Gcaud1940.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1940.t1
Unique Name	Gcaud1940.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	638

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_105_length_50300_cov_4.471768	contig	NODE_105_length_50300_cov_4.471768:46470..48383 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3988.XP_002519475.1
PFAMs	zf-RING_2
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K15691
GOs	GO:0000075,GO:0000077,GO:0000278,GO:0000724,GO:0000725,GO:0002039,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006302,GO:0006310,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007093,GO:0007346,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0010564,GO:0010948,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0022402,GO:0031297,GO:0031570,GO:0031571,GO:0031974,GO:0031981,GO:0032446,GO:0033554,GO:0034641,GO:0034645,GO:0036211,GO:0036297,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045005,GO:0045786,GO:0045930,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051726,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0080134,GO:0080135,GO:0090304,GO:0090734,GO:0097371,GO:0140096,GO:1901360,GO:1901564,GO:1901576,GO:1901976,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902806,GO:1902807,GO:1903047,GO:2000001,GO:2000045,GO:2000134,GO:2001020
Evalue	1.91e-22
EggNOG OGs	KOG1645@1\|root,KOG1645@2759\|Eukaryota,37QVD@33090\|Viridiplantae,3GF8W@35493\|Streptophyta,4JNNT@91835\|fabids
EC	2.3.2.27
Description	E3 ubiquitin-protein ligase
COG category	O
BRITE	ko00000,ko01000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1940	Gcaud1940	Gracilaria caudata M_176_S67 male	gene	NODE_105_length_50300_cov_4.471768 46470..48383 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1940.t1.start1	Gcaud1940.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_105_length_50300_cov_4.471768 46470..46472 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1940.t1.CDS1	Gcaud1940.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_105_length_50300_cov_4.471768 46470..48383 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1940.t1.exon1	Gcaud1940.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_105_length_50300_cov_4.471768 46470..48383 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1940.t1.stop1	Gcaud1940.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_105_length_50300_cov_4.471768 48381..48383 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1940.t1	Gcaud1940.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_105_length_50300_cov_4.471768 46470..48383 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_105_length_50300_cov_4.471768:46470..48383+
coding sequence from alignment at NODE_105_length_50300_cov_4.471768:46470..48383+

mRNA sequence

>Gcaud1940.t1 ID=Gcaud1940.t1|Name=Gcaud1940.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=638bp
MPSPIRLPNGSLRPSSSEQVRELPTERRRVEQSAVLNLIVEDFFSTEQVH
IGPAPNPPFAVDEADPNAQADVEERNANGSIVTVRSSQDSEEPSPSPVIK
RRRKNKTLKEPEAEKGGGTSPQEDGNCCTICLEPWASSGPHQVCCMPCGH
LFGYSCIKEWIRGGHSRKRECPTCKTPARVKDLRYLFGLPSRLEVSDVTE
IQRLREELQREKISHETTRIKYEDTKKLAKIYREQMRDLQRQVKPSVQTF
GHEHNLQRVEPVDNIRLVSVNRTTGGSLAVAVDQDASYLFNERVPGDRSR
HRIGRVDIGRPNVPMYSQYPTEKRVNCIEVCRHTCRADHRHVAVASTDNS
VSILTPTLQRATTLRLPRIPLSCSWLSSRPHLIAIGLVSGEVLMYDIRQT
STHMYESILSRNQGFRAVHSLEEVAVNDSHDSSAVLAASPHGVFGISFDG
FMGTPNVYEVKGGVPEDWAPTSFTVSGNMIAVAARRRGTAGCASQEMGCS
LSMHRGLVKEGQDLKFGPSLGEPVYTSSQSVPFVHCGIVEGNEGYVDTIL
AYPDKHASSKLSVWAYKEDVNEGVPSWKGQEVVSHSQIQSSSVADVRAAA
GLLLPRFAKISGVPDGSRGVFVTVGDDIIRVFAAGRY*

spliced messenger RNA

>Gcaud1940.t1 ID=Gcaud1940.t1|Name=Gcaud1940.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1914bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:46470..48383+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCTCCGATACGCCTTCCAAACGGTTCCCTGCGACCTTCCTCCTC
CGAACAAGTACGAGAGCTGCCGACAGAGAGAAGACGAGTCGAGCAATCTG
CTGTATTAAACCTGATTGTAGAAGATTTTTTTAGTACAGAACAAGTGCAT
ATTGGACCAGCCCCTAATCCACCCTTTGCTGTCGATGAAGCTGACCCAAA
TGCTCAAGCTGACGTCGAAGAAAGAAATGCGAACGGAAGCATTGTCACTG
TACGATCTTCGCAGGACTCCGAGGAACCCAGCCCATCCCCCGTAATTAAG
CGCCGCCGAAAAAACAAAACGCTCAAGGAACCAGAAGCTGAAAAGGGGGG
TGGAACCTCTCCCCAAGAAGATGGCAACTGCTGCACAATATGTTTGGAGC
CTTGGGCAAGTTCTGGTCCTCACCAAGTGTGTTGCATGCCGTGCGGTCAT
CTGTTCGGATACAGTTGCATAAAAGAATGGATTCGTGGCGGCCACTCTCG
GAAACGGGAATGTCCAACGTGTAAAACGCCTGCTCGCGTGAAGGACTTGA
GATATCTTTTCGGTCTTCCATCACGGCTGGAGGTCTCTGATGTTACGGAA
ATACAGCGACTGCGTGAAGAACTACAGCGGGAGAAGATATCTCATGAGAC
TACAAGGATAAAATATGAGGATACAAAGAAACTGGCGAAGATATACCGCG
AGCAGATGCGAGACCTCCAACGCCAGGTAAAGCCTTCTGTTCAAACATTT
GGGCATGAGCATAATCTACAACGTGTTGAACCTGTGGACAACATCCGTCT
GGTGTCAGTGAATCGAACTACTGGTGGTTCTCTAGCGGTTGCAGTCGATC
AAGACGCATCATATTTATTCAACGAACGTGTGCCTGGGGACAGATCGCGA
CATCGAATAGGCCGCGTAGACATTGGAAGACCGAATGTACCAATGTACTC
ACAATATCCAACTGAGAAACGCGTAAACTGCATCGAAGTGTGTCGTCACA
CATGCAGAGCGGATCATAGACATGTTGCAGTAGCAAGCACTGATAACAGT
GTTAGCATCTTGACTCCAACTCTTCAGCGCGCAACAACTCTTCGGCTGCC
CCGGATTCCGCTGTCTTGTTCTTGGCTTTCCAGTCGCCCACACCTGATAG
CAATTGGACTCGTCTCAGGTGAAGTTTTAATGTACGACATAAGGCAAACT
TCGACGCATATGTACGAATCAATATTGTCTCGCAATCAAGGATTCCGAGC
CGTTCATTCTTTAGAGGAAGTCGCAGTTAACGACTCACACGACTCATCCG
CGGTTTTAGCAGCCTCACCACACGGCGTATTTGGTATCTCGTTTGATGGA
TTCATGGGCACGCCAAACGTTTACGAGGTAAAAGGTGGTGTGCCCGAGGA
TTGGGCTCCCACGAGTTTCACTGTGAGTGGGAACATGATCGCTGTGGCTG
CAAGAAGGCGTGGTACTGCAGGTTGCGCATCTCAAGAAATGGGATGTTCG
TTGTCCATGCACAGGGGTCTCGTTAAGGAAGGACAAGACCTGAAGTTTGG
TCCTTCACTCGGCGAGCCAGTATACACCTCCTCACAAAGTGTACCATTCG
TGCATTGTGGTATTGTTGAAGGAAACGAAGGCTATGTAGATACGATACTG
GCATACCCAGATAAGCATGCTTCGAGTAAGCTGAGTGTGTGGGCTTACAA
GGAAGATGTAAATGAGGGTGTCCCGAGCTGGAAGGGGCAAGAAGTTGTAT
CTCACTCCCAAATTCAAAGTTCGAGTGTTGCTGATGTTCGAGCAGCAGCA
GGACTTTTGCTTCCACGATTTGCAAAGATAAGCGGTGTACCTGATGGGAG
TCGTGGAGTTTTTGTTACTGTCGGCGATGATATCATTCGAGTTTTTGCAG
CAGGAAGGTATTGA

protein sequence of Gcaud1940.t1

>Gcaud1940.t1 ID=Gcaud1940.t1|Name=Gcaud1940.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=638bp
MPSPIRLPNGSLRPSSSEQVRELPTERRRVEQSAVLNLIVEDFFSTEQVH
IGPAPNPPFAVDEADPNAQADVEERNANGSIVTVRSSQDSEEPSPSPVIK
RRRKNKTLKEPEAEKGGGTSPQEDGNCCTICLEPWASSGPHQVCCMPCGH
LFGYSCIKEWIRGGHSRKRECPTCKTPARVKDLRYLFGLPSRLEVSDVTE
IQRLREELQREKISHETTRIKYEDTKKLAKIYREQMRDLQRQVKPSVQTF
GHEHNLQRVEPVDNIRLVSVNRTTGGSLAVAVDQDASYLFNERVPGDRSR
HRIGRVDIGRPNVPMYSQYPTEKRVNCIEVCRHTCRADHRHVAVASTDNS
VSILTPTLQRATTLRLPRIPLSCSWLSSRPHLIAIGLVSGEVLMYDIRQT
STHMYESILSRNQGFRAVHSLEEVAVNDSHDSSAVLAASPHGVFGISFDG
FMGTPNVYEVKGGVPEDWAPTSFTVSGNMIAVAARRRGTAGCASQEMGCS
LSMHRGLVKEGQDLKFGPSLGEPVYTSSQSVPFVHCGIVEGNEGYVDTIL
AYPDKHASSKLSVWAYKEDVNEGVPSWKGQEVVSHSQIQSSSVADVRAAA
GLLLPRFAKISGVPDGSRGVFVTVGDDIIRVFAAGRY*

mRNA from alignment at NODE_105_length_50300_cov_4.471768:46470..48383+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1940.t1 ID=Gcaud1940.t1|Name=Gcaud1940.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1914bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:46470..48383+ (Gracilaria caudata M_176_S67 male)
ATGCCGTCTCCGATACGCCTTCCAAACGGTTCCCTGCGACCTTCCTCCTC
CGAACAAGTACGAGAGCTGCCGACAGAGAGAAGACGAGTCGAGCAATCTG
CTGTATTAAACCTGATTGTAGAAGATTTTTTTAGTACAGAACAAGTGCAT
ATTGGACCAGCCCCTAATCCACCCTTTGCTGTCGATGAAGCTGACCCAAA
TGCTCAAGCTGACGTCGAAGAAAGAAATGCGAACGGAAGCATTGTCACTG
TACGATCTTCGCAGGACTCCGAGGAACCCAGCCCATCCCCCGTAATTAAG
CGCCGCCGAAAAAACAAAACGCTCAAGGAACCAGAAGCTGAAAAGGGGGG
TGGAACCTCTCCCCAAGAAGATGGCAACTGCTGCACAATATGTTTGGAGC
CTTGGGCAAGTTCTGGTCCTCACCAAGTGTGTTGCATGCCGTGCGGTCAT
CTGTTCGGATACAGTTGCATAAAAGAATGGATTCGTGGCGGCCACTCTCG
GAAACGGGAATGTCCAACGTGTAAAACGCCTGCTCGCGTGAAGGACTTGA
GATATCTTTTCGGTCTTCCATCACGGCTGGAGGTCTCTGATGTTACGGAA
ATACAGCGACTGCGTGAAGAACTACAGCGGGAGAAGATATCTCATGAGAC
TACAAGGATAAAATATGAGGATACAAAGAAACTGGCGAAGATATACCGCG
AGCAGATGCGAGACCTCCAACGCCAGGTAAAGCCTTCTGTTCAAACATTT
GGGCATGAGCATAATCTACAACGTGTTGAACCTGTGGACAACATCCGTCT
GGTGTCAGTGAATCGAACTACTGGTGGTTCTCTAGCGGTTGCAGTCGATC
AAGACGCATCATATTTATTCAACGAACGTGTGCCTGGGGACAGATCGCGA
CATCGAATAGGCCGCGTAGACATTGGAAGACCGAATGTACCAATGTACTC
ACAATATCCAACTGAGAAACGCGTAAACTGCATCGAAGTGTGTCGTCACA
CATGCAGAGCGGATCATAGACATGTTGCAGTAGCAAGCACTGATAACAGT
GTTAGCATCTTGACTCCAACTCTTCAGCGCGCAACAACTCTTCGGCTGCC
CCGGATTCCGCTGTCTTGTTCTTGGCTTTCCAGTCGCCCACACCTGATAG
CAATTGGACTCGTCTCAGGTGAAGTTTTAATGTACGACATAAGGCAAACT
TCGACGCATATGTACGAATCAATATTGTCTCGCAATCAAGGATTCCGAGC
CGTTCATTCTTTAGAGGAAGTCGCAGTTAACGACTCACACGACTCATCCG
CGGTTTTAGCAGCCTCACCACACGGCGTATTTGGTATCTCGTTTGATGGA
TTCATGGGCACGCCAAACGTTTACGAGGTAAAAGGTGGTGTGCCCGAGGA
TTGGGCTCCCACGAGTTTCACTGTGAGTGGGAACATGATCGCTGTGGCTG
CAAGAAGGCGTGGTACTGCAGGTTGCGCATCTCAAGAAATGGGATGTTCG
TTGTCCATGCACAGGGGTCTCGTTAAGGAAGGACAAGACCTGAAGTTTGG
TCCTTCACTCGGCGAGCCAGTATACACCTCCTCACAAAGTGTACCATTCG
TGCATTGTGGTATTGTTGAAGGAAACGAAGGCTATGTAGATACGATACTG
GCATACCCAGATAAGCATGCTTCGAGTAAGCTGAGTGTGTGGGCTTACAA
GGAAGATGTAAATGAGGGTGTCCCGAGCTGGAAGGGGCAAGAAGTTGTAT
CTCACTCCCAAATTCAAAGTTCGAGTGTTGCTGATGTTCGAGCAGCAGCA
GGACTTTTGCTTCCACGATTTGCAAAGATAAGCGGTGTACCTGATGGGAG
TCGTGGAGTTTTTGTTACTGTCGGCGATGATATCATTCGAGTTTTTGCAG
CAGGAAGGTATTGA

Coding sequence (CDS) from alignment at NODE_105_length_50300_cov_4.471768:46470..48383+

>Gcaud1940.t1 ID=Gcaud1940.t1|Name=Gcaud1940.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1914bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:46470..48383+ (Gracilaria caudata M_176_S67 male)
ATGCCGTCTCCGATACGCCTTCCAAACGGTTCCCTGCGACCTTCCTCCTC
CGAACAAGTACGAGAGCTGCCGACAGAGAGAAGACGAGTCGAGCAATCTG
CTGTATTAAACCTGATTGTAGAAGATTTTTTTAGTACAGAACAAGTGCAT
ATTGGACCAGCCCCTAATCCACCCTTTGCTGTCGATGAAGCTGACCCAAA
TGCTCAAGCTGACGTCGAAGAAAGAAATGCGAACGGAAGCATTGTCACTG
TACGATCTTCGCAGGACTCCGAGGAACCCAGCCCATCCCCCGTAATTAAG
CGCCGCCGAAAAAACAAAACGCTCAAGGAACCAGAAGCTGAAAAGGGGGG
TGGAACCTCTCCCCAAGAAGATGGCAACTGCTGCACAATATGTTTGGAGC
CTTGGGCAAGTTCTGGTCCTCACCAAGTGTGTTGCATGCCGTGCGGTCAT
CTGTTCGGATACAGTTGCATAAAAGAATGGATTCGTGGCGGCCACTCTCG
GAAACGGGAATGTCCAACGTGTAAAACGCCTGCTCGCGTGAAGGACTTGA
GATATCTTTTCGGTCTTCCATCACGGCTGGAGGTCTCTGATGTTACGGAA
ATACAGCGACTGCGTGAAGAACTACAGCGGGAGAAGATATCTCATGAGAC
TACAAGGATAAAATATGAGGATACAAAGAAACTGGCGAAGATATACCGCG
AGCAGATGCGAGACCTCCAACGCCAGGTAAAGCCTTCTGTTCAAACATTT
GGGCATGAGCATAATCTACAACGTGTTGAACCTGTGGACAACATCCGTCT
GGTGTCAGTGAATCGAACTACTGGTGGTTCTCTAGCGGTTGCAGTCGATC
AAGACGCATCATATTTATTCAACGAACGTGTGCCTGGGGACAGATCGCGA
CATCGAATAGGCCGCGTAGACATTGGAAGACCGAATGTACCAATGTACTC
ACAATATCCAACTGAGAAACGCGTAAACTGCATCGAAGTGTGTCGTCACA
CATGCAGAGCGGATCATAGACATGTTGCAGTAGCAAGCACTGATAACAGT
GTTAGCATCTTGACTCCAACTCTTCAGCGCGCAACAACTCTTCGGCTGCC
CCGGATTCCGCTGTCTTGTTCTTGGCTTTCCAGTCGCCCACACCTGATAG
CAATTGGACTCGTCTCAGGTGAAGTTTTAATGTACGACATAAGGCAAACT
TCGACGCATATGTACGAATCAATATTGTCTCGCAATCAAGGATTCCGAGC
CGTTCATTCTTTAGAGGAAGTCGCAGTTAACGACTCACACGACTCATCCG
CGGTTTTAGCAGCCTCACCACACGGCGTATTTGGTATCTCGTTTGATGGA
TTCATGGGCACGCCAAACGTTTACGAGGTAAAAGGTGGTGTGCCCGAGGA
TTGGGCTCCCACGAGTTTCACTGTGAGTGGGAACATGATCGCTGTGGCTG
CAAGAAGGCGTGGTACTGCAGGTTGCGCATCTCAAGAAATGGGATGTTCG
TTGTCCATGCACAGGGGTCTCGTTAAGGAAGGACAAGACCTGAAGTTTGG
TCCTTCACTCGGCGAGCCAGTATACACCTCCTCACAAAGTGTACCATTCG
TGCATTGTGGTATTGTTGAAGGAAACGAAGGCTATGTAGATACGATACTG
GCATACCCAGATAAGCATGCTTCGAGTAAGCTGAGTGTGTGGGCTTACAA
GGAAGATGTAAATGAGGGTGTCCCGAGCTGGAAGGGGCAAGAAGTTGTAT
CTCACTCCCAAATTCAAAGTTCGAGTGTTGCTGATGTTCGAGCAGCAGCA
GGACTTTTGCTTCCACGATTTGCAAAGATAAGCGGTGTACCTGATGGGAG
TCGTGGAGTTTTTGTTACTGTCGGCGATGATATCATTCGAGTTTTTGCAG
CAGGAAGGTATTGA