Gcaud2198.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2198.t1
Unique Name	Gcaud2198.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	393

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_19_length_78712_cov_4.326007	contig	NODE_19_length_78712_cov_4.326007:45337..46515 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	159749.K0SQM3
PFAMs	S1
Max annot lvl	2836\|Bacillariophyta
Evalue	3.15e-33
EggNOG OGs	COG0264@1\|root,KOG1071@2759\|Eukaryota,2XEYE@2836\|Bacillariophyta
Description	Ribosomal protein S1-like RNA-binding domain
COG category	J

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2198	Gcaud2198	Gracilaria caudata M_176_S67 male	gene	NODE_19_length_78712_cov_4.326007 45337..46515 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2198.t1.start1	Gcaud2198.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_19_length_78712_cov_4.326007 45337..45339 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2198.t1.CDS1	Gcaud2198.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_19_length_78712_cov_4.326007 45337..46515 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2198.t1.exon1	Gcaud2198.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_19_length_78712_cov_4.326007 45337..46515 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2198.t1.stop1	Gcaud2198.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_19_length_78712_cov_4.326007 46513..46515 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2198.t1	Gcaud2198.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_19_length_78712_cov_4.326007 45337..46515 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_19_length_78712_cov_4.326007:45337..46515+
coding sequence from alignment at NODE_19_length_78712_cov_4.326007:45337..46515+

mRNA sequence

>Gcaud2198.t1 ID=Gcaud2198.t1|Name=Gcaud2198.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=393bp
MSPSAFVVHLTAAPFRLSSSPSSFCTRRALPLKLRPASRYATLRTIRACA
PSEPAQPQDASPQNGVETEGSDAQPPTQIDAVADEQATPLVDETAEQTAE
VPVEVTAEATSEGTADENAEGRAEENAEEPAEETDTDAKPRPEQRRRRRR
TRQKREVTLPLEEMTVGMELEGVVKTVMEYGAFIGETGAPTDGLLHVSQL
RASFVENVSDVVKVGDKITVRVLSVDLKKGNFSLTMKTAEELESGDTKRE
AAANRKRDLSRKWDAFSYDDKKFVDAKVISITDFGAFCQLIDEQGQQIEC
PTDGLIHISEVSEQRVSKVSDVLSIGQSVKVRVVGADRKRNRISLSMKGP
NASPRQKQSSTPQDIEEATKNQPVFKTAFELAFEKAEASLSQ*

spliced messenger RNA

>Gcaud2198.t1 ID=Gcaud2198.t1|Name=Gcaud2198.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1179bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:45337..46515+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCGTCCGCCTTCGTCGTTCATCTCACAGCTGCCCCGTTTCGCCT
CTCCTCTTCGCCGTCTTCCTTCTGCACGCGTCGCGCACTCCCACTCAAGC
TTCGTCCTGCCTCGCGTTACGCAACGCTTCGCACGATACGCGCCTGCGCG
CCCTCAGAGCCCGCTCAACCTCAGGACGCATCGCCGCAGAATGGCGTTGA
GACGGAGGGGAGCGATGCTCAGCCTCCGACGCAGATCGACGCTGTTGCGG
ATGAGCAAGCCACTCCGCTCGTGGACGAGACTGCTGAACAGACCGCCGAG
GTGCCTGTCGAAGTGACTGCTGAAGCGACTAGCGAAGGAACTGCCGATGA
GAATGCGGAAGGGAGAGCGGAGGAAAACGCGGAAGAGCCCGCGGAAGAGA
CTGATACCGACGCTAAACCGCGCCCGGAACAACGCCGCCGCCGACGCCGC
ACTCGTCAGAAACGGGAGGTTACTCTGCCGCTCGAAGAGATGACCGTTGG
CATGGAGCTCGAGGGTGTGGTTAAGACAGTGATGGAATACGGCGCCTTTA
TTGGAGAGACTGGTGCTCCCACTGATGGTTTGTTGCATGTTTCGCAACTT
CGCGCCAGCTTTGTCGAAAATGTGTCCGATGTAGTCAAAGTCGGTGATAA
GATCACCGTCAGAGTGCTTAGTGTTGATCTCAAAAAAGGGAACTTTTCGT
TGACCATGAAGACTGCCGAAGAACTTGAGAGCGGAGACACTAAGCGAGAA
GCTGCTGCCAATCGCAAGAGAGATTTGAGCAGGAAATGGGATGCATTTTC
CTATGATGATAAGAAGTTTGTTGATGCCAAGGTTATTTCCATTACTGATT
TTGGCGCCTTTTGTCAGCTGATAGATGAACAGGGACAACAGATCGAATGT
CCAACAGATGGTTTGATTCATATTTCTGAAGTCAGCGAACAACGAGTAAG
CAAGGTTTCTGATGTGTTGAGTATAGGACAGAGTGTCAAGGTCAGAGTTG
TTGGAGCCGATCGTAAGAGAAATAGGATTTCTTTGTCCATGAAGGGTCCT
AATGCTTCACCGCGGCAGAAACAAAGTAGTACGCCACAAGATATAGAAGA
AGCTACGAAGAATCAGCCGGTGTTTAAGACTGCTTTCGAATTGGCGTTTG
AAAAGGCTGAGGCTTCCTTGAGTCAGTAG

protein sequence of Gcaud2198.t1

>Gcaud2198.t1 ID=Gcaud2198.t1|Name=Gcaud2198.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=393bp
MSPSAFVVHLTAAPFRLSSSPSSFCTRRALPLKLRPASRYATLRTIRACA
PSEPAQPQDASPQNGVETEGSDAQPPTQIDAVADEQATPLVDETAEQTAE
VPVEVTAEATSEGTADENAEGRAEENAEEPAEETDTDAKPRPEQRRRRRR
TRQKREVTLPLEEMTVGMELEGVVKTVMEYGAFIGETGAPTDGLLHVSQL
RASFVENVSDVVKVGDKITVRVLSVDLKKGNFSLTMKTAEELESGDTKRE
AAANRKRDLSRKWDAFSYDDKKFVDAKVISITDFGAFCQLIDEQGQQIEC
PTDGLIHISEVSEQRVSKVSDVLSIGQSVKVRVVGADRKRNRISLSMKGP
NASPRQKQSSTPQDIEEATKNQPVFKTAFELAFEKAEASLSQ*

mRNA from alignment at NODE_19_length_78712_cov_4.326007:45337..46515+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2198.t1 ID=Gcaud2198.t1|Name=Gcaud2198.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1179bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:45337..46515+ (Gracilaria caudata M_176_S67 male)
ATGTCGCCGTCCGCCTTCGTCGTTCATCTCACAGCTGCCCCGTTTCGCCT
CTCCTCTTCGCCGTCTTCCTTCTGCACGCGTCGCGCACTCCCACTCAAGC
TTCGTCCTGCCTCGCGTTACGCAACGCTTCGCACGATACGCGCCTGCGCG
CCCTCAGAGCCCGCTCAACCTCAGGACGCATCGCCGCAGAATGGCGTTGA
GACGGAGGGGAGCGATGCTCAGCCTCCGACGCAGATCGACGCTGTTGCGG
ATGAGCAAGCCACTCCGCTCGTGGACGAGACTGCTGAACAGACCGCCGAG
GTGCCTGTCGAAGTGACTGCTGAAGCGACTAGCGAAGGAACTGCCGATGA
GAATGCGGAAGGGAGAGCGGAGGAAAACGCGGAAGAGCCCGCGGAAGAGA
CTGATACCGACGCTAAACCGCGCCCGGAACAACGCCGCCGCCGACGCCGC
ACTCGTCAGAAACGGGAGGTTACTCTGCCGCTCGAAGAGATGACCGTTGG
CATGGAGCTCGAGGGTGTGGTTAAGACAGTGATGGAATACGGCGCCTTTA
TTGGAGAGACTGGTGCTCCCACTGATGGTTTGTTGCATGTTTCGCAACTT
CGCGCCAGCTTTGTCGAAAATGTGTCCGATGTAGTCAAAGTCGGTGATAA
GATCACCGTCAGAGTGCTTAGTGTTGATCTCAAAAAAGGGAACTTTTCGT
TGACCATGAAGACTGCCGAAGAACTTGAGAGCGGAGACACTAAGCGAGAA
GCTGCTGCCAATCGCAAGAGAGATTTGAGCAGGAAATGGGATGCATTTTC
CTATGATGATAAGAAGTTTGTTGATGCCAAGGTTATTTCCATTACTGATT
TTGGCGCCTTTTGTCAGCTGATAGATGAACAGGGACAACAGATCGAATGT
CCAACAGATGGTTTGATTCATATTTCTGAAGTCAGCGAACAACGAGTAAG
CAAGGTTTCTGATGTGTTGAGTATAGGACAGAGTGTCAAGGTCAGAGTTG
TTGGAGCCGATCGTAAGAGAAATAGGATTTCTTTGTCCATGAAGGGTCCT
AATGCTTCACCGCGGCAGAAACAAAGTAGTACGCCACAAGATATAGAAGA
AGCTACGAAGAATCAGCCGGTGTTTAAGACTGCTTTCGAATTGGCGTTTG
AAAAGGCTGAGGCTTCCTTGAGTCAGTAG

Coding sequence (CDS) from alignment at NODE_19_length_78712_cov_4.326007:45337..46515+

>Gcaud2198.t1 ID=Gcaud2198.t1|Name=Gcaud2198.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1179bp|location=Sequence derived from alignment at NODE_19_length_78712_cov_4.326007:45337..46515+ (Gracilaria caudata M_176_S67 male)
ATGTCGCCGTCCGCCTTCGTCGTTCATCTCACAGCTGCCCCGTTTCGCCT
CTCCTCTTCGCCGTCTTCCTTCTGCACGCGTCGCGCACTCCCACTCAAGC
TTCGTCCTGCCTCGCGTTACGCAACGCTTCGCACGATACGCGCCTGCGCG
CCCTCAGAGCCCGCTCAACCTCAGGACGCATCGCCGCAGAATGGCGTTGA
GACGGAGGGGAGCGATGCTCAGCCTCCGACGCAGATCGACGCTGTTGCGG
ATGAGCAAGCCACTCCGCTCGTGGACGAGACTGCTGAACAGACCGCCGAG
GTGCCTGTCGAAGTGACTGCTGAAGCGACTAGCGAAGGAACTGCCGATGA
GAATGCGGAAGGGAGAGCGGAGGAAAACGCGGAAGAGCCCGCGGAAGAGA
CTGATACCGACGCTAAACCGCGCCCGGAACAACGCCGCCGCCGACGCCGC
ACTCGTCAGAAACGGGAGGTTACTCTGCCGCTCGAAGAGATGACCGTTGG
CATGGAGCTCGAGGGTGTGGTTAAGACAGTGATGGAATACGGCGCCTTTA
TTGGAGAGACTGGTGCTCCCACTGATGGTTTGTTGCATGTTTCGCAACTT
CGCGCCAGCTTTGTCGAAAATGTGTCCGATGTAGTCAAAGTCGGTGATAA
GATCACCGTCAGAGTGCTTAGTGTTGATCTCAAAAAAGGGAACTTTTCGT
TGACCATGAAGACTGCCGAAGAACTTGAGAGCGGAGACACTAAGCGAGAA
GCTGCTGCCAATCGCAAGAGAGATTTGAGCAGGAAATGGGATGCATTTTC
CTATGATGATAAGAAGTTTGTTGATGCCAAGGTTATTTCCATTACTGATT
TTGGCGCCTTTTGTCAGCTGATAGATGAACAGGGACAACAGATCGAATGT
CCAACAGATGGTTTGATTCATATTTCTGAAGTCAGCGAACAACGAGTAAG
CAAGGTTTCTGATGTGTTGAGTATAGGACAGAGTGTCAAGGTCAGAGTTG
TTGGAGCCGATCGTAAGAGAAATAGGATTTCTTTGTCCATGAAGGGTCCT
AATGCTTCACCGCGGCAGAAACAAAGTAGTACGCCACAAGATATAGAAGA
AGCTACGAAGAATCAGCCGGTGTTTAAGACTGCTTTCGAATTGGCGTTTG
AAAAGGCTGAGGCTTCCTTGAGTCAGTAG