Gcaud1208.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1208.t1
Unique Name	Gcaud1208.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	285

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2037_length_7110_cov_4.300328	contig	NODE_2037_length_7110_cov_4.300328:5888..6817 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1208	Gcaud1208	Gracilaria caudata M_176_S67 male	gene	NODE_2037_length_7110_cov_4.300328 5888..6817 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1208.t1	Gcaud1208.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2037_length_7110_cov_4.300328 5888..6817 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1208.t1.start1	Gcaud1208.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2037_length_7110_cov_4.300328 5888..5890 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1208.t1.CDS1	Gcaud1208.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2037_length_7110_cov_4.300328 5888..6019 +
Gcaud1208.t1.CDS2	Gcaud1208.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_2037_length_7110_cov_4.300328 6095..6817 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1208.t1.exon1	Gcaud1208.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2037_length_7110_cov_4.300328 5888..6019 +
Gcaud1208.t1.exon2	Gcaud1208.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_2037_length_7110_cov_4.300328 6095..6817 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1208.t1.intron1	Gcaud1208.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_2037_length_7110_cov_4.300328 6020..6094 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1208.t1.stop1	Gcaud1208.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2037_length_7110_cov_4.300328 6815..6817 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2037_length_7110_cov_4.300328:5888..6817+
coding sequence from alignment at NODE_2037_length_7110_cov_4.300328:5888..6817+

mRNA sequence

>Gcaud1208.t1 ID=Gcaud1208.t1|Name=Gcaud1208.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=285bp
MPRLMGQSTKLHLAAIVLSGFSFNYGVEQLGSIARARIIENIGQLALHLD
MDGTLTAAGQPLCQRAIRVINELQKLNVPVSCNTAQSNEYLLAAGGDVFM
ARVNELGLRVQHSDGNVVTTPPPRFGAELESAKQFLRDRPAFNVLLVEKN
GGFAFKFSDKDGRLASHNQVNTTCEFVRKLVLRNEQLTFVKTDGFIDVCS
AILSKRYGALVQMQCKSFKGCFHVAAGDGRTDERMFEVVDLAVKVGREPS
RADTRLKSHVEMLDVLEWIAQMRAMHNEFNHKDI*

spliced messenger RNA

>Gcaud1208.t1 ID=Gcaud1208.t1|Name=Gcaud1208.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=855bp|location=Sequence derived from alignment at NODE_2037_length_7110_cov_4.300328:5888..6817+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCGCCTCATGGGTCAAAGCACGAAGCTTCATCTCGCTGCAATCGT
TCTCTCGGGCTTCTCGTTCAATTACGGCGTTGAGCAGCTCGGTTCCATAG
CGCGAGCCCGCATCATTGAGAATATCGGACAACTTGCGCTTCATCTCGAT
ATGGATGGAACGCTGACTGCGGCCGGACAGCCACTCTGCCAGCGCGCCAT
CAGGGTGATCAATGAGCTTCAGAAGCTGAACGTGCCGGTGTCGTGCAACA
CAGCGCAGTCGAACGAGTATTTACTGGCTGCCGGCGGCGATGTGTTCATG
GCGAGGGTGAATGAACTGGGGCTGCGAGTGCAGCACAGCGACGGCAACGT
GGTGACTACTCCACCACCTCGATTTGGCGCTGAACTTGAGAGCGCGAAAC
AGTTTTTGAGAGATCGTCCCGCGTTCAATGTTTTACTGGTGGAGAAGAAC
GGCGGTTTTGCGTTCAAGTTTTCTGACAAGGATGGGCGACTTGCTTCACA
CAACCAGGTGAACACCACTTGCGAGTTTGTGCGAAAGCTAGTGTTGCGAA
ATGAGCAGCTCACGTTCGTGAAGACTGACGGCTTTATCGATGTGTGTTCG
GCGATTCTGTCCAAACGCTACGGCGCGTTGGTGCAGATGCAGTGCAAATC
GTTCAAGGGCTGCTTCCATGTTGCGGCGGGCGACGGACGCACCGACGAGC
GCATGTTCGAGGTGGTGGATCTCGCCGTGAAGGTCGGTCGTGAGCCGAGC
CGTGCTGATACACGTCTCAAAAGCCATGTGGAGATGCTGGATGTCTTGGA
GTGGATTGCTCAAATGCGCGCGATGCATAATGAGTTCAACCACAAAGACA
TTTGA

protein sequence of Gcaud1208.t1

>Gcaud1208.t1 ID=Gcaud1208.t1|Name=Gcaud1208.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=285bp
MPRLMGQSTKLHLAAIVLSGFSFNYGVEQLGSIARARIIENIGQLALHLD
MDGTLTAAGQPLCQRAIRVINELQKLNVPVSCNTAQSNEYLLAAGGDVFM
ARVNELGLRVQHSDGNVVTTPPPRFGAELESAKQFLRDRPAFNVLLVEKN
GGFAFKFSDKDGRLASHNQVNTTCEFVRKLVLRNEQLTFVKTDGFIDVCS
AILSKRYGALVQMQCKSFKGCFHVAAGDGRTDERMFEVVDLAVKVGREPS
RADTRLKSHVEMLDVLEWIAQMRAMHNEFNHKDI*

mRNA from alignment at NODE_2037_length_7110_cov_4.300328:5888..6817+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1208.t1 ID=Gcaud1208.t1|Name=Gcaud1208.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=930bp|location=Sequence derived from alignment at NODE_2037_length_7110_cov_4.300328:5888..6817+ (Gracilaria caudata M_176_S67 male)
ATGCCTCGCCTCATGGGTCAAAGCACGAAGCTTCATCTCGCTGCAATCGT
TCTCTCGGGCTTCTCGTTCAATTACGGCGTTGAGCAGCTCGGTTCCATAG
CGCGAGCCCGCATCATTGAGAATATCGGACAAGTAAGTGCGCCTTTTTTT
TTCCTTCTAGCATGCAGCAGCAACCCTCGAGCCCCATTCTGACGCTGTGT
TTGCCAGCTTGCGCTTCATCTCGATATGGATGGAACGCTGACTGCGGCCG
GACAGCCACTCTGCCAGCGCGCCATCAGGGTGATCAATGAGCTTCAGAAG
CTGAACGTGCCGGTGTCGTGCAACACAGCGCAGTCGAACGAGTATTTACT
GGCTGCCGGCGGCGATGTGTTCATGGCGAGGGTGAATGAACTGGGGCTGC
GAGTGCAGCACAGCGACGGCAACGTGGTGACTACTCCACCACCTCGATTT
GGCGCTGAACTTGAGAGCGCGAAACAGTTTTTGAGAGATCGTCCCGCGTT
CAATGTTTTACTGGTGGAGAAGAACGGCGGTTTTGCGTTCAAGTTTTCTG
ACAAGGATGGGCGACTTGCTTCACACAACCAGGTGAACACCACTTGCGAG
TTTGTGCGAAAGCTAGTGTTGCGAAATGAGCAGCTCACGTTCGTGAAGAC
TGACGGCTTTATCGATGTGTGTTCGGCGATTCTGTCCAAACGCTACGGCG
CGTTGGTGCAGATGCAGTGCAAATCGTTCAAGGGCTGCTTCCATGTTGCG
GCGGGCGACGGACGCACCGACGAGCGCATGTTCGAGGTGGTGGATCTCGC
CGTGAAGGTCGGTCGTGAGCCGAGCCGTGCTGATACACGTCTCAAAAGCC
ATGTGGAGATGCTGGATGTCTTGGAGTGGATTGCTCAAATGCGCGCGATG
CATAATGAGTTCAACCACAAAGACATTTGA

Coding sequence (CDS) from alignment at NODE_2037_length_7110_cov_4.300328:5888..6817+

>Gcaud1208.t1 ID=Gcaud1208.t1|Name=Gcaud1208.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=855bp|location=Sequence derived from alignment at NODE_2037_length_7110_cov_4.300328:5888..6817+ (Gracilaria caudata M_176_S67 male)
ATGCCTCGCCTCATGGGTCAAAGCACGAAGCTTCATCTCGCTGCAATCGT
TCTCTCGGGCTTCTCGTTCAATTACGGCGTTGAGCAGCTCGGTTCCATAG
CGCGAGCCCGCATCATTGAGAATATCGGACAACTTGCGCTTCATCTCGAT
ATGGATGGAACGCTGACTGCGGCCGGACAGCCACTCTGCCAGCGCGCCAT
CAGGGTGATCAATGAGCTTCAGAAGCTGAACGTGCCGGTGTCGTGCAACA
CAGCGCAGTCGAACGAGTATTTACTGGCTGCCGGCGGCGATGTGTTCATG
GCGAGGGTGAATGAACTGGGGCTGCGAGTGCAGCACAGCGACGGCAACGT
GGTGACTACTCCACCACCTCGATTTGGCGCTGAACTTGAGAGCGCGAAAC
AGTTTTTGAGAGATCGTCCCGCGTTCAATGTTTTACTGGTGGAGAAGAAC
GGCGGTTTTGCGTTCAAGTTTTCTGACAAGGATGGGCGACTTGCTTCACA
CAACCAGGTGAACACCACTTGCGAGTTTGTGCGAAAGCTAGTGTTGCGAA
ATGAGCAGCTCACGTTCGTGAAGACTGACGGCTTTATCGATGTGTGTTCG
GCGATTCTGTCCAAACGCTACGGCGCGTTGGTGCAGATGCAGTGCAAATC
GTTCAAGGGCTGCTTCCATGTTGCGGCGGGCGACGGACGCACCGACGAGC
GCATGTTCGAGGTGGTGGATCTCGCCGTGAAGGTCGGTCGTGAGCCGAGC
CGTGCTGATACACGTCTCAAAAGCCATGTGGAGATGCTGGATGTCTTGGA
GTGGATTGCTCAAATGCGCGCGATGCATAATGAGTTCAACCACAAAGACA
TTTGA