Gcaud3871.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3871.t1
Unique NameGcaud3871.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length176
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1894_length_7841_cov_4.694581contigNODE_1894_length_7841_cov_4.694581:6387..6914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_09680T0
PFAMsDSPc
Max annot lvl2759|Eukaryota
Evalue8.31e-42
EggNOG OGsCOG2453@1|root,2S79E@2759|Eukaryota
Descriptionprotein tyrosine/serine/threonine phosphatase activity
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3871Gcaud3871Gracilaria caudata M_176_S67 malegeneNODE_1894_length_7841_cov_4.694581 6387..6914 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3871.t1.stop1Gcaud3871.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1894_length_7841_cov_4.694581 6387..6389 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3871.t1.CDS1Gcaud3871.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1894_length_7841_cov_4.694581 6387..6914 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3871.t1.exon1Gcaud3871.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1894_length_7841_cov_4.694581 6387..6914 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3871.t1.start1Gcaud3871.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1894_length_7841_cov_4.694581 6912..6914 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3871.t1Gcaud3871.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1894_length_7841_cov_4.694581 6387..6914 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3871.t1 ID=Gcaud3871.t1|Name=Gcaud3871.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=176bp
MSENNFNFSRVSARDELAFGSARPGFPSKEVAMEEVEPWIRFMKASGVKR
VLSLLGEDEKDFYRFDIDQEMTNAFGEGKYTRTSVFVPGSRDVVVSALDA
AHKAEEPIVIHCSGGEGRAAIGMSMWLTHVYGISPEEAAQEIQKETDSTP
GTVRRISAQKVAHLISAGTMTGFKK*
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spliced messenger RNA

>Gcaud3871.t1 ID=Gcaud3871.t1|Name=Gcaud3871.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=528bp|location=Sequence derived from alignment at NODE_1894_length_7841_cov_4.694581:6387..6914- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGAGAATAACTTTAACTTTTCTCGCGTATCAGCTCGTGACGAACT
GGCATTTGGATCCGCACGACCTGGGTTTCCATCGAAGGAAGTAGCTATGG
AAGAGGTGGAGCCATGGATCAGATTTATGAAAGCCAGCGGCGTAAAGCGC
GTTCTTAGCCTTCTTGGTGAAGATGAAAAAGACTTTTACAGGTTCGATAT
TGACCAGGAGATGACAAACGCTTTCGGTGAAGGTAAATATACGCGGACTT
CCGTGTTTGTTCCGGGTTCTAGAGATGTCGTAGTCTCTGCTTTGGATGCT
GCGCACAAAGCTGAGGAGCCAATCGTCATTCACTGTTCAGGAGGGGAAGG
CCGTGCGGCAATTGGTATGAGTATGTGGTTGACACATGTGTACGGGATTT
CGCCGGAAGAAGCAGCTCAAGAAATACAGAAAGAAACCGATAGCACCCCT
GGAACCGTTCGGAGAATCTCTGCTCAGAAAGTTGCCCATCTCATATCTGC
AGGCACCATGACTGGGTTCAAGAAGTAG
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protein sequence of Gcaud3871.t1

>Gcaud3871.t1 ID=Gcaud3871.t1|Name=Gcaud3871.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=176bp
MSENNFNFSRVSARDELAFGSARPGFPSKEVAMEEVEPWIRFMKASGVKR
VLSLLGEDEKDFYRFDIDQEMTNAFGEGKYTRTSVFVPGSRDVVVSALDA
AHKAEEPIVIHCSGGEGRAAIGMSMWLTHVYGISPEEAAQEIQKETDSTP
GTVRRISAQKVAHLISAGTMTGFKK*
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mRNA from alignment at NODE_1894_length_7841_cov_4.694581:6387..6914-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3871.t1 ID=Gcaud3871.t1|Name=Gcaud3871.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=528bp|location=Sequence derived from alignment at NODE_1894_length_7841_cov_4.694581:6387..6914- (Gracilaria caudata M_176_S67 male)
ATGTCGGAGAATAACTTTAACTTTTCTCGCGTATCAGCTCGTGACGAACT
GGCATTTGGATCCGCACGACCTGGGTTTCCATCGAAGGAAGTAGCTATGG
AAGAGGTGGAGCCATGGATCAGATTTATGAAAGCCAGCGGCGTAAAGCGC
GTTCTTAGCCTTCTTGGTGAAGATGAAAAAGACTTTTACAGGTTCGATAT
TGACCAGGAGATGACAAACGCTTTCGGTGAAGGTAAATATACGCGGACTT
CCGTGTTTGTTCCGGGTTCTAGAGATGTCGTAGTCTCTGCTTTGGATGCT
GCGCACAAAGCTGAGGAGCCAATCGTCATTCACTGTTCAGGAGGGGAAGG
CCGTGCGGCAATTGGTATGAGTATGTGGTTGACACATGTGTACGGGATTT
CGCCGGAAGAAGCAGCTCAAGAAATACAGAAAGAAACCGATAGCACCCCT
GGAACCGTTCGGAGAATCTCTGCTCAGAAAGTTGCCCATCTCATATCTGC
AGGCACCATGACTGGGTTCAAGAAGTAG
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Coding sequence (CDS) from alignment at NODE_1894_length_7841_cov_4.694581:6387..6914-

>Gcaud3871.t1 ID=Gcaud3871.t1|Name=Gcaud3871.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=528bp|location=Sequence derived from alignment at NODE_1894_length_7841_cov_4.694581:6387..6914- (Gracilaria caudata M_176_S67 male)
ATGTCGGAGAATAACTTTAACTTTTCTCGCGTATCAGCTCGTGACGAACT
GGCATTTGGATCCGCACGACCTGGGTTTCCATCGAAGGAAGTAGCTATGG
AAGAGGTGGAGCCATGGATCAGATTTATGAAAGCCAGCGGCGTAAAGCGC
GTTCTTAGCCTTCTTGGTGAAGATGAAAAAGACTTTTACAGGTTCGATAT
TGACCAGGAGATGACAAACGCTTTCGGTGAAGGTAAATATACGCGGACTT
CCGTGTTTGTTCCGGGTTCTAGAGATGTCGTAGTCTCTGCTTTGGATGCT
GCGCACAAAGCTGAGGAGCCAATCGTCATTCACTGTTCAGGAGGGGAAGG
CCGTGCGGCAATTGGTATGAGTATGTGGTTGACACATGTGTACGGGATTT
CGCCGGAAGAAGCAGCTCAAGAAATACAGAAAGAAACCGATAGCACCCCT
GGAACCGTTCGGAGAATCTCTGCTCAGAAAGTTGCCCATCTCATATCTGC
AGGCACCATGACTGGGTTCAAGAAGTAG
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