Gcaud3410.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3410.t1
Unique NameGcaud3410.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length699
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2034_length_7137_cov_4.467357contigNODE_2034_length_7137_cov_4.467357:13..2109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703958.1
Preferred namesrk1
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K08286,ko:K08794
KEGG Pathwayko04921,ko04925,map04921,map04925
GOsGO:0000166,GO:0000935,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005938,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0007154,GO:0007165,GO:0007231,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009628,GO:0009987,GO:0010389,GO:0010515,GO:0010564,GO:0010948,GO:0010972,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019538,GO:0023052,GO:0030428,GO:0030554,GO:0031135,GO:0031137,GO:0031138,GO:0031647,GO:0031974,GO:0031981,GO:0032092,GO:0032153,GO:0032155,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0033043,GO:0033554,GO:0034399,GO:0034599,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0040020,GO:0042221,GO:0042763,GO:0042764,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043900,GO:0043901,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045786,GO:0045930,GO:0046999,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051098,GO:0051099,GO:0051128,GO:0051285,GO:0051286,GO:0051445,GO:0051716,GO:0051726,GO:0051783,GO:0060341,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071214,GO:0071470,GO:0071704,GO:0071944,GO:0072324,GO:0097159,GO:0097367,GO:0099568,GO:0099738,GO:0104004,GO:0140096,GO:1900180,GO:1900181,GO:1901265,GO:1901363,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903827,GO:1903828,GO:2000241,GO:2000242
Evalue1e-97
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota
EC2.7.11.17
Descriptionprotein serine/threonine kinase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3410Gcaud3410Gracilaria caudata M_176_S67 malegeneNODE_2034_length_7137_cov_4.467357 13..2109 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3410.t1.start1Gcaud3410.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2034_length_7137_cov_4.467357 13..15 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3410.t1.CDS1Gcaud3410.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2034_length_7137_cov_4.467357 13..2109 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3410.t1.exon1Gcaud3410.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2034_length_7137_cov_4.467357 13..2109 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3410.t1.stop1Gcaud3410.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2034_length_7137_cov_4.467357 2107..2109 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3410.t1Gcaud3410.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2034_length_7137_cov_4.467357 13..2109 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3410.t1 ID=Gcaud3410.t1|Name=Gcaud3410.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=699bp
MAASPPTARARARDVDARLLLAHHARATSPLRYTAVEPVCIEGWLAKEGR
SIRTRRNRYFTLNGTVLASHRAKSAAPSWHVSVADALVQRGMLPREIRIS
LPGRALSFIAPTQPAFEMWIVALRRASLASTRVDEYYSIGSLIGEGMNGQ
VRLAHDKMTDEPVAIKMVPRLGRQNEAHFLAREVQIILSISHPNIVRTID
VFVRTRRIHFVMEYLAGGELFDFISQNTHFTETHAAAVMTDLLNALHYLH
SRNIVHRDVKLENLLCANTTWPLNVKLADFGFANYLHADNRPSLHSFVGT
PYYIAPEMLRGDPHGCPVDVWASGVVMYILLSGKFPFGGNNESEYYQRVL
AKNAYFPSEEWANVSEDAKSLVRGMLCKDPRKRLTVEQCLAHPWLARAQP
VLNTTEPPLSTPEPLVTSEPNLRTATALKHNRTKRGKWRYLAMLNRSLSG
APEAIMPDQLQADYARAKHTLSESATVPCTRSPPSDCASNSVAATDTDLV
NRRPSLIRRILSSQKLSLDRFERECAPPRGCAEDKVDEASANPRKTLSLF
SKDGPLRRSFHRVSERATDDGINFVNSQSQRLPPKIARERQRQQKMAQAA
MKRTSRAAGALGSCKLNSATFGMTNEGYHSSPRLATHLLEPLHGFVMPCS
ASEGAASGGARSERMAIVDEHGDEVGSESRDDVLHGCYSRARAVPLGL*
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spliced messenger RNA

>Gcaud3410.t1 ID=Gcaud3410.t1|Name=Gcaud3410.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2097bp|location=Sequence derived from alignment at NODE_2034_length_7137_cov_4.467357:13..2109+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCTCCCCGCCCACCGCCCGCGCGCGTGCGCGCGACGTCGATGC
CCGTCTGCTACTGGCGCACCACGCCCGCGCCACCTCGCCGCTGCGCTACA
CCGCCGTGGAGCCCGTGTGCATAGAGGGTTGGCTGGCCAAGGAGGGCCGC
TCCATCCGCACCCGCCGCAATCGATACTTCACGCTCAACGGCACCGTGCT
GGCGTCGCACCGCGCCAAGAGCGCTGCCCCCAGCTGGCATGTGTCCGTGG
CCGATGCGCTGGTGCAGCGCGGCATGCTGCCCAGGGAAATCCGCATCTCG
CTGCCCGGTCGCGCTTTGTCCTTTATCGCCCCGACGCAGCCGGCCTTCGA
GATGTGGATCGTCGCCCTGCGCCGTGCCTCGCTAGCCAGCACCCGCGTCG
ACGAGTACTACTCCATTGGCTCCCTCATTGGCGAGGGCATGAATGGTCAG
GTGCGCCTGGCTCACGATAAGATGACGGACGAGCCCGTCGCCATCAAGAT
GGTGCCGCGCTTGGGGCGCCAGAACGAGGCGCACTTTCTGGCCAGGGAGG
TGCAGATCATTCTGTCCATCTCGCATCCGAACATCGTCCGCACCATCGAT
GTGTTTGTGCGCACGCGTCGCATCCACTTCGTCATGGAATATCTCGCGGG
CGGGGAACTTTTCGACTTCATCTCACAGAACACCCATTTCACAGAGACCC
ATGCCGCCGCCGTCATGACCGACTTGCTCAACGCCTTGCACTACCTGCAT
TCGCGAAATATTGTTCACCGCGACGTCAAATTGGAGAACTTGTTGTGCGC
CAATACCACATGGCCTCTCAACGTCAAACTCGCCGATTTTGGTTTTGCGA
ACTATCTGCACGCTGACAACCGCCCCTCGCTCCACAGTTTTGTCGGCACT
CCGTACTACATTGCGCCTGAGATGCTACGGGGAGATCCGCACGGTTGTCC
CGTTGACGTATGGGCCAGCGGTGTCGTCATGTATATCCTTCTAAGTGGCA
AGTTTCCATTCGGTGGAAACAACGAGTCAGAATACTATCAACGTGTACTG
GCAAAGAATGCGTACTTTCCTTCCGAAGAGTGGGCCAACGTTTCTGAGGA
CGCCAAAAGCCTTGTCAGAGGTATGCTTTGTAAGGATCCGCGCAAGCGAC
TCACTGTGGAACAGTGCTTGGCACACCCGTGGCTGGCGCGCGCTCAACCA
GTGTTAAACACTACGGAACCACCCCTTTCCACGCCGGAACCGCTCGTAAC
GTCCGAGCCTAATCTACGGACCGCCACAGCGCTGAAGCATAACCGTACCA
AACGAGGCAAATGGCGCTATCTGGCCATGCTCAATCGCTCGCTTTCCGGC
GCACCGGAGGCCATTATGCCCGACCAGCTGCAAGCCGATTATGCGCGAGC
CAAACATACGCTGTCAGAATCTGCCACCGTGCCGTGCACGCGCTCTCCGC
CTAGTGATTGCGCGAGTAACTCCGTGGCCGCCACGGACACCGATCTGGTC
AATCGGCGGCCTAGTCTCATTCGTCGCATTCTATCATCGCAAAAGCTATC
TTTGGACCGCTTCGAACGAGAGTGTGCGCCTCCGCGAGGCTGTGCAGAAG
ACAAAGTGGATGAGGCTTCTGCGAACCCTAGAAAGACCTTGTCGTTGTTC
TCAAAGGACGGGCCGTTGCGACGGTCGTTCCATCGAGTGAGCGAGCGCGC
GACGGATGACGGAATCAACTTCGTCAACTCGCAATCGCAACGTCTACCGC
CGAAAATCGCGAGGGAGAGACAACGGCAACAGAAAATGGCGCAAGCGGCG
ATGAAACGCACGTCGAGAGCAGCGGGTGCTCTGGGAAGTTGTAAACTGAA
CAGTGCCACGTTTGGCATGACGAATGAGGGGTATCATTCTTCTCCCAGAC
TTGCGACGCATTTGTTGGAGCCGTTGCACGGTTTTGTGATGCCTTGCTCG
GCATCGGAGGGCGCGGCGAGTGGTGGCGCGAGAAGTGAACGGATGGCGAT
TGTTGATGAGCATGGCGATGAGGTGGGCAGCGAGAGTAGGGACGACGTTT
TGCACGGCTGTTACTCGAGAGCACGCGCTGTGCCACTGGGATTGTAA
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protein sequence of Gcaud3410.t1

>Gcaud3410.t1 ID=Gcaud3410.t1|Name=Gcaud3410.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=699bp
MAASPPTARARARDVDARLLLAHHARATSPLRYTAVEPVCIEGWLAKEGR
SIRTRRNRYFTLNGTVLASHRAKSAAPSWHVSVADALVQRGMLPREIRIS
LPGRALSFIAPTQPAFEMWIVALRRASLASTRVDEYYSIGSLIGEGMNGQ
VRLAHDKMTDEPVAIKMVPRLGRQNEAHFLAREVQIILSISHPNIVRTID
VFVRTRRIHFVMEYLAGGELFDFISQNTHFTETHAAAVMTDLLNALHYLH
SRNIVHRDVKLENLLCANTTWPLNVKLADFGFANYLHADNRPSLHSFVGT
PYYIAPEMLRGDPHGCPVDVWASGVVMYILLSGKFPFGGNNESEYYQRVL
AKNAYFPSEEWANVSEDAKSLVRGMLCKDPRKRLTVEQCLAHPWLARAQP
VLNTTEPPLSTPEPLVTSEPNLRTATALKHNRTKRGKWRYLAMLNRSLSG
APEAIMPDQLQADYARAKHTLSESATVPCTRSPPSDCASNSVAATDTDLV
NRRPSLIRRILSSQKLSLDRFERECAPPRGCAEDKVDEASANPRKTLSLF
SKDGPLRRSFHRVSERATDDGINFVNSQSQRLPPKIARERQRQQKMAQAA
MKRTSRAAGALGSCKLNSATFGMTNEGYHSSPRLATHLLEPLHGFVMPCS
ASEGAASGGARSERMAIVDEHGDEVGSESRDDVLHGCYSRARAVPLGL*
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mRNA from alignment at NODE_2034_length_7137_cov_4.467357:13..2109+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3410.t1 ID=Gcaud3410.t1|Name=Gcaud3410.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2097bp|location=Sequence derived from alignment at NODE_2034_length_7137_cov_4.467357:13..2109+ (Gracilaria caudata M_176_S67 male)
ATGGCCGCCTCCCCGCCCACCGCCCGCGCGCGTGCGCGCGACGTCGATGC CCGTCTGCTACTGGCGCACCACGCCCGCGCCACCTCGCCGCTGCGCTACA CCGCCGTGGAGCCCGTGTGCATAGAGGGTTGGCTGGCCAAGGAGGGCCGC TCCATCCGCACCCGCCGCAATCGATACTTCACGCTCAACGGCACCGTGCT GGCGTCGCACCGCGCCAAGAGCGCTGCCCCCAGCTGGCATGTGTCCGTGG CCGATGCGCTGGTGCAGCGCGGCATGCTGCCCAGGGAAATCCGCATCTCG CTGCCCGGTCGCGCTTTGTCCTTTATCGCCCCGACGCAGCCGGCCTTCGA GATGTGGATCGTCGCCCTGCGCCGTGCCTCGCTAGCCAGCACCCGCGTCG ACGAGTACTACTCCATTGGCTCCCTCATTGGCGAGGGCATGAATGGTCAG GTGCGCCTGGCTCACGATAAGATGACGGACGAGCCCGTCGCCATCAAGAT GGTGCCGCGCTTGGGGCGCCAGAACGAGGCGCACTTTCTGGCCAGGGAGG TGCAGATCATTCTGTCCATCTCGCATCCGAACATCGTCCGCACCATCGAT GTGTTTGTGCGCACGCGTCGCATCCACTTCGTCATGGAATATCTCGCGGG CGGGGAACTTTTCGACTTCATCTCACAGAACACCCATTTCACAGAGACCC ATGCCGCCGCCGTCATGACCGACTTGCTCAACGCCTTGCACTACCTGCAT TCGCGAAATATTGTTCACCGCGACGTCAAATTGGAGAACTTGTTGTGCGC CAATACCACATGGCCTCTCAACGTCAAACTCGCCGATTTTGGTTTTGCGA ACTATCTGCACGCTGACAACCGCCCCTCGCTCCACAGTTTTGTCGGCACT CCGTACTACATTGCGCCTGAGATGCTACGGGGAGATCCGCACGGTTGTCC CGTTGACGTATGGGCCAGCGGTGTCGTCATGTATATCCTTCTAAGTGGCA AGTTTCCATTCGGTGGAAACAACGAGTCAGAATACTATCAACGTGTACTG GCAAAGAATGCGTACTTTCCTTCCGAAGAGTGGGCCAACGTTTCTGAGGA CGCCAAAAGCCTTGTCAGAGGTATGCTTTGTAAGGATCCGCGCAAGCGAC TCACTGTGGAACAGTGCTTGGCACACCCGTGGCTGGCGCGCGCTCAACCA GTGTTAAACACTACGGAACCACCCCTTTCCACGCCGGAACCGCTCGTAAC GTCCGAGCCTAATCTACGGACCGCCACAGCGCTGAAGCATAACCGTACCA AACGAGGCAAATGGCGCTATCTGGCCATGCTCAATCGCTCGCTTTCCGGC GCACCGGAGGCCATTATGCCCGACCAGCTGCAAGCCGATTATGCGCGAGC CAAACATACGCTGTCAGAATCTGCCACCGTGCCGTGCACGCGCTCTCCGC CTAGTGATTGCGCGAGTAACTCCGTGGCCGCCACGGACACCGATCTGGTC AATCGGCGGCCTAGTCTCATTCGTCGCATTCTATCATCGCAAAAGCTATC TTTGGACCGCTTCGAACGAGAGTGTGCGCCTCCGCGAGGCTGTGCAGAAG ACAAAGTGGATGAGGCTTCTGCGAACCCTAGAAAGACCTTGTCGTTGTTC TCAAAGGACGGGCCGTTGCGACGGTCGTTCCATCGAGTGAGCGAGCGCGC GACGGATGACGGAATCAACTTCGTCAACTCGCAATCGCAACGTCTACCGC CGAAAATCGCGAGGGAGAGACAACGGCAACAGAAAATGGCGCAAGCGGCG ATGAAACGCACGTCGAGAGCAGCGGGTGCTCTGGGAAGTTGTAAACTGAA CAGTGCCACGTTTGGCATGACGAATGAGGGGTATCATTCTTCTCCCAGAC TTGCGACGCATTTGTTGGAGCCGTTGCACGGTTTTGTGATGCCTTGCTCG GCATCGGAGGGCGCGGCGAGTGGTGGCGCGAGAAGTGAACGGATGGCGAT TGTTGATGAGCATGGCGATGAGGTGGGCAGCGAGAGTAGGGACGACGTTT TGCACGGCTGTTACTCGAGAGCACGCGCTGTGCCACTGGGATTGTAA
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Coding sequence (CDS) from alignment at NODE_2034_length_7137_cov_4.467357:13..2109+

>Gcaud3410.t1 ID=Gcaud3410.t1|Name=Gcaud3410.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2097bp|location=Sequence derived from alignment at NODE_2034_length_7137_cov_4.467357:13..2109+ (Gracilaria caudata M_176_S67 male)
ATGGCCGCCTCCCCGCCCACCGCCCGCGCGCGTGCGCGCGACGTCGATGC
CCGTCTGCTACTGGCGCACCACGCCCGCGCCACCTCGCCGCTGCGCTACA
CCGCCGTGGAGCCCGTGTGCATAGAGGGTTGGCTGGCCAAGGAGGGCCGC
TCCATCCGCACCCGCCGCAATCGATACTTCACGCTCAACGGCACCGTGCT
GGCGTCGCACCGCGCCAAGAGCGCTGCCCCCAGCTGGCATGTGTCCGTGG
CCGATGCGCTGGTGCAGCGCGGCATGCTGCCCAGGGAAATCCGCATCTCG
CTGCCCGGTCGCGCTTTGTCCTTTATCGCCCCGACGCAGCCGGCCTTCGA
GATGTGGATCGTCGCCCTGCGCCGTGCCTCGCTAGCCAGCACCCGCGTCG
ACGAGTACTACTCCATTGGCTCCCTCATTGGCGAGGGCATGAATGGTCAG
GTGCGCCTGGCTCACGATAAGATGACGGACGAGCCCGTCGCCATCAAGAT
GGTGCCGCGCTTGGGGCGCCAGAACGAGGCGCACTTTCTGGCCAGGGAGG
TGCAGATCATTCTGTCCATCTCGCATCCGAACATCGTCCGCACCATCGAT
GTGTTTGTGCGCACGCGTCGCATCCACTTCGTCATGGAATATCTCGCGGG
CGGGGAACTTTTCGACTTCATCTCACAGAACACCCATTTCACAGAGACCC
ATGCCGCCGCCGTCATGACCGACTTGCTCAACGCCTTGCACTACCTGCAT
TCGCGAAATATTGTTCACCGCGACGTCAAATTGGAGAACTTGTTGTGCGC
CAATACCACATGGCCTCTCAACGTCAAACTCGCCGATTTTGGTTTTGCGA
ACTATCTGCACGCTGACAACCGCCCCTCGCTCCACAGTTTTGTCGGCACT
CCGTACTACATTGCGCCTGAGATGCTACGGGGAGATCCGCACGGTTGTCC
CGTTGACGTATGGGCCAGCGGTGTCGTCATGTATATCCTTCTAAGTGGCA
AGTTTCCATTCGGTGGAAACAACGAGTCAGAATACTATCAACGTGTACTG
GCAAAGAATGCGTACTTTCCTTCCGAAGAGTGGGCCAACGTTTCTGAGGA
CGCCAAAAGCCTTGTCAGAGGTATGCTTTGTAAGGATCCGCGCAAGCGAC
TCACTGTGGAACAGTGCTTGGCACACCCGTGGCTGGCGCGCGCTCAACCA
GTGTTAAACACTACGGAACCACCCCTTTCCACGCCGGAACCGCTCGTAAC
GTCCGAGCCTAATCTACGGACCGCCACAGCGCTGAAGCATAACCGTACCA
AACGAGGCAAATGGCGCTATCTGGCCATGCTCAATCGCTCGCTTTCCGGC
GCACCGGAGGCCATTATGCCCGACCAGCTGCAAGCCGATTATGCGCGAGC
CAAACATACGCTGTCAGAATCTGCCACCGTGCCGTGCACGCGCTCTCCGC
CTAGTGATTGCGCGAGTAACTCCGTGGCCGCCACGGACACCGATCTGGTC
AATCGGCGGCCTAGTCTCATTCGTCGCATTCTATCATCGCAAAAGCTATC
TTTGGACCGCTTCGAACGAGAGTGTGCGCCTCCGCGAGGCTGTGCAGAAG
ACAAAGTGGATGAGGCTTCTGCGAACCCTAGAAAGACCTTGTCGTTGTTC
TCAAAGGACGGGCCGTTGCGACGGTCGTTCCATCGAGTGAGCGAGCGCGC
GACGGATGACGGAATCAACTTCGTCAACTCGCAATCGCAACGTCTACCGC
CGAAAATCGCGAGGGAGAGACAACGGCAACAGAAAATGGCGCAAGCGGCG
ATGAAACGCACGTCGAGAGCAGCGGGTGCTCTGGGAAGTTGTAAACTGAA
CAGTGCCACGTTTGGCATGACGAATGAGGGGTATCATTCTTCTCCCAGAC
TTGCGACGCATTTGTTGGAGCCGTTGCACGGTTTTGTGATGCCTTGCTCG
GCATCGGAGGGCGCGGCGAGTGGTGGCGCGAGAAGTGAACGGATGGCGAT
TGTTGATGAGCATGGCGATGAGGTGGGCAGCGAGAGTAGGGACGACGTTT
TGCACGGCTGTTACTCGAGAGCACGCGCTGTGCCACTGGGATTGTAA
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