Gcaud3154.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3154.t1
Unique NameGcaud3154.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length163
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2057_length_7025_cov_4.195991contigNODE_2057_length_7025_cov_4.195991:2707..3250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3154Gcaud3154Gracilaria caudata M_176_S67 malegeneNODE_2057_length_7025_cov_4.195991 2707..3250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3154.t1Gcaud3154.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2057_length_7025_cov_4.195991 2707..3250 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3154.t1.start1Gcaud3154.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2057_length_7025_cov_4.195991 2707..2709 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3154.t1.CDS1Gcaud3154.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2057_length_7025_cov_4.195991 2707..2817 +
Gcaud3154.t1.CDS2Gcaud3154.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_2057_length_7025_cov_4.195991 2873..3250 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3154.t1.exon1Gcaud3154.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2057_length_7025_cov_4.195991 2707..2817 +
Gcaud3154.t1.exon2Gcaud3154.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_2057_length_7025_cov_4.195991 2873..3250 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3154.t1.intron1Gcaud3154.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_2057_length_7025_cov_4.195991 2818..2872 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3154.t1.stop1Gcaud3154.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2057_length_7025_cov_4.195991 3248..3250 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3154.t1 ID=Gcaud3154.t1|Name=Gcaud3154.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=163bp
MQAPSPQPADLKLLVHNARLELDAILTTLKQVLTFVASGEQDADRTERST
PTANGPSAQPSVPPDNQTLEPVMQRFESLRTAVANAVSVHAAMVAKAEQD
ESLVTPQQRAALVEQKKCLVDEIRVKNEKIKLLIDQLRDLHRDITVLVST
YLHASPTARHKK*
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spliced messenger RNA

>Gcaud3154.t1 ID=Gcaud3154.t1|Name=Gcaud3154.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=489bp|location=Sequence derived from alignment at NODE_2057_length_7025_cov_4.195991:2707..3250+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGCGCCATCGCCCCAACCGGCCGACCTAAAGCTGCTGGTTCACAA
CGCGCGCCTCGAACTCGACGCCATTCTGACCACGTTGAAACAGGTACTCA
CGTTTGTTGCTAGCGGCGAGCAAGACGCCGACAGAACAGAACGATCCACC
CCCACAGCAAACGGTCCATCCGCGCAACCCTCCGTGCCACCCGACAATCA
AACCTTAGAACCTGTCATGCAACGCTTCGAAAGCCTGCGCACCGCCGTCG
CGAACGCCGTCTCAGTGCATGCTGCCATGGTGGCCAAGGCCGAACAGGAC
GAAAGTCTGGTTACCCCTCAACAACGCGCTGCGCTCGTGGAGCAGAAGAA
ATGCTTGGTGGACGAGATCCGTGTCAAGAACGAAAAGATCAAACTGCTCA
TAGATCAACTTCGCGACTTACATCGCGATATTACAGTCTTAGTCAGTACC
TACCTTCACGCCTCTCCTACCGCGCGACATAAGAAATGA
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protein sequence of Gcaud3154.t1

>Gcaud3154.t1 ID=Gcaud3154.t1|Name=Gcaud3154.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=163bp
MQAPSPQPADLKLLVHNARLELDAILTTLKQVLTFVASGEQDADRTERST
PTANGPSAQPSVPPDNQTLEPVMQRFESLRTAVANAVSVHAAMVAKAEQD
ESLVTPQQRAALVEQKKCLVDEIRVKNEKIKLLIDQLRDLHRDITVLVST
YLHASPTARHKK*
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mRNA from alignment at NODE_2057_length_7025_cov_4.195991:2707..3250+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3154.t1 ID=Gcaud3154.t1|Name=Gcaud3154.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=544bp|location=Sequence derived from alignment at NODE_2057_length_7025_cov_4.195991:2707..3250+ (Gracilaria caudata M_176_S67 male)
ATGCAGGCGCCATCGCCCCAACCGGCCGACCTAAAGCTGCTGGTTCACAA
CGCGCGCCTCGAACTCGACGCCATTCTGACCACGTTGAAACAGGTACTCA
CGTTTGTTGCTGTACGTTACACCATTCCTTCATCGCTGTGTCAGATTTTC
TAACGTCTTTGCGTAGAGCGGCGAGCAAGACGCCGACAGAACAGAACGAT
CCACCCCCACAGCAAACGGTCCATCCGCGCAACCCTCCGTGCCACCCGAC
AATCAAACCTTAGAACCTGTCATGCAACGCTTCGAAAGCCTGCGCACCGC
CGTCGCGAACGCCGTCTCAGTGCATGCTGCCATGGTGGCCAAGGCCGAAC
AGGACGAAAGTCTGGTTACCCCTCAACAACGCGCTGCGCTCGTGGAGCAG
AAGAAATGCTTGGTGGACGAGATCCGTGTCAAGAACGAAAAGATCAAACT
GCTCATAGATCAACTTCGCGACTTACATCGCGATATTACAGTCTTAGTCA
GTACCTACCTTCACGCCTCTCCTACCGCGCGACATAAGAAATGA
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Coding sequence (CDS) from alignment at NODE_2057_length_7025_cov_4.195991:2707..3250+

>Gcaud3154.t1 ID=Gcaud3154.t1|Name=Gcaud3154.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=489bp|location=Sequence derived from alignment at NODE_2057_length_7025_cov_4.195991:2707..3250+ (Gracilaria caudata M_176_S67 male)
ATGCAGGCGCCATCGCCCCAACCGGCCGACCTAAAGCTGCTGGTTCACAA
CGCGCGCCTCGAACTCGACGCCATTCTGACCACGTTGAAACAGGTACTCA
CGTTTGTTGCTAGCGGCGAGCAAGACGCCGACAGAACAGAACGATCCACC
CCCACAGCAAACGGTCCATCCGCGCAACCCTCCGTGCCACCCGACAATCA
AACCTTAGAACCTGTCATGCAACGCTTCGAAAGCCTGCGCACCGCCGTCG
CGAACGCCGTCTCAGTGCATGCTGCCATGGTGGCCAAGGCCGAACAGGAC
GAAAGTCTGGTTACCCCTCAACAACGCGCTGCGCTCGTGGAGCAGAAGAA
ATGCTTGGTGGACGAGATCCGTGTCAAGAACGAAAAGATCAAACTGCTCA
TAGATCAACTTCGCGACTTACATCGCGATATTACAGTCTTAGTCAGTACC
TACCTTCACGCCTCTCCTACCGCGCGACATAAGAAATGA
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