Gcaud1919.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1919.t1
Unique NameGcaud1919.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length314
Homology
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BLAST of Gcaud1919.t1 vs. uniprot
Match: A0A2V3ISL0_9FLOR (EF-hand domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISL0_9FLOR)

HSP 1 Score: 349 bits (896), Expect = 2.270e-117
Identity = 193/310 (62.26%), Postives = 231/310 (74.52%), Query Frame = 0 
Query:    1 MSKDAKLSTIASDLHSLFVKLASACLKEEPLNVEEFCLKWLASHHGVDLESEFPITRVQSADFREEKKSKSKXXXXXXXXXXXXPVNAEDYXXXXXXXXXXXXXXXGDSKDSDSGPETIGRVKTVAADAQLSAPACSLFSTAVISDQELERKTILYRNDDRMKSLFRAWDGDGSGRVDFVELVLALHKFEDVASAGIDIQVASDALLQFVESDTERELNLTEFTKVIILFALNNFHADFENVADHMLAVATSTSEAAVLRAACGADVSDIQAADKEEQAFLREAAMGMEQHVTDNIQKMRVQRTPRNSST 310
            MS+ +K + I S+L  LF +L  ACL+E P +V +FCL+WLA  +G   E +  IT +QS D  + K  + +                 DY                DSKDS SG   IGRV+TVA+++++   +C+LFSTAVIS +ELERKT LY+ D+RMKSLFRAWDGDGSGRVDFVELVLALHKFEDVASAGIDIQVASDAL+QFVESDTERELNL EFT+VII+FALN FH DF+NVADHMLAVATSTSEAAVL+AA GADVS+IQAADKEEQ FLR+ A G+EQ+VTDNI K+RVQRTPR+SS+
Sbjct:    1 MSRVSKRNKIKSELQGLFAELERACLEELPEDVGQFCLQWLADRNGFHFERKATITCIQSTDSIDNKTFRPQTSRSPKATGNDLQ-RVADYNTEDSGDETDGFQSDCDSKDSGSGSVVIGRVETVASESEVGTASCALFSTAVISPEELERKTSLYQKDERMKSLFRAWDGDGSGRVDFVELVLALHKFEDVASAGIDIQVASDALVQFVESDTERELNLAEFTRVIIIFALNCFHDDFDNVADHMLAVATSTSEAAVLQAASGADVSEIQAADKEEQEFLRQTAKGIEQNVTDNILKIRVQRTPRSSSS 309
The following BLAST results are available for this feature:
BLAST of Gcaud1919.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3ISL0_9FLOR2.270e-11762.26EF-hand domain-containing protein n=1 Tax=Gracilar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.238.10coord: 101..255
e-value: 1.2E-5
score: 27.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..121
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..117
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 170..182
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 157..192
score: 11.723866
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 31..230

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_105_length_50300_cov_4.471768contigNODE_105_length_50300_cov_4.471768:7346..8287 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1919.t1Gcaud1919.t1Gracilaria caudata M_176_S67 malemRNANODE_105_length_50300_cov_4.471768 7346..8287 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1919.t1 ID=Gcaud1919.t1|Name=Gcaud1919.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=314bp
MSKDAKLSTIASDLHSLFVKLASACLKEEPLNVEEFCLKWLASHHGVDLE
SEFPITRVQSADFREEKKSKSKKTRNRGKKNGKKPVNAEDYTTDDDNNHS
DVFHTDGDSKDSDSGPETIGRVKTVAADAQLSAPACSLFSTAVISDQELE
RKTILYRNDDRMKSLFRAWDGDGSGRVDFVELVLALHKFEDVASAGIDIQ
VASDALLQFVESDTERELNLTEFTKVIILFALNNFHADFENVADHMLAVA
TSTSEAAVLRAACGADVSDIQAADKEEQAFLREAAMGMEQHVTDNIQKMR
VQRTPRNSSTSNN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018247EF_Hand_1_Ca_BS
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair