Gcaud2382.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2382.t1
Unique Name	Gcaud2382.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	682

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2102_length_6852_cov_3.529360	contig	NODE_2102_length_6852_cov_3.529360:320..2365 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704089.1
PFAMs	SAPS
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15458,ko:K15499,ko:K15501
Evalue	8.34e-06
EggNOG OGs	KOG2073@1\|root,KOG2073@2759\|Eukaryota
Description	protein phosphatase binding
COG category	S
BRITE	ko00000,ko01009,ko03016,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2382	Gcaud2382	Gracilaria caudata M_176_S67 male	gene	NODE_2102_length_6852_cov_3.529360 320..2365 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2382.t1.start1	Gcaud2382.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2102_length_6852_cov_3.529360 320..322 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2382.t1.CDS1	Gcaud2382.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2102_length_6852_cov_3.529360 320..2365 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2382.t1.exon1	Gcaud2382.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2102_length_6852_cov_3.529360 320..2365 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2382.t1.stop1	Gcaud2382.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2102_length_6852_cov_3.529360 2363..2365 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2382.t1	Gcaud2382.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2102_length_6852_cov_3.529360 320..2365 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2102_length_6852_cov_3.529360:320..2365+
coding sequence from alignment at NODE_2102_length_6852_cov_3.529360:320..2365+

mRNA sequence

>Gcaud2382.t1 ID=Gcaud2382.t1|Name=Gcaud2382.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=682bp
LPSITVPPPSAPLTNVTRAQFLDVLHTFLQQQPEEPVADVDYEALVSQLR
LLFDHLDGLVEQLPMRTSNTVCDALAKPHMLTALLCLLSDVSARSSPVFR
DVRRAYRYPYITTTILANGTMNIREAFITSKPLVAHLLSFLDGRVPLLDF
VPNSGAETTSATQLACQNPIIVGNVVQILVSYLGTNPETLLEQIRERHTL
IPALVDMLHIGSVPQLLADLIPDRCVDDVLMMDHRNASFDDSMTNAISML
ASCRIFHLLANAFVGATQTIYDNCASDASSPTMEEVHRAEQMAYNVTEVY
TNLVKKTLRAVRINADIPACQYLHVFGTASTTSTIELILNSGIELFRETE
LTKTTILENALSLTTQLLELVEEDAERRVASVTGQPPPLDTSALENALKP
ILRSLIGVLIDIVHRNDGQSGVRLRILELFVTCMRVCSEDLMRYIDKTRF
GEVALRIMMMHPRCSLIQHVVCRGVETGLVSPKATLTSVSHWLKRCNLPQ
VIMHLWRSHEGDARWVLPRMAQEAPYLSALVHLACCTQHFFAMHDDEMGS
TPDVSVAEETRQRFEEFFQSTFTSIVSHESTLCGPKPRRRQAMPSGAMGR
AFGVMSRSASCSSGFGRRSGVNNSGGTAHLVRSASAHRFGYVAPVSSLRS
RFDEVFVEGGDGDFEAVTSFSGFGDDDDLLG*

spliced messenger RNA

>Gcaud2382.t1 ID=Gcaud2382.t1|Name=Gcaud2382.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2046bp|location=Sequence derived from alignment at NODE_2102_length_6852_cov_3.529360:320..2365+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCCGTCCATCACCGTGCCGCCACCCTCCGCGCCGCTGACCAACGTCAC
TCGTGCCCAATTCCTCGACGTGCTGCACACTTTTCTGCAACAACAGCCGG
AAGAACCGGTTGCCGACGTTGATTACGAGGCTCTTGTCTCCCAATTACGC
CTGCTGTTCGACCATCTCGACGGCTTGGTTGAGCAACTGCCAATGCGCAC
CAGCAACACCGTGTGCGATGCGCTGGCAAAACCACACATGCTCACCGCGC
TGTTGTGTCTGCTCTCCGACGTTTCCGCAAGGTCCTCGCCTGTTTTTCGA
GACGTGCGCCGCGCGTATCGCTATCCGTACATAACTACTACCATCCTTGC
CAACGGAACCATGAACATTCGAGAGGCCTTCATTACCTCCAAGCCGCTTG
TGGCGCATTTACTGTCTTTTCTGGATGGTAGAGTACCACTGCTTGACTTT
GTGCCGAACTCGGGAGCGGAGACAACCTCCGCGACGCAGCTGGCTTGTCA
GAACCCAATAATTGTGGGTAACGTTGTGCAAATTCTGGTATCTTATCTGG
GGACAAACCCGGAGACACTGTTGGAGCAGATTCGAGAGCGGCACACTCTC
ATTCCCGCGCTGGTTGACATGTTGCACATCGGCTCCGTTCCGCAGCTTTT
GGCCGATTTAATTCCCGATCGCTGCGTTGATGATGTGCTGATGATGGATC
ATCGCAACGCGTCTTTTGACGACTCAATGACCAATGCTATTAGTATGCTC
GCTTCGTGTCGCATCTTTCACTTGCTGGCGAACGCGTTCGTGGGGGCCAC
GCAAACCATCTACGACAATTGTGCGAGCGATGCGAGCTCGCCGACTATGG
AGGAAGTGCACAGGGCAGAGCAGATGGCGTATAATGTTACTGAAGTGTAT
ACTAATCTTGTGAAGAAGACGCTGCGCGCAGTTCGCATCAATGCGGACAT
TCCAGCGTGCCAATATCTGCATGTTTTCGGAACTGCGTCCACCACGTCCA
CCATAGAGCTGATTCTCAACTCTGGCATCGAGCTGTTCCGCGAGACGGAG
TTGACAAAGACAACTATATTGGAGAACGCGCTGTCTCTGACCACGCAGCT
GCTCGAATTGGTGGAAGAGGACGCGGAAAGAAGGGTGGCAAGCGTAACTG
GACAGCCGCCGCCGCTGGACACCAGCGCGTTGGAAAATGCGCTGAAGCCC
ATCCTGCGCAGCTTGATTGGCGTCTTGATCGACATTGTGCACCGGAACGA
CGGGCAGTCGGGAGTGCGGCTGCGTATCCTCGAATTGTTCGTGACGTGCA
TGCGCGTATGCAGCGAGGATTTGATGCGGTACATTGACAAGACGCGATTC
GGAGAGGTGGCGCTGAGAATCATGATGATGCATCCACGTTGCTCTCTGAT
CCAACATGTGGTGTGCCGCGGTGTTGAGACTGGACTTGTATCACCAAAAG
CTACGTTGACCTCTGTATCGCATTGGTTGAAGCGTTGTAATCTACCCCAA
GTTATCATGCACCTGTGGCGCAGCCATGAGGGTGACGCTCGCTGGGTGTT
GCCACGGATGGCGCAGGAGGCGCCGTATCTTTCCGCGCTGGTGCACCTGG
CGTGTTGCACGCAGCACTTCTTCGCGATGCACGACGACGAGATGGGCTCC
ACGCCGGATGTGTCGGTGGCGGAGGAGACTCGACAGCGGTTTGAGGAGTT
TTTTCAGAGCACGTTTACTTCGATCGTGTCGCACGAGTCGACGTTGTGTG
GCCCCAAGCCACGGCGTCGACAGGCGATGCCTTCTGGTGCGATGGGCAGG
GCGTTTGGAGTGATGTCGCGCTCGGCGTCCTGCAGCTCTGGTTTTGGGCG
GCGTTCCGGCGTGAACAACAGCGGTGGGACGGCGCATCTGGTTCGGTCGG
CTAGTGCGCATCGGTTTGGGTACGTGGCGCCGGTGTCCTCGCTGCGTAGC
CGCTTTGATGAGGTGTTTGTGGAAGGCGGAGATGGGGACTTTGAGGCCGT
GACGTCGTTTTCTGGATTTGGAGACGACGACGATCTACTTGGATGA

protein sequence of Gcaud2382.t1

>Gcaud2382.t1 ID=Gcaud2382.t1|Name=Gcaud2382.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=682bp
LPSITVPPPSAPLTNVTRAQFLDVLHTFLQQQPEEPVADVDYEALVSQLR
LLFDHLDGLVEQLPMRTSNTVCDALAKPHMLTALLCLLSDVSARSSPVFR
DVRRAYRYPYITTTILANGTMNIREAFITSKPLVAHLLSFLDGRVPLLDF
VPNSGAETTSATQLACQNPIIVGNVVQILVSYLGTNPETLLEQIRERHTL
IPALVDMLHIGSVPQLLADLIPDRCVDDVLMMDHRNASFDDSMTNAISML
ASCRIFHLLANAFVGATQTIYDNCASDASSPTMEEVHRAEQMAYNVTEVY
TNLVKKTLRAVRINADIPACQYLHVFGTASTTSTIELILNSGIELFRETE
LTKTTILENALSLTTQLLELVEEDAERRVASVTGQPPPLDTSALENALKP
ILRSLIGVLIDIVHRNDGQSGVRLRILELFVTCMRVCSEDLMRYIDKTRF
GEVALRIMMMHPRCSLIQHVVCRGVETGLVSPKATLTSVSHWLKRCNLPQ
VIMHLWRSHEGDARWVLPRMAQEAPYLSALVHLACCTQHFFAMHDDEMGS
TPDVSVAEETRQRFEEFFQSTFTSIVSHESTLCGPKPRRRQAMPSGAMGR
AFGVMSRSASCSSGFGRRSGVNNSGGTAHLVRSASAHRFGYVAPVSSLRS
RFDEVFVEGGDGDFEAVTSFSGFGDDDDLLG*

mRNA from alignment at NODE_2102_length_6852_cov_3.529360:320..2365+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2382.t1 ID=Gcaud2382.t1|Name=Gcaud2382.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2046bp|location=Sequence derived from alignment at NODE_2102_length_6852_cov_3.529360:320..2365+ (Gracilaria caudata M_176_S67 male)
CTGCCGTCCATCACCGTGCCGCCACCCTCCGCGCCGCTGACCAACGTCAC
TCGTGCCCAATTCCTCGACGTGCTGCACACTTTTCTGCAACAACAGCCGG
AAGAACCGGTTGCCGACGTTGATTACGAGGCTCTTGTCTCCCAATTACGC
CTGCTGTTCGACCATCTCGACGGCTTGGTTGAGCAACTGCCAATGCGCAC
CAGCAACACCGTGTGCGATGCGCTGGCAAAACCACACATGCTCACCGCGC
TGTTGTGTCTGCTCTCCGACGTTTCCGCAAGGTCCTCGCCTGTTTTTCGA
GACGTGCGCCGCGCGTATCGCTATCCGTACATAACTACTACCATCCTTGC
CAACGGAACCATGAACATTCGAGAGGCCTTCATTACCTCCAAGCCGCTTG
TGGCGCATTTACTGTCTTTTCTGGATGGTAGAGTACCACTGCTTGACTTT
GTGCCGAACTCGGGAGCGGAGACAACCTCCGCGACGCAGCTGGCTTGTCA
GAACCCAATAATTGTGGGTAACGTTGTGCAAATTCTGGTATCTTATCTGG
GGACAAACCCGGAGACACTGTTGGAGCAGATTCGAGAGCGGCACACTCTC
ATTCCCGCGCTGGTTGACATGTTGCACATCGGCTCCGTTCCGCAGCTTTT
GGCCGATTTAATTCCCGATCGCTGCGTTGATGATGTGCTGATGATGGATC
ATCGCAACGCGTCTTTTGACGACTCAATGACCAATGCTATTAGTATGCTC
GCTTCGTGTCGCATCTTTCACTTGCTGGCGAACGCGTTCGTGGGGGCCAC
GCAAACCATCTACGACAATTGTGCGAGCGATGCGAGCTCGCCGACTATGG
AGGAAGTGCACAGGGCAGAGCAGATGGCGTATAATGTTACTGAAGTGTAT
ACTAATCTTGTGAAGAAGACGCTGCGCGCAGTTCGCATCAATGCGGACAT
TCCAGCGTGCCAATATCTGCATGTTTTCGGAACTGCGTCCACCACGTCCA
CCATAGAGCTGATTCTCAACTCTGGCATCGAGCTGTTCCGCGAGACGGAG
TTGACAAAGACAACTATATTGGAGAACGCGCTGTCTCTGACCACGCAGCT
GCTCGAATTGGTGGAAGAGGACGCGGAAAGAAGGGTGGCAAGCGTAACTG
GACAGCCGCCGCCGCTGGACACCAGCGCGTTGGAAAATGCGCTGAAGCCC
ATCCTGCGCAGCTTGATTGGCGTCTTGATCGACATTGTGCACCGGAACGA
CGGGCAGTCGGGAGTGCGGCTGCGTATCCTCGAATTGTTCGTGACGTGCA
TGCGCGTATGCAGCGAGGATTTGATGCGGTACATTGACAAGACGCGATTC
GGAGAGGTGGCGCTGAGAATCATGATGATGCATCCACGTTGCTCTCTGAT
CCAACATGTGGTGTGCCGCGGTGTTGAGACTGGACTTGTATCACCAAAAG
CTACGTTGACCTCTGTATCGCATTGGTTGAAGCGTTGTAATCTACCCCAA
GTTATCATGCACCTGTGGCGCAGCCATGAGGGTGACGCTCGCTGGGTGTT
GCCACGGATGGCGCAGGAGGCGCCGTATCTTTCCGCGCTGGTGCACCTGG
CGTGTTGCACGCAGCACTTCTTCGCGATGCACGACGACGAGATGGGCTCC
ACGCCGGATGTGTCGGTGGCGGAGGAGACTCGACAGCGGTTTGAGGAGTT
TTTTCAGAGCACGTTTACTTCGATCGTGTCGCACGAGTCGACGTTGTGTG
GCCCCAAGCCACGGCGTCGACAGGCGATGCCTTCTGGTGCGATGGGCAGG
GCGTTTGGAGTGATGTCGCGCTCGGCGTCCTGCAGCTCTGGTTTTGGGCG
GCGTTCCGGCGTGAACAACAGCGGTGGGACGGCGCATCTGGTTCGGTCGG
CTAGTGCGCATCGGTTTGGGTACGTGGCGCCGGTGTCCTCGCTGCGTAGC
CGCTTTGATGAGGTGTTTGTGGAAGGCGGAGATGGGGACTTTGAGGCCGT
GACGTCGTTTTCTGGATTTGGAGACGACGACGATCTACTTGGATGA

Coding sequence (CDS) from alignment at NODE_2102_length_6852_cov_3.529360:320..2365+

>Gcaud2382.t1 ID=Gcaud2382.t1|Name=Gcaud2382.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2046bp|location=Sequence derived from alignment at NODE_2102_length_6852_cov_3.529360:320..2365+ (Gracilaria caudata M_176_S67 male)
CTGCCGTCCATCACCGTGCCGCCACCCTCCGCGCCGCTGACCAACGTCAC
TCGTGCCCAATTCCTCGACGTGCTGCACACTTTTCTGCAACAACAGCCGG
AAGAACCGGTTGCCGACGTTGATTACGAGGCTCTTGTCTCCCAATTACGC
CTGCTGTTCGACCATCTCGACGGCTTGGTTGAGCAACTGCCAATGCGCAC
CAGCAACACCGTGTGCGATGCGCTGGCAAAACCACACATGCTCACCGCGC
TGTTGTGTCTGCTCTCCGACGTTTCCGCAAGGTCCTCGCCTGTTTTTCGA
GACGTGCGCCGCGCGTATCGCTATCCGTACATAACTACTACCATCCTTGC
CAACGGAACCATGAACATTCGAGAGGCCTTCATTACCTCCAAGCCGCTTG
TGGCGCATTTACTGTCTTTTCTGGATGGTAGAGTACCACTGCTTGACTTT
GTGCCGAACTCGGGAGCGGAGACAACCTCCGCGACGCAGCTGGCTTGTCA
GAACCCAATAATTGTGGGTAACGTTGTGCAAATTCTGGTATCTTATCTGG
GGACAAACCCGGAGACACTGTTGGAGCAGATTCGAGAGCGGCACACTCTC
ATTCCCGCGCTGGTTGACATGTTGCACATCGGCTCCGTTCCGCAGCTTTT
GGCCGATTTAATTCCCGATCGCTGCGTTGATGATGTGCTGATGATGGATC
ATCGCAACGCGTCTTTTGACGACTCAATGACCAATGCTATTAGTATGCTC
GCTTCGTGTCGCATCTTTCACTTGCTGGCGAACGCGTTCGTGGGGGCCAC
GCAAACCATCTACGACAATTGTGCGAGCGATGCGAGCTCGCCGACTATGG
AGGAAGTGCACAGGGCAGAGCAGATGGCGTATAATGTTACTGAAGTGTAT
ACTAATCTTGTGAAGAAGACGCTGCGCGCAGTTCGCATCAATGCGGACAT
TCCAGCGTGCCAATATCTGCATGTTTTCGGAACTGCGTCCACCACGTCCA
CCATAGAGCTGATTCTCAACTCTGGCATCGAGCTGTTCCGCGAGACGGAG
TTGACAAAGACAACTATATTGGAGAACGCGCTGTCTCTGACCACGCAGCT
GCTCGAATTGGTGGAAGAGGACGCGGAAAGAAGGGTGGCAAGCGTAACTG
GACAGCCGCCGCCGCTGGACACCAGCGCGTTGGAAAATGCGCTGAAGCCC
ATCCTGCGCAGCTTGATTGGCGTCTTGATCGACATTGTGCACCGGAACGA
CGGGCAGTCGGGAGTGCGGCTGCGTATCCTCGAATTGTTCGTGACGTGCA
TGCGCGTATGCAGCGAGGATTTGATGCGGTACATTGACAAGACGCGATTC
GGAGAGGTGGCGCTGAGAATCATGATGATGCATCCACGTTGCTCTCTGAT
CCAACATGTGGTGTGCCGCGGTGTTGAGACTGGACTTGTATCACCAAAAG
CTACGTTGACCTCTGTATCGCATTGGTTGAAGCGTTGTAATCTACCCCAA
GTTATCATGCACCTGTGGCGCAGCCATGAGGGTGACGCTCGCTGGGTGTT
GCCACGGATGGCGCAGGAGGCGCCGTATCTTTCCGCGCTGGTGCACCTGG
CGTGTTGCACGCAGCACTTCTTCGCGATGCACGACGACGAGATGGGCTCC
ACGCCGGATGTGTCGGTGGCGGAGGAGACTCGACAGCGGTTTGAGGAGTT
TTTTCAGAGCACGTTTACTTCGATCGTGTCGCACGAGTCGACGTTGTGTG
GCCCCAAGCCACGGCGTCGACAGGCGATGCCTTCTGGTGCGATGGGCAGG
GCGTTTGGAGTGATGTCGCGCTCGGCGTCCTGCAGCTCTGGTTTTGGGCG
GCGTTCCGGCGTGAACAACAGCGGTGGGACGGCGCATCTGGTTCGGTCGG
CTAGTGCGCATCGGTTTGGGTACGTGGCGCCGGTGTCCTCGCTGCGTAGC
CGCTTTGATGAGGTGTTTGTGGAAGGCGGAGATGGGGACTTTGAGGCCGT
GACGTCGTTTTCTGGATTTGGAGACGACGACGATCTACTTGGATGA