Gcaud9178.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9178.t1
Unique NameGcaud9178.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length75
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1928_length_7623_cov_4.225438contigNODE_1928_length_7623_cov_4.225438:5678..6394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9178Gcaud9178Gracilaria caudata M_176_S67 malegeneNODE_1928_length_7623_cov_4.225438 5678..6394 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9178.t1Gcaud9178.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1928_length_7623_cov_4.225438 5678..6394 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9178.t1.stop1Gcaud9178.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1928_length_7623_cov_4.225438 5678..5680 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9178.t1.CDS1Gcaud9178.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1928_length_7623_cov_4.225438 5678..5710 -
Gcaud9178.t1.CDS2Gcaud9178.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1928_length_7623_cov_4.225438 5940..6010 -
Gcaud9178.t1.CDS3Gcaud9178.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1928_length_7623_cov_4.225438 6274..6394 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9178.t1.exon1Gcaud9178.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1928_length_7623_cov_4.225438 5678..5710 -
Gcaud9178.t1.exon2Gcaud9178.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1928_length_7623_cov_4.225438 5940..6010 -
Gcaud9178.t1.exon3Gcaud9178.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1928_length_7623_cov_4.225438 6274..6394 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9178.t1.intron1Gcaud9178.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1928_length_7623_cov_4.225438 5711..5939 -
Gcaud9178.t1.intron2Gcaud9178.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1928_length_7623_cov_4.225438 6011..6273 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9178.t1.start1Gcaud9178.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1928_length_7623_cov_4.225438 6392..6394 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9178.t1 ID=Gcaud9178.t1|Name=Gcaud9178.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=75bp
MAESQTGDSVKPIVRKNCKSKREGRLFTSIKKAFIGIQPDMSYAQPSNNI
ASMPSSSNTEIIAGLQKSLLVSVR*
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spliced messenger RNA

>Gcaud9178.t1 ID=Gcaud9178.t1|Name=Gcaud9178.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=225bp|location=Sequence derived from alignment at NODE_1928_length_7623_cov_4.225438:5678..6394- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGAATCGCAAACAGGGGATTCAGTCAAGCCTATAGTGCGGAAGAA
TTGTAAGTCGAAACGAGAGGGAAGGCTTTTCACAAGCATAAAGAAGGCCT
TTATAGGAATCCAGCCAGACATGTCGTACGCGCAGCCATCTAATAATATA
GCGTCCATGCCTTCTTCTTCCAACACGGAGATCATCGCTGGACTTCAGAA
GTCGCTACTGGTGTCAGTCCGATGA
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protein sequence of Gcaud9178.t1

>Gcaud9178.t1 ID=Gcaud9178.t1|Name=Gcaud9178.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=75bp
MAESQTGDSVKPIVRKNCKSKREGRLFTSIKKAFIGIQPDMSYAQPSNNI
ASMPSSSNTEIIAGLQKSLLVSVR*
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mRNA from alignment at NODE_1928_length_7623_cov_4.225438:5678..6394-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9178.t1 ID=Gcaud9178.t1|Name=Gcaud9178.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=717bp|location=Sequence derived from alignment at NODE_1928_length_7623_cov_4.225438:5678..6394- (Gracilaria caudata M_176_S67 male)
ATGGCTGAATCGCAAACAGGGGATTCAGTCAAGCCTATAGTGCGGAAGAA
TTGTAAGTCGAAACGAGAGGGAAGGCTTTTCACAAGCATAAAGAAGGCCT
TTATAGGAATCCAGCCAGACAGTGCGTTCTACAACCGAAGTTTCCAAGCC
CTATTCATGTTTTGATACCAAAGCCTCACGAGAGTCGATTTCAGTAATCG
AAATCTTCAGTCTGCTTCGGTTTACCGTCCTTTGGAACAGTCGGTCGTTC
ACAGAGTATTATCAATGTGTTCTTTGTTTTCGTGGCGTTGAATTTCTATG
CATCGGTACGAAGGTACCTGTCGACGTTCATATCTCAGACACCTAACTTG
CTTATCGTATTCCTGTAATCCACTGCGTTTCCAGTGTCGTACGCGCAGCC
ATCTAATAATATAGCGTCCATGCCTTCTTCTTCCAACACGGAGATCATCG
CTGGAGTAAGTTGAATCTCTCCCTTCAACTGCTTATCGGCCTCAACGTCT
TCGAGCAACAATTTCATCAACAATGGAGTGAATGCGTAAGGACCCAGGAT
GATGTTACACACATCACCGCAACTCAGCGACTTTGCTTCCTCCGCGTTCG
GCTTTTCTTTGATTCTCTCGATCGCTACGCGTTCTCCTATTGACCTAATT
TCATCTTCCGTTTTCACCACTCCATATGCCCCAGCTTCAGAAGTCGCTAC
TGGTGTCAGTCCGATGA
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Coding sequence (CDS) from alignment at NODE_1928_length_7623_cov_4.225438:5678..6394-

>Gcaud9178.t1 ID=Gcaud9178.t1|Name=Gcaud9178.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=225bp|location=Sequence derived from alignment at NODE_1928_length_7623_cov_4.225438:5678..6394- (Gracilaria caudata M_176_S67 male)
ATGGCTGAATCGCAAACAGGGGATTCAGTCAAGCCTATAGTGCGGAAGAA
TTGTAAGTCGAAACGAGAGGGAAGGCTTTTCACAAGCATAAAGAAGGCCT
TTATAGGAATCCAGCCAGACATGTCGTACGCGCAGCCATCTAATAATATA
GCGTCCATGCCTTCTTCTTCCAACACGGAGATCATCGCTGGACTTCAGAA
GTCGCTACTGGTGTCAGTCCGATGA
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