Gcaud2364.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2364.t1
Unique Name	Gcaud2364.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	342

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2050_length_7062_cov_5.027399	contig	NODE_2050_length_7062_cov_5.027399:3868..4982 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	529818.AMSG_04750T0
PFAMs	4HBT
Max annot lvl	2759\|Eukaryota
Evalue	4.46e-19
EggNOG OGs	2C16H@1\|root,2S2P3@2759\|Eukaryota
Description	Thioesterase superfamily
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2364	Gcaud2364	Gracilaria caudata M_176_S67 male	gene	NODE_2050_length_7062_cov_5.027399 3868..4982 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2364.t1	Gcaud2364.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2050_length_7062_cov_5.027399 3868..4982 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2364.t1.stop1	Gcaud2364.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2050_length_7062_cov_5.027399 3868..3870 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2364.t1.CDS1	Gcaud2364.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2050_length_7062_cov_5.027399 3868..4591 -
Gcaud2364.t1.CDS2	Gcaud2364.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_2050_length_7062_cov_5.027399 4681..4982 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2364.t1.exon1	Gcaud2364.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2050_length_7062_cov_5.027399 3868..4591 -
Gcaud2364.t1.exon2	Gcaud2364.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_2050_length_7062_cov_5.027399 4681..4982 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2364.t1.intron1	Gcaud2364.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_2050_length_7062_cov_5.027399 4592..4680 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2364.t1.start1	Gcaud2364.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2050_length_7062_cov_5.027399 4980..4982 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2050_length_7062_cov_5.027399:3868..4982-
coding sequence from alignment at NODE_2050_length_7062_cov_5.027399:3868..4982-

mRNA sequence

>Gcaud2364.t1 ID=Gcaud2364.t1|Name=Gcaud2364.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=342bp
MIADLIDVVGDSSRYGQPATLASLLSLLDIVCGRCSALYSGGSVVTGCLD
ELNVYAPLTHGQIVAVVCRVVSTGRSSMFLRILASTYEPVGSTKQPQIIA
SGYATFVAVDPKANRSRPLPDTSNCSSTNRSREPHIRLLFEEKEVKSDLF
PSFAARRKQLRESSSPERQLKALEHLKCVSFKRVLDVDETEITIRKHFLP
RHENYGGVVFGGDILETFENAALSCASRMQQKPMRTVAIRSISFLAPVQR
GAMLHVTARVIACTRQTIIVLIRSFIDQESNRFSLQPSHYGVFYLAAQDA
EEVQVGVRAWQSTHEDELHRVLSLPFSDIVPSCLGEAQSLS*

spliced messenger RNA

>Gcaud2364.t1 ID=Gcaud2364.t1|Name=Gcaud2364.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1026bp|location=Sequence derived from alignment at NODE_2050_length_7062_cov_5.027399:3868..4982- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGCAGACCTTATTGACGTCGTTGGCGACTCTTCCCGGTATGGGCA
GCCTGCCACTCTAGCCTCGCTTTTGTCTTTGTTGGATATCGTTTGCGGTA
GGTGCTCTGCGCTTTATTCCGGTGGTTCTGTTGTTACCGGGTGCTTGGAT
GAGCTTAATGTGTACGCCCCCCTCACACATGGTCAAATCGTCGCCGTCGT
ATGCCGGGTGGTTTCAACGGGAAGATCAAGCATGTTCCTTCGCATTCTGG
CTAGCACCTATGAACCTGTGGGCTCGACAAAGCAACCGCAAATAATAGCA
AGCGGCTATGCCACTTTTGTAGCGGTTGATCCAAAGGCGAATCGTTCTCG
ACCTCTCCCGGACACGTCCAATTGTTCATCTACAAACCGATCCCGAGAGC
CACACATAAGACTGTTATTCGAGGAAAAAGAAGTGAAAAGCGATCTGTTC
CCTTCATTCGCTGCTCGACGAAAACAACTAAGGGAAAGCTCATCGCCCGA
AAGACAGCTGAAAGCACTCGAACATCTGAAGTGTGTCTCATTCAAACGTG
TCCTGGATGTAGACGAAACAGAAATCACAATCCGAAAGCATTTTCTTCCT
CGTCATGAAAACTATGGCGGTGTCGTGTTTGGCGGAGACATTCTGGAAAC
CTTTGAAAATGCTGCACTTAGCTGTGCGTCTCGAATGCAACAAAAGCCAA
TGCGAACAGTAGCAATACGAAGCATATCATTTCTTGCTCCTGTGCAAAGA
GGTGCTATGTTGCATGTAACTGCGAGGGTAATTGCCTGCACACGTCAAAC
TATCATCGTGCTGATACGCTCCTTTATAGATCAAGAAAGCAACCGTTTCA
GTTTGCAACCAAGTCACTACGGAGTTTTTTATCTTGCAGCTCAAGACGCA
GAGGAAGTTCAGGTGGGAGTTCGGGCGTGGCAAAGTACTCATGAAGATGA
GTTGCATAGAGTGCTCTCGTTGCCTTTTTCAGATATTGTCCCTTCCTGTT
TGGGCGAAGCCCAGAGCCTCTCATAG

protein sequence of Gcaud2364.t1

>Gcaud2364.t1 ID=Gcaud2364.t1|Name=Gcaud2364.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=342bp
MIADLIDVVGDSSRYGQPATLASLLSLLDIVCGRCSALYSGGSVVTGCLD
ELNVYAPLTHGQIVAVVCRVVSTGRSSMFLRILASTYEPVGSTKQPQIIA
SGYATFVAVDPKANRSRPLPDTSNCSSTNRSREPHIRLLFEEKEVKSDLF
PSFAARRKQLRESSSPERQLKALEHLKCVSFKRVLDVDETEITIRKHFLP
RHENYGGVVFGGDILETFENAALSCASRMQQKPMRTVAIRSISFLAPVQR
GAMLHVTARVIACTRQTIIVLIRSFIDQESNRFSLQPSHYGVFYLAAQDA
EEVQVGVRAWQSTHEDELHRVLSLPFSDIVPSCLGEAQSLS*

mRNA from alignment at NODE_2050_length_7062_cov_5.027399:3868..4982-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2364.t1 ID=Gcaud2364.t1|Name=Gcaud2364.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1115bp|location=Sequence derived from alignment at NODE_2050_length_7062_cov_5.027399:3868..4982- (Gracilaria caudata M_176_S67 male)
ATGATTGCAGACCTTATTGACGTCGTTGGCGACTCTTCCCGGTATGGGCA
GCCTGCCACTCTAGCCTCGCTTTTGTCTTTGTTGGATATCGTTTGCGGTA
GGTGCTCTGCGCTTTATTCCGGTGGTTCTGTTGTTACCGGGTGCTTGGAT
GAGCTTAATGTGTACGCCCCCCTCACACATGGTCAAATCGTCGCCGTCGT
ATGCCGGGTGGTTTCAACGGGAAGATCAAGCATGTTCCTTCGCATTCTGG
CTAGCACCTATGAACCTGTGGGCTCGACAAAGCAACCGCAAATAATAGCA
AGGTATGTTGTTCTATTATGATAGATTTCGTGTTTGCATTGTTCTGGTAT
GCTAACTATGATTTCTTGATATCATAACGACTTGTTTACAGCGGCTATGC
CACTTTTGTAGCGGTTGATCCAAAGGCGAATCGTTCTCGACCTCTCCCGG
ACACGTCCAATTGTTCATCTACAAACCGATCCCGAGAGCCACACATAAGA
CTGTTATTCGAGGAAAAAGAAGTGAAAAGCGATCTGTTCCCTTCATTCGC
TGCTCGACGAAAACAACTAAGGGAAAGCTCATCGCCCGAAAGACAGCTGA
AAGCACTCGAACATCTGAAGTGTGTCTCATTCAAACGTGTCCTGGATGTA
GACGAAACAGAAATCACAATCCGAAAGCATTTTCTTCCTCGTCATGAAAA
CTATGGCGGTGTCGTGTTTGGCGGAGACATTCTGGAAACCTTTGAAAATG
CTGCACTTAGCTGTGCGTCTCGAATGCAACAAAAGCCAATGCGAACAGTA
GCAATACGAAGCATATCATTTCTTGCTCCTGTGCAAAGAGGTGCTATGTT
GCATGTAACTGCGAGGGTAATTGCCTGCACACGTCAAACTATCATCGTGC
TGATACGCTCCTTTATAGATCAAGAAAGCAACCGTTTCAGTTTGCAACCA
AGTCACTACGGAGTTTTTTATCTTGCAGCTCAAGACGCAGAGGAAGTTCA
GGTGGGAGTTCGGGCGTGGCAAAGTACTCATGAAGATGAGTTGCATAGAG
TGCTCTCGTTGCCTTTTTCAGATATTGTCCCTTCCTGTTTGGGCGAAGCC
CAGAGCCTCTCATAG

Coding sequence (CDS) from alignment at NODE_2050_length_7062_cov_5.027399:3868..4982-

>Gcaud2364.t1 ID=Gcaud2364.t1|Name=Gcaud2364.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1026bp|location=Sequence derived from alignment at NODE_2050_length_7062_cov_5.027399:3868..4982- (Gracilaria caudata M_176_S67 male)
ATGATTGCAGACCTTATTGACGTCGTTGGCGACTCTTCCCGGTATGGGCA
GCCTGCCACTCTAGCCTCGCTTTTGTCTTTGTTGGATATCGTTTGCGGTA
GGTGCTCTGCGCTTTATTCCGGTGGTTCTGTTGTTACCGGGTGCTTGGAT
GAGCTTAATGTGTACGCCCCCCTCACACATGGTCAAATCGTCGCCGTCGT
ATGCCGGGTGGTTTCAACGGGAAGATCAAGCATGTTCCTTCGCATTCTGG
CTAGCACCTATGAACCTGTGGGCTCGACAAAGCAACCGCAAATAATAGCA
AGCGGCTATGCCACTTTTGTAGCGGTTGATCCAAAGGCGAATCGTTCTCG
ACCTCTCCCGGACACGTCCAATTGTTCATCTACAAACCGATCCCGAGAGC
CACACATAAGACTGTTATTCGAGGAAAAAGAAGTGAAAAGCGATCTGTTC
CCTTCATTCGCTGCTCGACGAAAACAACTAAGGGAAAGCTCATCGCCCGA
AAGACAGCTGAAAGCACTCGAACATCTGAAGTGTGTCTCATTCAAACGTG
TCCTGGATGTAGACGAAACAGAAATCACAATCCGAAAGCATTTTCTTCCT
CGTCATGAAAACTATGGCGGTGTCGTGTTTGGCGGAGACATTCTGGAAAC
CTTTGAAAATGCTGCACTTAGCTGTGCGTCTCGAATGCAACAAAAGCCAA
TGCGAACAGTAGCAATACGAAGCATATCATTTCTTGCTCCTGTGCAAAGA
GGTGCTATGTTGCATGTAACTGCGAGGGTAATTGCCTGCACACGTCAAAC
TATCATCGTGCTGATACGCTCCTTTATAGATCAAGAAAGCAACCGTTTCA
GTTTGCAACCAAGTCACTACGGAGTTTTTTATCTTGCAGCTCAAGACGCA
GAGGAAGTTCAGGTGGGAGTTCGGGCGTGGCAAAGTACTCATGAAGATGA
GTTGCATAGAGTGCTCTCGTTGCCTTTTTCAGATATTGTCCCTTCCTGTT
TGGGCGAAGCCCAGAGCCTCTCATAG