Gcaud1031.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1031.t1
Unique NameGcaud1031.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length142
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2077_length_6941_cov_4.766715contigNODE_2077_length_6941_cov_4.766715:4060..4485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1031Gcaud1031Gracilaria caudata M_176_S67 malegeneNODE_2077_length_6941_cov_4.766715 4060..4485 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1031.t1.start1Gcaud1031.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2077_length_6941_cov_4.766715 4060..4062 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1031.t1.CDS1Gcaud1031.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2077_length_6941_cov_4.766715 4060..4485 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1031.t1.exon1Gcaud1031.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2077_length_6941_cov_4.766715 4060..4485 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1031.t1.stop1Gcaud1031.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2077_length_6941_cov_4.766715 4483..4485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1031.t1Gcaud1031.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2077_length_6941_cov_4.766715 4060..4485 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1031.t1 ID=Gcaud1031.t1|Name=Gcaud1031.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=142bp
MAPLKEVASAPITGPMERGAKGVLKNSVPAIKVSKNSHGPLVPLGLQNSV
RFAKWPEHSLQAICKPVIKCMCQEVSQEDKTPAMNDACTDDQDIADDACD
ATDETRCFYRWWINEDNDICYNLARDCIPCMFENLDWKVAV*
back to top

spliced messenger RNA

>Gcaud1031.t1 ID=Gcaud1031.t1|Name=Gcaud1031.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=426bp|location=Sequence derived from alignment at NODE_2077_length_6941_cov_4.766715:4060..4485+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCCCTTGAAGGAGGTTGCCTCTGCACCCATTACTGGCCCCATGGA
GCGCGGTGCAAAAGGTGTACTGAAGAACTCCGTCCCGGCCATAAAGGTTT
CGAAAAACTCTCATGGTCCATTAGTTCCTCTCGGCCTTCAGAACTCCGTC
CGGTTTGCTAAATGGCCCGAACATTCTCTGCAAGCAATATGCAAACCTGT
GATCAAATGCATGTGTCAAGAGGTTTCCCAAGAAGACAAGACGCCAGCTA
TGAACGATGCTTGTACGGATGATCAAGACATTGCTGATGACGCTTGCGAC
GCTACGGATGAGACGAGATGCTTCTACAGGTGGTGGATAAACGAAGACAA
TGACATATGCTACAACCTGGCTCGCGATTGTATCCCATGCATGTTTGAGA
ATTTGGATTGGAAGGTAGCAGTTTAA
back to top

protein sequence of Gcaud1031.t1

>Gcaud1031.t1 ID=Gcaud1031.t1|Name=Gcaud1031.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=142bp
MAPLKEVASAPITGPMERGAKGVLKNSVPAIKVSKNSHGPLVPLGLQNSV
RFAKWPEHSLQAICKPVIKCMCQEVSQEDKTPAMNDACTDDQDIADDACD
ATDETRCFYRWWINEDNDICYNLARDCIPCMFENLDWKVAV*
back to top

mRNA from alignment at NODE_2077_length_6941_cov_4.766715:4060..4485+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1031.t1 ID=Gcaud1031.t1|Name=Gcaud1031.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=426bp|location=Sequence derived from alignment at NODE_2077_length_6941_cov_4.766715:4060..4485+ (Gracilaria caudata M_176_S67 male)
ATGGCCCCCTTGAAGGAGGTTGCCTCTGCACCCATTACTGGCCCCATGGA
GCGCGGTGCAAAAGGTGTACTGAAGAACTCCGTCCCGGCCATAAAGGTTT
CGAAAAACTCTCATGGTCCATTAGTTCCTCTCGGCCTTCAGAACTCCGTC
CGGTTTGCTAAATGGCCCGAACATTCTCTGCAAGCAATATGCAAACCTGT
GATCAAATGCATGTGTCAAGAGGTTTCCCAAGAAGACAAGACGCCAGCTA
TGAACGATGCTTGTACGGATGATCAAGACATTGCTGATGACGCTTGCGAC
GCTACGGATGAGACGAGATGCTTCTACAGGTGGTGGATAAACGAAGACAA
TGACATATGCTACAACCTGGCTCGCGATTGTATCCCATGCATGTTTGAGA
ATTTGGATTGGAAGGTAGCAGTTTAA
back to top

Coding sequence (CDS) from alignment at NODE_2077_length_6941_cov_4.766715:4060..4485+

>Gcaud1031.t1 ID=Gcaud1031.t1|Name=Gcaud1031.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=426bp|location=Sequence derived from alignment at NODE_2077_length_6941_cov_4.766715:4060..4485+ (Gracilaria caudata M_176_S67 male)
ATGGCCCCCTTGAAGGAGGTTGCCTCTGCACCCATTACTGGCCCCATGGA
GCGCGGTGCAAAAGGTGTACTGAAGAACTCCGTCCCGGCCATAAAGGTTT
CGAAAAACTCTCATGGTCCATTAGTTCCTCTCGGCCTTCAGAACTCCGTC
CGGTTTGCTAAATGGCCCGAACATTCTCTGCAAGCAATATGCAAACCTGT
GATCAAATGCATGTGTCAAGAGGTTTCCCAAGAAGACAAGACGCCAGCTA
TGAACGATGCTTGTACGGATGATCAAGACATTGCTGATGACGCTTGCGAC
GCTACGGATGAGACGAGATGCTTCTACAGGTGGTGGATAAACGAAGACAA
TGACATATGCTACAACCTGGCTCGCGATTGTATCCCATGCATGTTTGAGA
ATTTGGATTGGAAGGTAGCAGTTTAA
back to top