Gcaud2913.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2913.t1
Unique NameGcaud2913.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length177
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_18_length_79438_cov_4.566121contigNODE_18_length_79438_cov_4.566121:71483..72013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2913Gcaud2913Gracilaria caudata M_176_S67 malegeneNODE_18_length_79438_cov_4.566121 71483..72013 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2913.t1.stop1Gcaud2913.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_18_length_79438_cov_4.566121 71483..71485 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2913.t1.CDS1Gcaud2913.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_18_length_79438_cov_4.566121 71483..72013 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2913.t1.exon1Gcaud2913.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_18_length_79438_cov_4.566121 71483..72013 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2913.t1.start1Gcaud2913.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_18_length_79438_cov_4.566121 72011..72013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2913.t1Gcaud2913.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_18_length_79438_cov_4.566121 71483..72013 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2913.t1 ID=Gcaud2913.t1|Name=Gcaud2913.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=177bp
MNIDSPPREPLGDEALAPVAELQQYGASIVEELDRAETELTSAENQPFNG
ISPQVMEDISRLREKQFEMFRQHVEIEQQYKIQNAVTEENNVQKMAFGAI
AKTMRKKEKATAALLQHLERFDDELREVMDKFETCRATQEEAAASSEIDK
TGSAQRRTSPEQSANDDTSIHGQNGR*
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spliced messenger RNA

>Gcaud2913.t1 ID=Gcaud2913.t1|Name=Gcaud2913.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=531bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:71483..72013- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACATCGATTCTCCTCCTCGTGAACCTCTTGGAGACGAAGCCCTTGC
TCCAGTCGCCGAACTTCAGCAATATGGAGCCTCAATCGTTGAAGAACTTG
ACCGAGCCGAAACAGAACTGACGAGTGCGGAAAACCAGCCCTTCAATGGA
ATCAGCCCACAGGTCATGGAAGACATATCACGTCTACGTGAAAAACAATT
CGAAATGTTTCGCCAGCACGTTGAAATCGAGCAGCAGTACAAGATTCAAA
ACGCGGTTACGGAAGAAAACAACGTTCAAAAGATGGCGTTTGGCGCCATT
GCGAAGACCATGCGAAAGAAGGAGAAAGCCACGGCTGCCTTGCTGCAGCA
CCTTGAGCGCTTCGACGATGAACTTCGAGAGGTCATGGACAAATTTGAAA
CTTGCAGAGCGACCCAAGAGGAAGCTGCCGCCTCCAGCGAAATTGATAAA
ACTGGTTCAGCTCAGCGCAGGACGAGCCCGGAACAGTCAGCTAACGACGA
CACAAGCATTCATGGGCAAAACGGGCGGTGA
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protein sequence of Gcaud2913.t1

>Gcaud2913.t1 ID=Gcaud2913.t1|Name=Gcaud2913.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=177bp
MNIDSPPREPLGDEALAPVAELQQYGASIVEELDRAETELTSAENQPFNG
ISPQVMEDISRLREKQFEMFRQHVEIEQQYKIQNAVTEENNVQKMAFGAI
AKTMRKKEKATAALLQHLERFDDELREVMDKFETCRATQEEAAASSEIDK
TGSAQRRTSPEQSANDDTSIHGQNGR*
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mRNA from alignment at NODE_18_length_79438_cov_4.566121:71483..72013-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2913.t1 ID=Gcaud2913.t1|Name=Gcaud2913.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=531bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:71483..72013- (Gracilaria caudata M_176_S67 male)
ATGAACATCGATTCTCCTCCTCGTGAACCTCTTGGAGACGAAGCCCTTGC
TCCAGTCGCCGAACTTCAGCAATATGGAGCCTCAATCGTTGAAGAACTTG
ACCGAGCCGAAACAGAACTGACGAGTGCGGAAAACCAGCCCTTCAATGGA
ATCAGCCCACAGGTCATGGAAGACATATCACGTCTACGTGAAAAACAATT
CGAAATGTTTCGCCAGCACGTTGAAATCGAGCAGCAGTACAAGATTCAAA
ACGCGGTTACGGAAGAAAACAACGTTCAAAAGATGGCGTTTGGCGCCATT
GCGAAGACCATGCGAAAGAAGGAGAAAGCCACGGCTGCCTTGCTGCAGCA
CCTTGAGCGCTTCGACGATGAACTTCGAGAGGTCATGGACAAATTTGAAA
CTTGCAGAGCGACCCAAGAGGAAGCTGCCGCCTCCAGCGAAATTGATAAA
ACTGGTTCAGCTCAGCGCAGGACGAGCCCGGAACAGTCAGCTAACGACGA
CACAAGCATTCATGGGCAAAACGGGCGGTGA
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Coding sequence (CDS) from alignment at NODE_18_length_79438_cov_4.566121:71483..72013-

>Gcaud2913.t1 ID=Gcaud2913.t1|Name=Gcaud2913.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=531bp|location=Sequence derived from alignment at NODE_18_length_79438_cov_4.566121:71483..72013- (Gracilaria caudata M_176_S67 male)
ATGAACATCGATTCTCCTCCTCGTGAACCTCTTGGAGACGAAGCCCTTGC
TCCAGTCGCCGAACTTCAGCAATATGGAGCCTCAATCGTTGAAGAACTTG
ACCGAGCCGAAACAGAACTGACGAGTGCGGAAAACCAGCCCTTCAATGGA
ATCAGCCCACAGGTCATGGAAGACATATCACGTCTACGTGAAAAACAATT
CGAAATGTTTCGCCAGCACGTTGAAATCGAGCAGCAGTACAAGATTCAAA
ACGCGGTTACGGAAGAAAACAACGTTCAAAAGATGGCGTTTGGCGCCATT
GCGAAGACCATGCGAAAGAAGGAGAAAGCCACGGCTGCCTTGCTGCAGCA
CCTTGAGCGCTTCGACGATGAACTTCGAGAGGTCATGGACAAATTTGAAA
CTTGCAGAGCGACCCAAGAGGAAGCTGCCGCCTCCAGCGAAATTGATAAA
ACTGGTTCAGCTCAGCGCAGGACGAGCCCGGAACAGTCAGCTAACGACGA
CACAAGCATTCATGGGCAAAACGGGCGGTGA
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