Gcaud2202.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2202.t1
Unique Name	Gcaud2202.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	301

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_19_length_78712_cov_4.326007	contig	NODE_19_length_78712_cov_4.326007:61513..62415 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2711.XP_006486126.1
PFAMs	HAGH_C,Lactamase_B
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00004,RC00137
KEGG ko	ko:K01069
KEGG Reaction	R01736
KEGG Pathway	ko00620,map00620
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
Evalue	4.08e-89
EggNOG OGs	COG0491@1\|root,KOG0813@2759\|Eukaryota,37INA@33090\|Viridiplantae,3GDZI@35493\|Streptophyta
EC	3.1.2.6
Description	Hydroxyacylglutathione hydrolase
COG category	S
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2202	Gcaud2202	Gracilaria caudata M_176_S67 male	gene	NODE_19_length_78712_cov_4.326007 61513..62415 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2202.t1.stop1	Gcaud2202.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_19_length_78712_cov_4.326007 61513..61515 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2202.t1.CDS1	Gcaud2202.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_19_length_78712_cov_4.326007 61513..62415 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2202.t1.exon1	Gcaud2202.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_19_length_78712_cov_4.326007 61513..62415 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2202.t1.start1	Gcaud2202.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_19_length_78712_cov_4.326007 62413..62415 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2202.t1	Gcaud2202.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_19_length_78712_cov_4.326007 61513..62415 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_19_length_78712_cov_4.326007:61513..62415-
coding sequence from alignment at NODE_19_length_78712_cov_4.326007:61513..62415-

mRNA sequence

>Gcaud2202.t1 ID=Gcaud2202.t1|Name=Gcaud2202.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=301bp
MPPAFLSSLPLRVFHLTRRFAAVSRRPVEMSVSVVPLSSSVDVHVVPILS
DNFSYLIHDKSTSTAALVDPAEPEKLLQVAENLNANVTTALTTHHHWDHA
GGNIQLSKLVPDVEIVGSAYEAADGVTKRLESGNSHLLKGSSLSVFALNT
PCHTQGHLCFVTDTAKKAVFTGDTLFVAGCGKFFEGSASDMQKSLNSTLA
SLPDDTLVFCGHEYTVSNLLFAVSVEPNNQSTVGKLAWAREQVSKGTPTV
PSNIGDEKKFNPFMRTNNPELAETVGVTHGDPVAVMKALRERKNSFRPPK
*

spliced messenger RNA

>Gcaud2202.t1 ID=Gcaud2202.t1|Name=Gcaud2202.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=903bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:61513..62415- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCCGCATTTCTCTCTTCGCTCCCTCTGCGAGTGTTCCACTTGAC
ACGCCGATTCGCCGCAGTCTCGCGCCGCCCCGTAGAAATGAGCGTCTCGG
TTGTGCCGCTCAGTTCCTCCGTTGACGTTCACGTCGTCCCGATATTGTCC
GATAATTTTTCCTACCTCATTCATGACAAGTCCACCTCGACCGCCGCTCT
AGTCGACCCTGCAGAGCCAGAGAAGCTTTTGCAAGTCGCCGAAAATCTTA
ACGCAAACGTAACGACTGCCCTCACTACCCACCACCATTGGGATCATGCT
GGGGGAAACATACAGCTCTCAAAGCTCGTTCCAGACGTGGAGATTGTCGG
CTCTGCCTATGAAGCAGCTGATGGTGTCACAAAGCGACTTGAATCTGGTA
ATTCTCACCTCTTAAAAGGCTCCTCGCTCTCTGTCTTTGCGCTTAACACT
CCCTGTCACACTCAGGGGCACCTCTGCTTCGTCACCGACACCGCCAAGAA
GGCAGTGTTCACTGGCGACACTCTGTTTGTTGCCGGGTGTGGAAAGTTTT
TTGAGGGTTCTGCATCTGACATGCAGAAGTCCTTGAATTCTACCCTAGCT
TCCCTGCCTGACGACACTCTCGTGTTTTGTGGTCATGAGTACACTGTTTC
CAATTTGCTGTTTGCCGTTTCTGTTGAGCCCAATAACCAAAGCACCGTAG
GAAAGCTTGCCTGGGCAAGAGAGCAAGTCTCCAAAGGAACTCCGACAGTT
CCGAGCAATATTGGTGACGAGAAGAAGTTTAATCCGTTCATGAGAACAAA
CAACCCCGAACTTGCCGAGACGGTTGGCGTAACTCATGGAGATCCTGTTG
CGGTAATGAAAGCATTGAGAGAGAGAAAAAACTCTTTCCGACCTCCAAAA
TGA

protein sequence of Gcaud2202.t1

>Gcaud2202.t1 ID=Gcaud2202.t1|Name=Gcaud2202.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=301bp
MPPAFLSSLPLRVFHLTRRFAAVSRRPVEMSVSVVPLSSSVDVHVVPILS
DNFSYLIHDKSTSTAALVDPAEPEKLLQVAENLNANVTTALTTHHHWDHA
GGNIQLSKLVPDVEIVGSAYEAADGVTKRLESGNSHLLKGSSLSVFALNT
PCHTQGHLCFVTDTAKKAVFTGDTLFVAGCGKFFEGSASDMQKSLNSTLA
SLPDDTLVFCGHEYTVSNLLFAVSVEPNNQSTVGKLAWAREQVSKGTPTV
PSNIGDEKKFNPFMRTNNPELAETVGVTHGDPVAVMKALRERKNSFRPPK
*

mRNA from alignment at NODE_19_length_78712_cov_4.326007:61513..62415-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2202.t1 ID=Gcaud2202.t1|Name=Gcaud2202.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=903bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:61513..62415- (Gracilaria caudata M_176_S67 male)
ATGCCGCCCGCATTTCTCTCTTCGCTCCCTCTGCGAGTGTTCCACTTGAC
ACGCCGATTCGCCGCAGTCTCGCGCCGCCCCGTAGAAATGAGCGTCTCGG
TTGTGCCGCTCAGTTCCTCCGTTGACGTTCACGTCGTCCCGATATTGTCC
GATAATTTTTCCTACCTCATTCATGACAAGTCCACCTCGACCGCCGCTCT
AGTCGACCCTGCAGAGCCAGAGAAGCTTTTGCAAGTCGCCGAAAATCTTA
ACGCAAACGTAACGACTGCCCTCACTACCCACCACCATTGGGATCATGCT
GGGGGAAACATACAGCTCTCAAAGCTCGTTCCAGACGTGGAGATTGTCGG
CTCTGCCTATGAAGCAGCTGATGGTGTCACAAAGCGACTTGAATCTGGTA
ATTCTCACCTCTTAAAAGGCTCCTCGCTCTCTGTCTTTGCGCTTAACACT
CCCTGTCACACTCAGGGGCACCTCTGCTTCGTCACCGACACCGCCAAGAA
GGCAGTGTTCACTGGCGACACTCTGTTTGTTGCCGGGTGTGGAAAGTTTT
TTGAGGGTTCTGCATCTGACATGCAGAAGTCCTTGAATTCTACCCTAGCT
TCCCTGCCTGACGACACTCTCGTGTTTTGTGGTCATGAGTACACTGTTTC
CAATTTGCTGTTTGCCGTTTCTGTTGAGCCCAATAACCAAAGCACCGTAG
GAAAGCTTGCCTGGGCAAGAGAGCAAGTCTCCAAAGGAACTCCGACAGTT
CCGAGCAATATTGGTGACGAGAAGAAGTTTAATCCGTTCATGAGAACAAA
CAACCCCGAACTTGCCGAGACGGTTGGCGTAACTCATGGAGATCCTGTTG
CGGTAATGAAAGCATTGAGAGAGAGAAAAAACTCTTTCCGACCTCCAAAA
TGA

Coding sequence (CDS) from alignment at NODE_19_length_78712_cov_4.326007:61513..62415-

>Gcaud2202.t1 ID=Gcaud2202.t1|Name=Gcaud2202.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=903bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:61513..62415- (Gracilaria caudata M_176_S67 male)
ATGCCGCCCGCATTTCTCTCTTCGCTCCCTCTGCGAGTGTTCCACTTGAC
ACGCCGATTCGCCGCAGTCTCGCGCCGCCCCGTAGAAATGAGCGTCTCGG
TTGTGCCGCTCAGTTCCTCCGTTGACGTTCACGTCGTCCCGATATTGTCC
GATAATTTTTCCTACCTCATTCATGACAAGTCCACCTCGACCGCCGCTCT
AGTCGACCCTGCAGAGCCAGAGAAGCTTTTGCAAGTCGCCGAAAATCTTA
ACGCAAACGTAACGACTGCCCTCACTACCCACCACCATTGGGATCATGCT
GGGGGAAACATACAGCTCTCAAAGCTCGTTCCAGACGTGGAGATTGTCGG
CTCTGCCTATGAAGCAGCTGATGGTGTCACAAAGCGACTTGAATCTGGTA
ATTCTCACCTCTTAAAAGGCTCCTCGCTCTCTGTCTTTGCGCTTAACACT
CCCTGTCACACTCAGGGGCACCTCTGCTTCGTCACCGACACCGCCAAGAA
GGCAGTGTTCACTGGCGACACTCTGTTTGTTGCCGGGTGTGGAAAGTTTT
TTGAGGGTTCTGCATCTGACATGCAGAAGTCCTTGAATTCTACCCTAGCT
TCCCTGCCTGACGACACTCTCGTGTTTTGTGGTCATGAGTACACTGTTTC
CAATTTGCTGTTTGCCGTTTCTGTTGAGCCCAATAACCAAAGCACCGTAG
GAAAGCTTGCCTGGGCAAGAGAGCAAGTCTCCAAAGGAACTCCGACAGTT
CCGAGCAATATTGGTGACGAGAAGAAGTTTAATCCGTTCATGAGAACAAA
CAACCCCGAACTTGCCGAGACGGTTGGCGTAACTCATGGAGATCCTGTTG
CGGTAATGAAAGCATTGAGAGAGAGAAAAAACTCTTTCCGACCTCCAAAA
TGA