Gcaud8095.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8095.t1
Unique NameGcaud8095.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length145
Homology
BLAST of Gcaud8095.t1 vs. uniprot
Match: A0A2V3J578_9FLOR (DNA-directed RNA polymerase II subunit RPB7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J578_9FLOR)

HSP 1 Score: 259 bits (662), Expect = 3.760e-87
Identity = 129/144 (89.58%), Postives = 135/144 (93.75%), Query Frame = 0
Query:    1 MIEVEGTFAGRFGFIVAVLKVEGDIPVAELDDSTGFAIFPLAYQAVVFRPFKGEVLDSVVTKVTEHGFFAECGPLTVFVSHYSLPSDMTYENKEAKEPMWKGSEAEDDIQKDTSVRLRIIGLKIEATEISATATIQDPYLGRLD 144
            M+EVEGTFAGRFGFIVAVLKVEGDIPVAELDD+TGFA+FPLAYQAVVFRPFKGEVLDSVVTKVTEHGFFAECGPLTVFVSHYS+PSDM Y+  +  EP WKGSE EDDI KD SVRLRIIGLKIEATEISATATIQDPYLGRLD
Sbjct:    1 MLEVEGTFAGRFGFIVAVLKVEGDIPVAELDDNTGFAVFPLAYQAVVFRPFKGEVLDSVVTKVTEHGFFAECGPLTVFVSHYSIPSDMNYKFID-DEPTWKGSEPEDDIVKDVSVRLRIIGLKIEATEISATATIQDPYLGRLD 143          
BLAST of Gcaud8095.t1 vs. uniprot
Match: A0A1X6NKR0_PORUM (S1 motif domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NKR0_PORUM)

HSP 1 Score: 181 bits (458), Expect = 1.140e-55
Identity = 87/144 (60.42%), Postives = 111/144 (77.08%), Query Frame = 0
Query:    1 MIEVEGTFAGRFGFIVAVLKVEGDIPVAELDDSTGFAIFPLAYQAVVFRPFKGEVLDSVVTKVTEHGFFAECGPLTVFVSHYSLPSDMTYENKEAKEPMWKGSEAEDDIQKDTSVRLRIIGLKIEATEISATATIQDPYLGRLD 144
            M EVEG+FAGR GF++ V+ +   IP  ELD +TGFA+FPL Y+A+VFRPFKGEVLDSVV KVT+HGFFA+ GPL +FVSH+ LP DM Y+   A+   W+  +  D I +D SVRLRI+GLKIEATEISAT +++D YLG ++
Sbjct:   31 MQEVEGSFAGRHGFVIMVVHLHEPIPHGELDHTTGFAVFPLKYKALVFRPFKGEVLDSVVDKVTQHGFFADAGPLKIFVSHHLLPQDMGYD---AQAECWRSVDGGDLIARDASVRLRILGLKIEATEISATGSVRDDYLGTVE 171          
BLAST of Gcaud8095.t1 vs. uniprot
Match: A0A7S3E9R3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E9R3_9RHOD)

HSP 1 Score: 166 bits (420), Expect = 1.460e-49
Identity = 77/141 (54.61%), Postives = 104/141 (73.76%), Query Frame = 0
Query:    1 MIEVEGTFAGRFGFIVAVLKVEGDIPVAELDDSTGFAIFPLAYQAVVFRPFKGEVLDSVVTKVTEHGFFAECGPLTVFVSHYSLPSDMTYENKEAKEPMWKGSEAEDDIQKDTSVRLRIIGLKIEATEISATATIQDPYLG 141
            +++VEG FAGR GFIV V K+E  IPV E+D STGFA+FP+ Y A+VFRPF+GEVLDS+VT+V  HGF A  GPL +FVSH+ LPSDM Y+ +      W      D I+  T+VRL++IGLK+EAT++ AT ++++ +LG
Sbjct:   51 LLQVEGQFAGRHGFIVIVQKIEEPIPVGEIDSSTGFAVFPIKYHALVFRPFRGEVLDSIVTRVLPHGFLASAGPLDIFVSHHCLPSDMKYDQQGE---CWVSINQADKIETKTAVRLKLIGLKVEATKMHATGSMKEDFLG 188          
BLAST of Gcaud8095.t1 vs. uniprot
Match: A0A7S1ERI9_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ERI9_9RHOD)

HSP 1 Score: 164 bits (414), Expect = 5.350e-49
Identity = 75/139 (53.96%), Postives = 105/139 (75.54%), Query Frame = 0
Query:    3 EVEGTFAGRFGFIVAVLKVEGDIPVAELDDSTGFAIFPLAYQAVVFRPFKGEVLDSVVTKVTEHGFFAECGPLTVFVSHYSLPSDMTYENKEAKEPMWKGSEAEDDIQKDTSVRLRIIGLKIEATEISATATIQDPYLG 141
            +VEG FAG  GF+VAV+ +   +P  +LDD TGFAIFP+ Y A+V+RPFK EV+D++V++VT+HGFFAE GPLT+FVSH+ +P DM Y++       +  ++  + I +DT VRL+IIGLKIE T+ISAT +++D YLG
Sbjct:   33 DVEGKFAGGNGFVVAVINLVHGVPSGQLDDGTGFAIFPVTYNAIVYRPFKNEVVDAIVSRVTQHGFFAEAGPLTIFVSHHLIPEDMAYQSMPEG---FVSTDQGETITRDTKVRLKIIGLKIEVTDISATGSMRDDYLG 168          
BLAST of Gcaud8095.t1 vs. uniprot
Match: A0A7S3E9V8_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E9V8_9RHOD)

HSP 1 Score: 166 bits (420), Expect = 8.030e-49
Identity = 78/139 (56.12%), Postives = 102/139 (73.38%), Query Frame = 0
Query:    3 EVEGTFAGRFGFIVAVLKVEGDIPVAELDDSTGFAIFPLAYQAVVFRPFKGEVLDSVVTKVTEHGFFAECGPLTVFVSHYSLPSDMTYENKEAKEPMWKGSEAEDDIQKDTSVRLRIIGLKIEATEISATATIQDPYLG 141
            EVEG FAGR GFIV V K+E  IPV E+D STGFA+FP+ Y A+VFRPF+GEVLDS+VT+V  HGF A  GPL +FVSH+ LPSDM Y+ +      W      D I+  T+VRL++IGLK+EAT++ AT ++++ +LG
Sbjct:  111 EVEGQFAGRHGFIVIVQKIEEPIPVGEIDSSTGFAVFPIKYHALVFRPFRGEVLDSIVTRVLPHGFLASAGPLDIFVSHHCLPSDMKYDQQGE---CWVSINQADKIETKTAVRLKLIGLKVEATKMHATGSMKEDFLG 246          
BLAST of Gcaud8095.t1 vs. uniprot
Match: A0A7S0BQA4_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BQA4_9RHOD)

HSP 1 Score: 162 bits (409), Expect = 3.810e-48
Identity = 77/139 (55.40%), Postives = 101/139 (72.66%), Query Frame = 0
Query:    3 EVEGTFAGRFGFIVAVLKVEGDIPVAELDDSTGFAIFPLAYQAVVFRPFKGEVLDSVVTKVTEHGFFAECGPLTVFVSHYSLPSDMTYENKEAKEPMWKGSEAEDDIQKDTSVRLRIIGLKIEATEISATATIQDPYLG 141
            EVEG FAGR GFIV V K+E  IPV E+D STGFA+FP+ Y A+VFRPF+GEVLDS+VT+V   GF A  GPL +FVSH+ LPSDM Y+ +      W      D I+  T+VRL++IGLK+EAT++ AT ++++ +LG
Sbjct:   34 EVEGQFAGRHGFIVIVQKIEEPIPVGEIDSSTGFAVFPIKYHALVFRPFRGEVLDSIVTRVLPLGFLASAGPLDIFVSHHCLPSDMKYDQQGE---CWVSINQADKIENKTAVRLKLIGLKVEATKMLATGSMKEDFLG 169          
BLAST of Gcaud8095.t1 vs. uniprot
Match: M2WSF9_GALSU (DNA-directed RNA polymerase II subunit G n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WSF9_GALSU)

HSP 1 Score: 155 bits (392), Expect = 1.240e-45
Identity = 75/144 (52.08%), Postives = 105/144 (72.92%), Query Frame = 0
Query:    1 MIEVEGTFAGRFGFIVAVLKVEGDIPVAELDDSTGFAIFPLAYQAVVFRPFKGEVLDSVVTKVTEHGFFAECGPLTVFVSHYSLPSDMTYENKEAKEPMWKGSEAEDDIQKDTSVRLRIIGLKIEATEISATATIQDPYLGRLD 144
            M EVEGT +GRFGF+V+VL+V   +P   L +  GFA++PL Y+A+VFRPFKGEVLD+VVT VT HG FA+ GPLT+FVS + +PSDMT++ + A        E  + IQ+D+++RLR+ G+KI+A+  +A  TI D YLG ++
Sbjct:   32 MDEVEGTVSGRFGFVVSVLEVLQPLPKGILREGFGFAVYPLKYKALVFRPFKGEVLDAVVTNVTRHGIFAQVGPLTIFVSRHQIPSDMTHDEETAS--YISVVEKAERIQRDSAIRLRVNGIKIDASSFTAVGTILDDYLGLIE 173          
BLAST of Gcaud8095.t1 vs. uniprot
Match: A0A443S954_9ACAR (DNA-directed RNA polymerase II subunit RPB7-like protein n=2 Tax=Parasitengona TaxID=83141 RepID=A0A443S954_9ACAR)

HSP 1 Score: 144 bits (364), Expect = 2.060e-41
Identity = 66/139 (47.48%), Postives = 101/139 (72.66%), Query Frame = 0
Query:    3 EVEGTFAGRFGFIVAVLKVEGDIPVAELDDSTGFAIFPLAYQAVVFRPFKGEVLDSVVTKVTEHGFFAECGPLTVFVSHYSLPSDMTYENKEAKEPMWKGSEAEDDIQKDTSVRLRIIGLKIEATEISATATIQDPYLG 141
            EVEGT +G++GF++AV  ++  I    + +STGF ++P+ Y+A+VFRPFKGEVLDS+VT+V + G F E GPL+ F+S +S+P+DM +E  ++  P +K  + E  IQ D  +RL+I+GL+++AT+I A  T+ D YLG
Sbjct:   33 EVEGTCSGKYGFVIAVTTIDS-IGSGLIQNSTGFVVYPIKYKAIVFRPFKGEVLDSIVTQVNKVGIFTEIGPLSCFISRHSIPADMQFE-ADSNPPCYKTPDEEVVIQPDNEIRLKIVGLRVDATDIFAIGTLMDDYLG 169          
BLAST of Gcaud8095.t1 vs. uniprot
Match: A9TN64_PHYPA (Predicted protein n=3 Tax=Embryophyta TaxID=3193 RepID=A9TN64_PHYPA)

HSP 1 Score: 144 bits (363), Expect = 3.490e-41
Identity = 71/139 (51.08%), Postives = 98/139 (70.50%), Query Frame = 0
Query:    3 EVEGTFAGRFGFIVAVLKVEGDIPVAELDDSTGFAIFPLAYQAVVFRPFKGEVLDSVVTKVTEHGFFAECGPLTVFVSHYSLPSDMTYENKEAKEPMWKGSEAEDDIQKDTSVRLRIIGLKIEATEISATATIQDPYLG 141
            +VEGT +GR GF+VAV  VE  I    + D TGF  FP+ YQ VVFRPFKGE+L+SVVT V + GFFAE GP+ +FVS++ +P DM +++ +   P +K S+    IQKD+ VRL+I+G +++ATEI    TI+D +LG
Sbjct:   33 DVEGTCSGRHGFVVAVTAVE-TIGSGLIRDGTGFVTFPVKYQCVVFRPFKGEILESVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMAFQSDDV--PNYKTSDGSVRIQKDSEVRLKIVGTRVDATEIFCIGTIKDDFLG 168          
BLAST of Gcaud8095.t1 vs. uniprot
Match: A0A5J4YKQ4_PORPP (DNA-directed RNA polymerase II subunit RPB7 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YKQ4_PORPP)

HSP 1 Score: 144 bits (364), Expect = 4.060e-41
Identity = 71/159 (44.65%), Postives = 104/159 (65.41%), Query Frame = 0
Query:    3 EVEGTFAGRFGFIVAVLKVE--------------------GDIPVAELDDSTGFAIFPLAYQAVVFRPFKGEVLDSVVTKVTEHGFFAECGPLTVFVSHYSLPSDMTYENKEAKEPMWKGSEAEDDIQKDTSVRLRIIGLKIEATEISATATIQDPYLG 141
            +VEG F G +GF+VA+ +V+                     ++P  E+D ++G A+FP+ +QA+VFRPFKGE +D+ VT+VT+HGFFAE GPL +FVSH+ LP DM Y+ +  +        A D I+  + VRL+IIGLKIEATEI+AT ++++ +LG
Sbjct:   33 DVEGRFLGAYGFVVAITEVKCLGLRLLGNDGALGSGAARGSELPPGEIDSASGMAVFPVRFQALVFRPFKGECVDAHVTRVTQHGFFAESGPLIIFVSHHLLPEDMQYKTEGGEVRFQSRGNAYDVIKALSCVRLKIIGLKIEATEITATGSMREDFLG 191          
The following BLAST results are available for this feature:
BLAST of Gcaud8095.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J578_9FLOR3.760e-8789.58DNA-directed RNA polymerase II subunit RPB7 n=1 Ta... [more]
A0A1X6NKR0_PORUM1.140e-5560.42S1 motif domain-containing protein n=1 Tax=Porphyr... [more]
A0A7S3E9R3_9RHOD1.460e-4954.61Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S1ERI9_9RHOD5.350e-4953.96Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S3E9V8_9RHOD8.030e-4956.12Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S0BQA4_9RHOD3.810e-4855.40Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
M2WSF9_GALSU1.240e-4552.08DNA-directed RNA polymerase II subunit G n=1 Tax=G... [more]
A0A443S954_9ACAR2.060e-4147.48DNA-directed RNA polymerase II subunit RPB7-like p... [more]
A9TN64_PHYPA3.490e-4151.08Predicted protein n=3 Tax=Embryophyta TaxID=3193 R... [more]
A0A5J4YKQ4_PORPP4.060e-4144.65DNA-directed RNA polymerase II subunit RPB7 n=1 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilyGENE3D3.30.1490.120coord: 1..52
e-value: 1.7E-8
score: 36.6
NoneNo IPR availableGENE3D2.40.50.140coord: 53..143
e-value: 2.7E-30
score: 106.2
NoneNo IPR availablePANTHERPTHR12709:SF4DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7coord: 3..141
IPR003029S1 domainPFAMPF00575S1coord: 49..130
e-value: 2.3E-9
score: 37.5
IPR045113RNA polymerase subunit Rpb7-likePANTHERPTHR12709DNA-DIRECTED RNA POLYMERASE II, IIIcoord: 3..141
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 50..142

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_211_length_36859_cov_4.689676contigNODE_211_length_36859_cov_4.689676:20654..21088 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8095.t1Gcaud8095.t1Gracilaria caudata M_176_S67 malemRNANODE_211_length_36859_cov_4.689676 20654..21088 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8095.t1 ID=Gcaud8095.t1|Name=Gcaud8095.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=145bp
MIEVEGTFAGRFGFIVAVLKVEGDIPVAELDDSTGFAIFPLAYQAVVFRP
FKGEVLDSVVTKVTEHGFFAECGPLTVFVSHYSLPSDMTYENKEAKEPMW
KGSEAEDDIQKDTSVRLRIIGLKIEATEISATATIQDPYLGRLD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036898RNA_pol_Rpb7-like_N_sf
IPR003029S1_domain
IPR045113Rpb7-like
IPR012340NA-bd_OB-fold