Gcaud1930.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1930.t1
Unique NameGcaud1930.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length191
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_105_length_50300_cov_4.471768contigNODE_105_length_50300_cov_4.471768:25652..26667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706247.1
PFAMsRRM_1
Max annot lvl2759|Eukaryota
KEGG koko:K02884,ko:K09201,ko:K14396
KEGG Pathwayko03010,ko03015,ko05164,map03010,map03015,map05164
KEGG ModuleM00178
GOsGO:0000184,GO:0000228,GO:0000339,GO:0000340,GO:0000375,GO:0000377,GO:0000398,GO:0000785,GO:0000790,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005844,GO:0005845,GO:0005846,GO:0006139,GO:0006351,GO:0006353,GO:0006354,GO:0006366,GO:0006368,GO:0006369,GO:0006370,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006408,GO:0006417,GO:0006446,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008104,GO:0008143,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0008543,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009301,GO:0009452,GO:0009719,GO:0009889,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016070,GO:0016071,GO:0016073,GO:0016604,GO:0016607,GO:0017069,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0023052,GO:0031090,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031440,GO:0031442,GO:0031503,GO:0031974,GO:0031981,GO:0032239,GO:0032241,GO:0032268,GO:0032386,GO:0032388,GO:0032774,GO:0032879,GO:0032991,GO:0033036,GO:0034248,GO:0034518,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0036260,GO:0042221,GO:0042795,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043621,GO:0043631,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044437,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045184,GO:0045292,GO:0045935,GO:0046483,GO:0046700,GO:0046822,GO:0046824,GO:0046831,GO:0046833,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0050657,GO:0050658,GO:0050684,GO:0050685,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051030,GO:0051049,GO:0051050,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051252,GO:0051254,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070717,GO:0070727,GO:0070848,GO:0070887,GO:0071166,GO:0071310,GO:0071363,GO:0071426,GO:0071427,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071774,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097064,GO:0097159,GO:0097659,GO:0098588,GO:0098781,GO:0098787,GO:0098789,GO:0098805,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1903311,GO:1903313,GO:1990251,GO:1990904,GO:2000112
Evalue8.47e-17
EggNOG OGsKOG4209@1|root,KOG4209@2759|Eukaryota
Descriptionpositive regulation of polynucleotide adenylyltransferase activity
COG categoryS
BRITEbr01610,ko00000,ko00001,ko00002,ko03000,ko03011,ko03019,ko03029,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1930Gcaud1930Gracilaria caudata M_176_S67 malegeneNODE_105_length_50300_cov_4.471768 25652..26667 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1930.t1Gcaud1930.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_105_length_50300_cov_4.471768 25652..26667 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1930.t1.start1Gcaud1930.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_105_length_50300_cov_4.471768 25652..25654 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1930.t1.CDS1Gcaud1930.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_105_length_50300_cov_4.471768 25652..25676 +
Gcaud1930.t1.CDS2Gcaud1930.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_105_length_50300_cov_4.471768 25843..26018 +
Gcaud1930.t1.CDS3Gcaud1930.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_105_length_50300_cov_4.471768 26119..26343 +
Gcaud1930.t1.CDS4Gcaud1930.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_105_length_50300_cov_4.471768 26453..26565 +
Gcaud1930.t1.CDS5Gcaud1930.t1.CDS5Gracilaria caudata M_176_S67 maleCDSNODE_105_length_50300_cov_4.471768 26634..26667 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1930.t1.exon1Gcaud1930.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_105_length_50300_cov_4.471768 25652..25676 +
Gcaud1930.t1.exon2Gcaud1930.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_105_length_50300_cov_4.471768 25843..26018 +
Gcaud1930.t1.exon3Gcaud1930.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_105_length_50300_cov_4.471768 26119..26343 +
Gcaud1930.t1.exon4Gcaud1930.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_105_length_50300_cov_4.471768 26453..26565 +
Gcaud1930.t1.exon5Gcaud1930.t1.exon5Gracilaria caudata M_176_S67 maleexonNODE_105_length_50300_cov_4.471768 26634..26667 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1930.t1.intron1Gcaud1930.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_105_length_50300_cov_4.471768 25677..25842 +
Gcaud1930.t1.intron2Gcaud1930.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_105_length_50300_cov_4.471768 26019..26118 +
Gcaud1930.t1.intron3Gcaud1930.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_105_length_50300_cov_4.471768 26344..26452 +
Gcaud1930.t1.intron4Gcaud1930.t1.intron4Gracilaria caudata M_176_S67 maleintronNODE_105_length_50300_cov_4.471768 26566..26633 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1930.t1.stop1Gcaud1930.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_105_length_50300_cov_4.471768 26665..26667 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1930.t1 ID=Gcaud1930.t1|Name=Gcaud1930.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=191bp
LKCSPNRLRGVVPETDVQEAETNIGSEKEAKPDQPNGKGHQGQKTDPANE
QPEDNHEEEKPATDLDSELEAMKKRLLEMEQESFPLSAEGSGDPDNDAIA
GANSAATNAATKVPVDPNVPRGGIAADDAVADADARSIYVGNVDYSATVE
ELSKYFEECGTINRVTIITHKPTGAPKGYAPSTEDNSKKN*
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spliced messenger RNA

>Gcaud1930.t1 ID=Gcaud1930.t1|Name=Gcaud1930.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=573bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:25652..26667+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGAAGTGCAGCCCCAACCGATTGCGGGGAGTTGTCCCTGAGACCGATGT
GCAAGAAGCAGAGACAAATATTGGAAGTGAAAAAGAAGCAAAACCCGACC
AGCCGAACGGAAAAGGTCATCAAGGGCAAAAGACAGACCCCGCTAATGAG
CAACCCGAAGACAACCACGAAGAAGAAAAGCCAGCCACTGACCTGGATTC
AGAGCTTGAAGCAATGAAAAAACGTTTGCTCGAGATGGAACAAGAGTCGT
TCCCACTAAGTGCAGAGGGTTCCGGTGACCCGGATAATGACGCTATCGCA
GGCGCTAATTCTGCTGCCACAAACGCTGCGACAAAAGTGCCCGTAGATCC
CAATGTGCCAAGAGGGGGCATTGCTGCTGACGACGCCGTAGCAGATGCCG
ATGCAAGGTCCATTTATGTCGGAAACGTTGACTACAGTGCAACAGTTGAA
GAGCTCAGCAAGTATTTCGAGGAGTGTGGAACAATCAACAGAGTAACTAT
CATAACTCACAAGCCTACAGGTGCCCCCAAAGGGTATGCGCCGTCAACTG
AAGATAACAGCAAAAAGAACTAA
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protein sequence of Gcaud1930.t1

>Gcaud1930.t1 ID=Gcaud1930.t1|Name=Gcaud1930.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=191bp
LKCSPNRLRGVVPETDVQEAETNIGSEKEAKPDQPNGKGHQGQKTDPANE
QPEDNHEEEKPATDLDSELEAMKKRLLEMEQESFPLSAEGSGDPDNDAIA
GANSAATNAATKVPVDPNVPRGGIAADDAVADADARSIYVGNVDYSATVE
ELSKYFEECGTINRVTIITHKPTGAPKGYAPSTEDNSKKN*
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mRNA from alignment at NODE_105_length_50300_cov_4.471768:25652..26667+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1930.t1 ID=Gcaud1930.t1|Name=Gcaud1930.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1016bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:25652..26667+ (Gracilaria caudata M_176_S67 male)
TTGAAGTGCAGCCCCAACCGATTGCGTACGTACAACTTGCATTCCGCTAC
ATGTTCACCGGGCTCTTTGCCCGTACTCCCTCGTGAAGCTTTTGGTATAC
TTTTGTTTAAGAACTTTCGTGTACCACCAACTGCAATTAACTTCTGATTT
CCAGCTTACTTTACGCAAACCAACTATGGCCACCAATGAAGGGGGAGTTG
TCCCTGAGACCGATGTGCAAGAAGCAGAGACAAATATTGGAAGTGAAAAA
GAAGCAAAACCCGACCAGCCGAACGGAAAAGGTCATCAAGGGCAAAAGAC
AGACCCCGCTAATGAGCAACCCGAAGACAACCACGAAGAAGAAAAGCCAG
CCACTGACCTGGATTCAGTACGTTGGTCTGACTACGCTTTTCGGCGATCC
TTTTGAATTGACATAGACATAACTGAACATCTAACCTTCGTCTGAAATGC
AAATCTTATCTATACAGGAGCTTGAAGCAATGAAAAAACGTTTGCTCGAG
ATGGAACAAGAGTCGTTCCCACTAAGTGCAGAGGGTTCCGGTGACCCGGA
TAATGACGCTATCGCAGGCGCTAATTCTGCTGCCACAAACGCTGCGACAA
AAGTGCCCGTAGATCCCAATGTGCCAAGAGGGGGCATTGCTGCTGACGAC
GCCGTAGCAGATGCCGATGCAAGGTCCATTTATGTCGGAAACGTATGTTT
GAAGTCTTCTGTTGAGATTGCTTGCGATTTATGCGCTCCCCTGTTCACAA
CTCTAACAACCCTTCCTTCTTATACTCGTTCGGTTCATGCCTACCATACA
GGTTGACTACAGTGCAACAGTTGAAGAGCTCAGCAAGTATTTCGAGGAGT
GTGGAACAATCAACAGAGTAACTATCATAACTCACAAGCCTACAGGTGCC
CCCAAAGGGTATGCGTATGTGGAGTTCAAGGACCAACATGCAGTGCAAAA
TGCGCTTATTCTCAATGAAGCCATGTTTAAAGGCCGTCAACTGAAGATAA
CAGCAAAAAGAACTAA
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Coding sequence (CDS) from alignment at NODE_105_length_50300_cov_4.471768:25652..26667+

>Gcaud1930.t1 ID=Gcaud1930.t1|Name=Gcaud1930.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=573bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:25652..26667+ (Gracilaria caudata M_176_S67 male)
TTGAAGTGCAGCCCCAACCGATTGCGGGGAGTTGTCCCTGAGACCGATGT
GCAAGAAGCAGAGACAAATATTGGAAGTGAAAAAGAAGCAAAACCCGACC
AGCCGAACGGAAAAGGTCATCAAGGGCAAAAGACAGACCCCGCTAATGAG
CAACCCGAAGACAACCACGAAGAAGAAAAGCCAGCCACTGACCTGGATTC
AGAGCTTGAAGCAATGAAAAAACGTTTGCTCGAGATGGAACAAGAGTCGT
TCCCACTAAGTGCAGAGGGTTCCGGTGACCCGGATAATGACGCTATCGCA
GGCGCTAATTCTGCTGCCACAAACGCTGCGACAAAAGTGCCCGTAGATCC
CAATGTGCCAAGAGGGGGCATTGCTGCTGACGACGCCGTAGCAGATGCCG
ATGCAAGGTCCATTTATGTCGGAAACGTTGACTACAGTGCAACAGTTGAA
GAGCTCAGCAAGTATTTCGAGGAGTGTGGAACAATCAACAGAGTAACTAT
CATAACTCACAAGCCTACAGGTGCCCCCAAAGGGTATGCGCCGTCAACTG
AAGATAACAGCAAAAAGAACTAA
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