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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 7994.ENSAMXP00000018899 |
| Preferred name | CRNKL1 |
| PFAMs | HAT |
| Max annot lvl | 33208|Metazoa |
| KEGG ko | ko:K12869 |
| KEGG Pathway | ko03040,map03040 |
| KEGG Module | M00355 |
| GOs | GO:0000245,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0000974,GO:0001655,GO:0001742,GO:0002009,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006928,GO:0007272,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007438,GO:0007442,GO:0007443,GO:0008150,GO:0008152,GO:0008347,GO:0008366,GO:0008380,GO:0009653,GO:0009719,GO:0009790,GO:0009888,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016071,GO:0016477,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0021537,GO:0021543,GO:0021987,GO:0022008,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030900,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034097,GO:0034622,GO:0034641,GO:0035239,GO:0035295,GO:0040011,GO:0042063,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048024,GO:0048468,GO:0048513,GO:0048546,GO:0048565,GO:0048598,GO:0048619,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050684,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051252,GO:0051674,GO:0051716,GO:0055123,GO:0060255,GO:0060322,GO:0060429,GO:0060562,GO:0061326,GO:0061333,GO:0061525,GO:0065003,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071007,GO:0071010,GO:0071011,GO:0071012,GO:0071013,GO:0071014,GO:0071310,GO:0071345,GO:0071363,GO:0071495,GO:0071704,GO:0071826,GO:0071840,GO:0072001,GO:0072002,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1903311,GO:1990089,GO:1990090,GO:1990416,GO:1990823,GO:1990830,GO:1990904 |
| Evalue | 3.05e-92 |
| EggNOG OGs | KOG1915@1|root,KOG1915@2759|Eukaryota,38FN1@33154|Opisthokonta,3BEIY@33208|Metazoa,3CVXY@33213|Bilateria,48780@7711|Chordata,493Y2@7742|Vertebrata,49ZUP@7898|Actinopterygii |
| Description | Crooked neck pre-mRNA splicing factor-like 1 (Drosophila) |
| COG category | D |
| BRITE | ko00000,ko00001,ko00002,ko03036,ko03041 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1852.t1.start1 | Gcaud1852.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_207_length_37223_cov_4.468356 34064..34066 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1852.t1.stop1 | Gcaud1852.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_207_length_37223_cov_4.468356 36390..36392 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1852.t1 ID=Gcaud1852.t1|Name=Gcaud1852.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=681bp MDEVPSHARAQSANRVKSKAPATIQITAEQLLREAWERKERSVPIPKQHI ADTEELLDYQRNERKQYEMRIVRNRSHTSLWIRYARWEEEQNEFVRARSI WERALDNDYRNPVIWLNYAEMEMRHRFINHARNVFDRAVALLPRVDQIWL KYAHMEEMLGQLNQARLVYDRWMKWLPESTAYFAFIRFELRHERIENARK VYELLVNVHPISHSYIKYARFEERHKQHARARHVYERASEQLSPSQLTPG FFFCFAKFEERLKEVQRARTIYLYATKKFSESDSPELHHAFTSFEKQHGD REALDSLLSSKKKRSYETVLAENPTDYDTWFDLLQLEELTSSTEHIRKTY ERAIVNLPPVASKPSWNRYVYLWISYAIWEELSCNDLQSAINVYKRCMAL IPKRHRKFSFGKLWIYYAQAEIRNKNLQAARRIFGTGLGVLPHKHVLYET YIAFEVSLGEFERVRKIYENWLTRNPIHEPGFLALADLELGLGEVERARL VLEIATSVDELKSSSTLWEKLADVVKLEDETFAVRRFEGYISSQSHAAVW LAYVYMMKELRAADEAVRRIFERSVNSLRDEAIAAKEKGTDLREEAYEMG NKWLSWEMDRPNALKDKSANLAHSRNSIPRRVKKTRQTEEGSEDYLEIVF PEEETTVGGIENCLPAVVKNTTDLLFGCVS* back to topspliced messenger RNA >Gcaud1852.t1 ID=Gcaud1852.t1|Name=Gcaud1852.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2043bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:34064..36392+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGATGAAGTTCCGTCCCATGCTCGAGCTCAAAGTGCGAACCGGGTGAA GAGCAAAGCTCCGGCCACGATTCAGATTACTGCGGAGCAGCTTTTACGCG AAGCATGGGAGCGCAAAGAGCGATCCGTCCCCATTCCCAAGCAACATATC GCGGACACCGAGGAATTACTGGACTACCAGAGAAATGAGCGCAAGCAGTA TGAAATGCGGATTGTTCGCAATCGCTCACACACTTCTCTATGGATTCGCT ACGCAAGATGGGAAGAAGAGCAAAACGAGTTTGTTCGCGCCCGTTCTATC TGGGAACGAGCTCTCGACAATGACTACCGCAATCCTGTTATATGGCTCAA TTATGCAGAAATGGAAATGCGGCATCGCTTCATAAATCATGCAAGAAACG TTTTCGACAGAGCTGTAGCCTTGTTACCGAGAGTGGACCAAATCTGGCTG AAGTATGCGCACATGGAGGAAATGCTGGGACAACTCAATCAAGCCCGATT GGTGTACGACCGCTGGATGAAGTGGCTTCCAGAATCTACTGCCTATTTTG CTTTCATTCGCTTCGAGCTTCGTCATGAGCGTATTGAAAACGCTAGAAAG GTTTATGAATTACTTGTAAACGTACATCCAATATCACATTCTTACATCAA GTATGCAAGGTTCGAGGAGCGACACAAGCAACATGCCCGTGCTCGCCATG TGTACGAGCGCGCAAGTGAGCAGCTCTCACCTTCACAGTTAACACCAGGT TTCTTTTTCTGTTTTGCAAAGTTTGAAGAACGTCTCAAAGAAGTCCAGCG AGCGAGGACTATATATCTGTATGCTACAAAAAAGTTTTCTGAATCCGACT CTCCAGAATTGCATCACGCTTTCACCAGCTTTGAAAAGCAGCATGGTGAT AGAGAGGCACTAGACAGCTTATTGTCCTCGAAGAAGAAAAGATCATATGA AACTGTCCTCGCTGAAAACCCTACGGACTACGATACTTGGTTTGATCTAC TTCAACTCGAAGAATTGACTTCATCAACGGAACATATTCGAAAAACTTAT GAACGCGCAATTGTCAACTTACCCCCAGTTGCTTCCAAGCCATCGTGGAA TAGATATGTTTATCTTTGGATTTCTTATGCTATTTGGGAGGAGCTCTCTT GCAATGATCTGCAATCGGCTATCAACGTATACAAGCGATGTATGGCTTTG ATACCTAAGCGCCATCGTAAGTTTTCATTTGGGAAGCTTTGGATCTATTA TGCTCAAGCCGAAATACGGAACAAGAATCTGCAGGCAGCACGCAGGATAT TTGGTACCGGACTTGGTGTACTTCCTCACAAGCATGTTTTGTATGAAACA TACATCGCATTCGAAGTTTCCCTCGGAGAATTTGAACGAGTTCGAAAGAT TTATGAAAACTGGCTGACGAGAAATCCGATTCATGAACCTGGCTTTCTTG CACTAGCGGACTTAGAGCTTGGGCTTGGAGAAGTCGAGAGAGCGAGACTG GTGCTTGAAATTGCCACTTCCGTGGATGAATTAAAGTCATCGTCAACGTT ATGGGAGAAGCTAGCTGATGTGGTAAAACTTGAGGATGAAACCTTTGCTG TCAGGCGCTTTGAGGGGTACATTAGCAGCCAATCTCACGCAGCCGTATGG CTTGCATACGTTTACATGATGAAAGAGTTGCGGGCGGCAGATGAAGCTGT GCGACGAATCTTCGAAAGGAGTGTAAATTCTCTAAGAGATGAAGCTATCG CTGCAAAAGAGAAGGGTACAGATCTCCGCGAAGAAGCTTATGAAATGGGA AACAAATGGTTGTCGTGGGAGATGGACAGACCGAATGCACTGAAGGACAA GAGCGCAAATCTAGCACATTCGAGGAATTCAATTCCGAGAAGAGTGAAGA AAACACGACAGACCGAAGAAGGGAGTGAAGATTATTTGGAAATTGTTTTC CCTGAGGAAGAAACGACTGTTGGCGGCATCGAAAACTGCTTGCCAGCTGT GGTAAAGAATACGACCGACTTACTTTTTGGGTGTGTCTCTTAG back to topprotein sequence of Gcaud1852.t1 >Gcaud1852.t1 ID=Gcaud1852.t1|Name=Gcaud1852.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=681bp
MDEVPSHARAQSANRVKSKAPATIQITAEQLLREAWERKERSVPIPKQHI ADTEELLDYQRNERKQYEMRIVRNRSHTSLWIRYARWEEEQNEFVRARSI WERALDNDYRNPVIWLNYAEMEMRHRFINHARNVFDRAVALLPRVDQIWL KYAHMEEMLGQLNQARLVYDRWMKWLPESTAYFAFIRFELRHERIENARK VYELLVNVHPISHSYIKYARFEERHKQHARARHVYERASEQLSPSQLTPG FFFCFAKFEERLKEVQRARTIYLYATKKFSESDSPELHHAFTSFEKQHGD REALDSLLSSKKKRSYETVLAENPTDYDTWFDLLQLEELTSSTEHIRKTY ERAIVNLPPVASKPSWNRYVYLWISYAIWEELSCNDLQSAINVYKRCMAL IPKRHRKFSFGKLWIYYAQAEIRNKNLQAARRIFGTGLGVLPHKHVLYET YIAFEVSLGEFERVRKIYENWLTRNPIHEPGFLALADLELGLGEVERARL VLEIATSVDELKSSSTLWEKLADVVKLEDETFAVRRFEGYISSQSHAAVW LAYVYMMKELRAADEAVRRIFERSVNSLRDEAIAAKEKGTDLREEAYEMG NKWLSWEMDRPNALKDKSANLAHSRNSIPRRVKKTRQTEEGSEDYLEIVF PEEETTVGGIENCLPAVVKNTTDLLFGCVS* back to topmRNA from alignment at NODE_207_length_37223_cov_4.468356:34064..36392+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1852.t1 ID=Gcaud1852.t1|Name=Gcaud1852.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2329bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:34064..36392+ (Gracilaria caudata M_176_S67 male) ATGGATGAAGTTCCGTCCCATGCTCGAGCTCAAAGTGCGAACCGGGTGAA
GAGCAAAGCTCCGGCCACGATTCAGATTACTGCGGAGCAGCTTTTACGCG
AAGCATGGGAGCGCAAAGAGCGATCCGTCCCCATTCCCAAGCAACATATC
GCGGACACCGAGGAATTACTGGACTACCAGAGAAATGAGCGCAAGCAGTA
TGAAATGCGGATTGTTCGCAATCGCTCACACACTTCTCTATGGATTCGCT
ACGCAAGATGGGAAGAAGAGCAAAACGAGTTTGTTCGCGCCCGTTCTATC
TGGGAACGAGCTCTCGACAATGACTACCGCAATCCTGTTATATGGCTCAA
TTATGCAGAAATGGAAATGCGGCATCGCTTCATAAATCATGCAAGAAACG
TTTTCGACAGAGCTGTAGCCTTGTTACCGAGAGTGGACCAAATCTGGCTG
AAGTATGCGCACATGGAGGAAATGCTGGGACAACTCAATCAAGCCCGATT
GGTGTACGACCGCTGGATGAAGTGGCTTCCAGAATCTACTGCCTATTTTG
CTTTCATTCGCTTCGAGCTTCGTCATGAGCGTATTGAAAACGCTAGAAAG
GTTTATGAATTACTTGTAAACGTACATCCAATATCACATTCTTACATCAA
GTATGCAAGGTTCGAGGAGCGACACAAGCAACATGCCCGTGCTCGCCATG
TGTACGAGCGCGCAAGTGAGCAGCTCTCACCTTCACAGTTAACACCAGGT
TTCTTTTTCTGTTTTGCAAAGTTTGAAGAACGTCTCAAAGAAGTCCAGCG
AGCGAGGACTATATATCTGTATGCTACAAAAAAGTTTTCTGAATCCGACT
CTCCAGAATTGCATCACGCTTTCACCAGCTTTGAAAAGCAGCATGGTGAT
AGAGAGGCACTAGACAGCTTATTGTCCTCGAAGAAGAAAAGATCATATGA
AACTGTCCTCGCTGAAAACCCTACGGACTACGATACTTGGTTTGATCTAC
TTCAACTCGAAGAATTGACTTCATCAACGGAACATATTCGAAAAACTTAT
GAACGCGCAATTGTCAACTTACCCCCAGTTGCTTCCAAGCCATCGTGGAA
TAGATATGTTTATCTTTGGATTTCTTATGCTATTTGGGAGGAGCTCTCTT
GCAATGATCTGCAATCGGCTATCAACGTATACAAGCGATGTATGGCTTTG
ATACCTAAGCGCCATCGTAAGTTTTCATTTGGGAAGCTTTGGATCTATTA
TGCTCAAGCCGAAATACGGAACAAGAATCTGCAGGCAGCACGCAGGATAT
TTGGTACCGGACTTGGTGTACTTCCTCACAAGCATGTTTTGTATGAAACA
TACATCGCATTCGAAGTTTCCCTCGGAGAATTTGAACGAGTTCGAAAGAT
TTATGAAAACTGGCTGACGAGAAATCCGATTCATGAACCTGGCTTTCTTG
CACTAGCGGACTTAGAGCTTGGGCTTGGAGAAGTCGAGAGAGCGAGACTG
GTGCTTGAAATTGCCACTTCCGTGGATGAATTAAAGTCATCGTCAACGTT
ATGGGAGAAGCTAGCTGATGTGGTAAAACTTGAGGATGAAACCTTTGCTG
TCAGGCGCTTTGAGGGGTACATTAGCAGCCAATCTCACGCAGCCGTATGG
CTTGCATACGTTTACATGATGAAAGAGTTGCGGGCGGCAGATGAAGCTGT
GCGACGAATCTTCGAAAGGAGTGTAAATTCTCTAAGAGATGAAGCTATCG
CTGCAAAAGAGAAGGGTACAGATCTCCGCGAAGAAGCTTATGAAATGGGA
AACAAATGGTTGTCGTGGGAGATGGACAGACCGAATGCACTGAAGGACAA
GAGCGCAAATCTAGCACATTCGAGGAATTCAATTCCGAGAAGAGTGAAGA
AAACACGACAGACCGAAGAAGGGAGTGAAGATTATTTGGAAATTGTTTTC
CCTGAGGAAGAAACGACTGTTGGCGGCATCGGTAACCTTCTGGAAGCTGC
ACGCCGATGGAAAAAACAACAGCAAAACGGATGAAAACAAACAACTGGAT
ACCAGGTATGGCTTCTGTAGAGCAGCTTCGCCCAAGGAGTGTTGATGTGT
GTATTGCATTGGTTGCTCACAGAAAACTGCTTGCCAGCTGTGGTAAAGAA
TACGACCGACTTGTGAGTCCCCGCAAATCTCCTCACGAATACAGACAGCT
CCTGAGCATCACTACCCTTGATTACACCGCAGTATTAACTTGGAATGATT
CTCCCCCTCGCTTTCCTTTGAGTGGCTCTTCTGGTTCCATATTGGGGCCT
CTGCTAGACTTTTTGGGTGTGTCTCTTAG back to topCoding sequence (CDS) from alignment at NODE_207_length_37223_cov_4.468356:34064..36392+ >Gcaud1852.t1 ID=Gcaud1852.t1|Name=Gcaud1852.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2043bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:34064..36392+ (Gracilaria caudata M_176_S67 male) ATGGATGAAGTTCCGTCCCATGCTCGAGCTCAAAGTGCGAACCGGGTGAA GAGCAAAGCTCCGGCCACGATTCAGATTACTGCGGAGCAGCTTTTACGCG AAGCATGGGAGCGCAAAGAGCGATCCGTCCCCATTCCCAAGCAACATATC GCGGACACCGAGGAATTACTGGACTACCAGAGAAATGAGCGCAAGCAGTA TGAAATGCGGATTGTTCGCAATCGCTCACACACTTCTCTATGGATTCGCT ACGCAAGATGGGAAGAAGAGCAAAACGAGTTTGTTCGCGCCCGTTCTATC TGGGAACGAGCTCTCGACAATGACTACCGCAATCCTGTTATATGGCTCAA TTATGCAGAAATGGAAATGCGGCATCGCTTCATAAATCATGCAAGAAACG TTTTCGACAGAGCTGTAGCCTTGTTACCGAGAGTGGACCAAATCTGGCTG AAGTATGCGCACATGGAGGAAATGCTGGGACAACTCAATCAAGCCCGATT GGTGTACGACCGCTGGATGAAGTGGCTTCCAGAATCTACTGCCTATTTTG CTTTCATTCGCTTCGAGCTTCGTCATGAGCGTATTGAAAACGCTAGAAAG GTTTATGAATTACTTGTAAACGTACATCCAATATCACATTCTTACATCAA GTATGCAAGGTTCGAGGAGCGACACAAGCAACATGCCCGTGCTCGCCATG TGTACGAGCGCGCAAGTGAGCAGCTCTCACCTTCACAGTTAACACCAGGT TTCTTTTTCTGTTTTGCAAAGTTTGAAGAACGTCTCAAAGAAGTCCAGCG AGCGAGGACTATATATCTGTATGCTACAAAAAAGTTTTCTGAATCCGACT CTCCAGAATTGCATCACGCTTTCACCAGCTTTGAAAAGCAGCATGGTGAT AGAGAGGCACTAGACAGCTTATTGTCCTCGAAGAAGAAAAGATCATATGA AACTGTCCTCGCTGAAAACCCTACGGACTACGATACTTGGTTTGATCTAC TTCAACTCGAAGAATTGACTTCATCAACGGAACATATTCGAAAAACTTAT GAACGCGCAATTGTCAACTTACCCCCAGTTGCTTCCAAGCCATCGTGGAA TAGATATGTTTATCTTTGGATTTCTTATGCTATTTGGGAGGAGCTCTCTT GCAATGATCTGCAATCGGCTATCAACGTATACAAGCGATGTATGGCTTTG ATACCTAAGCGCCATCGTAAGTTTTCATTTGGGAAGCTTTGGATCTATTA TGCTCAAGCCGAAATACGGAACAAGAATCTGCAGGCAGCACGCAGGATAT TTGGTACCGGACTTGGTGTACTTCCTCACAAGCATGTTTTGTATGAAACA TACATCGCATTCGAAGTTTCCCTCGGAGAATTTGAACGAGTTCGAAAGAT TTATGAAAACTGGCTGACGAGAAATCCGATTCATGAACCTGGCTTTCTTG CACTAGCGGACTTAGAGCTTGGGCTTGGAGAAGTCGAGAGAGCGAGACTG GTGCTTGAAATTGCCACTTCCGTGGATGAATTAAAGTCATCGTCAACGTT ATGGGAGAAGCTAGCTGATGTGGTAAAACTTGAGGATGAAACCTTTGCTG TCAGGCGCTTTGAGGGGTACATTAGCAGCCAATCTCACGCAGCCGTATGG CTTGCATACGTTTACATGATGAAAGAGTTGCGGGCGGCAGATGAAGCTGT GCGACGAATCTTCGAAAGGAGTGTAAATTCTCTAAGAGATGAAGCTATCG CTGCAAAAGAGAAGGGTACAGATCTCCGCGAAGAAGCTTATGAAATGGGA AACAAATGGTTGTCGTGGGAGATGGACAGACCGAATGCACTGAAGGACAA GAGCGCAAATCTAGCACATTCGAGGAATTCAATTCCGAGAAGAGTGAAGA AAACACGACAGACCGAAGAAGGGAGTGAAGATTATTTGGAAATTGTTTTC CCTGAGGAAGAAACGACTGTTGGCGGCATCGAAAACTGCTTGCCAGCTGT GGTAAAGAATACGACCGACTTACTTTTTGGGTGTGTCTCTTAG back to top
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