Gcaud2634.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2634.t1
Unique NameGcaud2634.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length303
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_205_length_37462_cov_4.544219contigNODE_205_length_37462_cov_4.544219:27552..28545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT058CT
PFAMsAICARFT_IMPCHas,AIRS,AIRS_C,Formyl_trans_N,GARS_A,GARS_C,GARS_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00026,RC00090,RC00166,RC00197,RC01100,RC01128
KEGG koko:K00601,ko:K11787,ko:K11788
KEGG ReactionR04144,R04208,R04325,R04326
KEGG Pathwayko00230,ko00670,ko01100,ko01110,ko01130,ko01523,map00230,map00670,map01100,map01110,map01130,map01523
KEGG ModuleM00048
Evalue5.02e-72
EggNOG OGsCOG0299@1|root,KOG3076@2759|Eukaryota
EC2.1.2.2,6.3.3.1,6.3.4.13
Descriptionphosphoribosylglycinamide formyltransferase activity
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2634Gcaud2634Gracilaria caudata M_176_S67 malegeneNODE_205_length_37462_cov_4.544219 27552..28545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2634.t1Gcaud2634.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_205_length_37462_cov_4.544219 27552..28545 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2634.t1.stop1Gcaud2634.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_205_length_37462_cov_4.544219 27552..27554 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2634.t1.CDS1Gcaud2634.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_205_length_37462_cov_4.544219 27552..27800 -
Gcaud2634.t1.CDS2Gcaud2634.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_205_length_37462_cov_4.544219 27886..28545 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2634.t1.exon1Gcaud2634.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_205_length_37462_cov_4.544219 27552..27800 -
Gcaud2634.t1.exon2Gcaud2634.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_205_length_37462_cov_4.544219 27886..28545 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2634.t1.intron1Gcaud2634.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_205_length_37462_cov_4.544219 27801..27885 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2634.t1.start1Gcaud2634.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_205_length_37462_cov_4.544219 28543..28545 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2634.t1 ID=Gcaud2634.t1|Name=Gcaud2634.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=303bp
MCFRGNVFLKCCELSAGIPSFVQTHRITILDNASFDNHNLEHGGIQANTC
NRKAPNYPFVSGKLNTKAHLRVAPLYVSVKCSVSKPPHNELMRIAVMVSG
GGRSLQNVCEQINNGQMKGCQVSLVVASKPSAGAIPRAEQFGVPTRVVRQ
KDFDGNVENFSEAISRLFDEFGIDLVVMAGWMHFYQIPSRYDGKVINIHP
SLIPSFCGKGYYGNRVHEAVIKFGAKITGCTVHLADNEYDHGPIIIQKAV
PVFDTDTTEELAARVFEKEKEALPEAIQLFVDDRLSIENGIVRIAGTKTQ
PH*
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spliced messenger RNA

>Gcaud2634.t1 ID=Gcaud2634.t1|Name=Gcaud2634.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=909bp|location=Sequence derived from alignment at NODE_205_length_37462_cov_4.544219:27552..28545- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTTTCCGAGGGAACGTTTTCCTGAAATGTTGTGAACTATCCGCTGG
CATTCCCTCGTTTGTCCAAACACATCGGATTACAATACTTGACAATGCCA
GCTTCGATAATCACAATCTGGAACATGGAGGTATCCAGGCAAATACTTGC
AATCGTAAAGCTCCCAACTATCCATTCGTTTCGGGCAAACTCAATACGAA
GGCTCATTTGAGGGTAGCACCTTTATATGTCTCAGTGAAATGCTCAGTAT
CGAAACCACCTCATAATGAACTGATGCGCATTGCGGTAATGGTTTCCGGC
GGTGGTCGGTCCTTGCAGAATGTCTGTGAGCAGATTAACAATGGCCAGAT
GAAGGGATGTCAAGTGAGTCTTGTTGTGGCGAGCAAACCATCCGCCGGTG
CTATTCCCCGTGCGGAACAATTTGGAGTCCCAACGCGTGTTGTTCGACAG
AAAGATTTTGACGGGAACGTAGAAAACTTTAGCGAAGCGATATCACGTTT
GTTCGATGAGTTTGGGATAGACCTTGTAGTGATGGCTGGTTGGATGCACT
TCTACCAAATTCCGTCGCGATATGATGGGAAAGTCATTAATATTCATCCC
AGTTTAATCCCTTCTTTCTGCGGAAAAGGGTACTATGGGAATCGTGTTCA
CGAAGCAGTTATCAAATTTGGAGCCAAAATAACCGGTTGTACGGTCCATT
TGGCAGATAATGAGTATGACCACGGACCCATTATTATTCAAAAAGCCGTT
CCAGTGTTCGATACCGATACGACTGAAGAACTAGCTGCACGAGTTTTCGA
GAAAGAGAAGGAAGCATTACCAGAGGCTATCCAACTGTTTGTTGATGATA
GACTTTCCATTGAGAACGGGATCGTTCGCATTGCGGGTACCAAGACACAA
CCACACTAA
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protein sequence of Gcaud2634.t1

>Gcaud2634.t1 ID=Gcaud2634.t1|Name=Gcaud2634.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=303bp
MCFRGNVFLKCCELSAGIPSFVQTHRITILDNASFDNHNLEHGGIQANTC
NRKAPNYPFVSGKLNTKAHLRVAPLYVSVKCSVSKPPHNELMRIAVMVSG
GGRSLQNVCEQINNGQMKGCQVSLVVASKPSAGAIPRAEQFGVPTRVVRQ
KDFDGNVENFSEAISRLFDEFGIDLVVMAGWMHFYQIPSRYDGKVINIHP
SLIPSFCGKGYYGNRVHEAVIKFGAKITGCTVHLADNEYDHGPIIIQKAV
PVFDTDTTEELAARVFEKEKEALPEAIQLFVDDRLSIENGIVRIAGTKTQ
PH*
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mRNA from alignment at NODE_205_length_37462_cov_4.544219:27552..28545-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2634.t1 ID=Gcaud2634.t1|Name=Gcaud2634.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=994bp|location=Sequence derived from alignment at NODE_205_length_37462_cov_4.544219:27552..28545- (Gracilaria caudata M_176_S67 male)
ATGTGTTTCCGAGGGAACGTTTTCCTGAAATGTTGTGAACTATCCGCTGG
CATTCCCTCGTTTGTCCAAACACATCGGATTACAATACTTGACAATGCCA
GCTTCGATAATCACAATCTGGAACATGGAGGTATCCAGGCAAATACTTGC
AATCGTAAAGCTCCCAACTATCCATTCGTTTCGGGCAAACTCAATACGAA
GGCTCATTTGAGGGTAGCACCTTTATATGTCTCAGTGAAATGCTCAGTAT
CGAAACCACCTCATAATGAACTGATGCGCATTGCGGTAATGGTTTCCGGC
GGTGGTCGGTCCTTGCAGAATGTCTGTGAGCAGATTAACAATGGCCAGAT
GAAGGGATGTCAAGTGAGTCTTGTTGTGGCGAGCAAACCATCCGCCGGTG
CTATTCCCCGTGCGGAACAATTTGGAGTCCCAACGCGTGTTGTTCGACAG
AAAGATTTTGACGGGAACGTAGAAAACTTTAGCGAAGCGATATCACGTTT
GTTCGATGAGTTTGGGATAGACCTTGTAGTGATGGCTGGTTGGATGCACT
TCTACCAAATTCCGTCGCGATATGATGGGAAAGTCATTAATATTCATCCC
AGTTTAATCCCTTCTTTCTGCGGAAAAGGGTACTATGGGAATCGTGTTCA
CGAAGCAGTTGTAAGTCGTAATGAAAAGTTCTTTTATACGCCTTCAATCC
CTTTGCTGCAGCCTAACGTTTCTTGACTTCTACAATCGACCACAGATCAA
ATTTGGAGCCAAAATAACCGGTTGTACGGTCCATTTGGCAGATAATGAGT
ATGACCACGGACCCATTATTATTCAAAAAGCCGTTCCAGTGTTCGATACC
GATACGACTGAAGAACTAGCTGCACGAGTTTTCGAGAAAGAGAAGGAAGC
ATTACCAGAGGCTATCCAACTGTTTGTTGATGATAGACTTTCCATTGAGA
ACGGGATCGTTCGCATTGCGGGTACCAAGACACAACCACACTAA
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Coding sequence (CDS) from alignment at NODE_205_length_37462_cov_4.544219:27552..28545-

>Gcaud2634.t1 ID=Gcaud2634.t1|Name=Gcaud2634.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=909bp|location=Sequence derived from alignment at NODE_205_length_37462_cov_4.544219:27552..28545- (Gracilaria caudata M_176_S67 male)
ATGTGTTTCCGAGGGAACGTTTTCCTGAAATGTTGTGAACTATCCGCTGG
CATTCCCTCGTTTGTCCAAACACATCGGATTACAATACTTGACAATGCCA
GCTTCGATAATCACAATCTGGAACATGGAGGTATCCAGGCAAATACTTGC
AATCGTAAAGCTCCCAACTATCCATTCGTTTCGGGCAAACTCAATACGAA
GGCTCATTTGAGGGTAGCACCTTTATATGTCTCAGTGAAATGCTCAGTAT
CGAAACCACCTCATAATGAACTGATGCGCATTGCGGTAATGGTTTCCGGC
GGTGGTCGGTCCTTGCAGAATGTCTGTGAGCAGATTAACAATGGCCAGAT
GAAGGGATGTCAAGTGAGTCTTGTTGTGGCGAGCAAACCATCCGCCGGTG
CTATTCCCCGTGCGGAACAATTTGGAGTCCCAACGCGTGTTGTTCGACAG
AAAGATTTTGACGGGAACGTAGAAAACTTTAGCGAAGCGATATCACGTTT
GTTCGATGAGTTTGGGATAGACCTTGTAGTGATGGCTGGTTGGATGCACT
TCTACCAAATTCCGTCGCGATATGATGGGAAAGTCATTAATATTCATCCC
AGTTTAATCCCTTCTTTCTGCGGAAAAGGGTACTATGGGAATCGTGTTCA
CGAAGCAGTTATCAAATTTGGAGCCAAAATAACCGGTTGTACGGTCCATT
TGGCAGATAATGAGTATGACCACGGACCCATTATTATTCAAAAAGCCGTT
CCAGTGTTCGATACCGATACGACTGAAGAACTAGCTGCACGAGTTTTCGA
GAAAGAGAAGGAAGCATTACCAGAGGCTATCCAACTGTTTGTTGATGATA
GACTTTCCATTGAGAACGGGATCGTTCGCATTGCGGGTACCAAGACACAA
CCACACTAA
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