTMFS
EPVKSAKESEAFWNAFVIDQGSQELVRSISNVRRGVSSEKDRVELLEHGF
YAMLAVVRFNSSMRKSLIDSGCIQHVQTALTDISNNTVTGVQNVDKVMMT
HKARLGTVLCDVIKELGADGSGYAYMREQNVKRSLEDLMSMYSGDGTFAH
SCRDAIAMLSY*

mRNA from alignment at NODE_2120_length_6764_cov_4.274090:5963..6748-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1750.t1 ID=Gcaud1750.t1|Name=Gcaud1750.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=786bp|location=Sequence derived from alignment at NODE_2120_length_6764_cov_4.274090:5963..6748- (Gracilaria caudata M_176_S67 male)
ATGTGGATGAATGAAGATAATGTGCAGGCTTTCGTTGCATGTAGCCCTCA
CGCGGATAGTGGACGTGGACCGCCAATAACACAATTGATTGAGTCAATGC
GAGCGTTTGCAATGAGAGGACGGTTGTTTGTTGTGGAATCGAGTTTGTCA
GCTCTGGCAATGATCATTTTGTATCCCAGACAGCGGGTGCAATTCATCCA
CCGGCACGGTTTCAAGGTGTTCTTTGAGACGCTGCAGTTCCATCCGTGCC
AGTCATCAACAGTGTCGTTGGTGTTTTGGATGATCACCACAATGTTCTCA
GAGCCCGTGAAGAGTGCCAAGGAAAGCGAGGCGTTTTGGAACGCGTTCGT
GATTGACCAGGGAAGTCAGGAGCTGGTACGATCCATTAGTAATGTGCGTC
GCGGCGTGTCGTCGGAAAAGGATCGTGTTGAATTGTTGGAACATGGCTTT
TATGCAATGCTGGCTGTTGTTCGATTCAACAGCTCTATGCGCAAGAGTCT
TATCGATTCGGGATGCATACAACATGTTCAGACGGCTCTGACGGATATAT
CGAACAACACGGTGACAGGGGTTCAGAATGTGGACAAGGTGATGATGACA
CATAAAGCTCGTCTTGGAACTGTGCTGTGCGATGTGATCAAGGAATTGGG
TGCGGATGGCAGTGGATATGCGTACATGCGGGAGCAAAATGTGAAACGGT
CGTTGGAAGACTTGATGAGCATGTATTCCGGGGACGGGACTTTTGCTCAC
TCATGTCGGGATGCGATCGCAATGTTGTCGTACTGA

Coding sequence (CDS) from alignment at NODE_2120_length_6764_cov_4.274090:5963..6748-

>Gcaud1750.t1 ID=Gcaud1750.t1|Name=Gcaud1750.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=786bp|location=Sequence derived from alignment at NODE_2120_length_6764_cov_4.274090:5963..6748- (Gracilaria caudata M_176_S67 male)
ATGTGGATGAATGAAGATAATGTGCAGGCTTTCGTTGCATGTAGCCCTCA
CGCGGATAGTGGACGTGGACCGCCAATAACACAATTGATTGAGTCAATGC
GAGCGTTTGCAATGAGAGGACGGTTGTTTGTTGTGGAATCGAGTTTGTCA
GCTCTGGCAATGATCATTTTGTATCCCAGACAGCGGGTGCAATTCATCCA
CCGGCACGGTTTCAAGGTGTTCTTTGAGACGCTGCAGTTCCATCCGTGCC
AGTCATCAACAGTGTCGTTGGTGTTTTGGATGATCACCACAATGTTCTCA
GAGCCCGTGAAGAGTGCCAAGGAAAGCGAGGCGTTTTGGAACGCGTTCGT
GATTGACCAGGGAAGTCAGGAGCTGGTACGATCCATTAGTAATGTGCGTC
GCGGCGTGTCGTCGGAAAAGGATCGTGTTGAATTGTTGGAACATGGCTTT
TATGCAATGCTGGCTGTTGTTCGATTCAACAGCTCTATGCGCAAGAGTCT
TATCGATTCGGGATGCATACAACATGTTCAGACGGCTCTGACGGATATAT
CGAACAACACGGTGACAGGGGTTCAGAATGTGGACAAGGTGATGATGACA
CATAAAGCTCGTCTTGGAACTGTGCTGTGCGATGTGATCAAGGAATTGGG
TGCGGATGGCAGTGGATATGCGTACATGCGGGAGCAAAATGTGAAACGGT
CGTTGGAAGACTTGATGAGCATGTATTCCGGGGACGGGACTTTTGCTCAC
TCATGTCGGGATGCGATCGCAATGTTGTCGTACTGA