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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud10075.t1.stop1 | Gcaud10075.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_1870_length_7981_cov_3.789607 6736..6738 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud10075.t1.intron1 | Gcaud10075.t1.intron1 | Gracilaria caudata M_176_S67 male | intron | NODE_1870_length_7981_cov_3.789607 7324..7408 - |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud10075.t1.start1 | Gcaud10075.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_1870_length_7981_cov_3.789607 7565..7567 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud10075.t1 ID=Gcaud10075.t1|Name=Gcaud10075.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=249bp
MTDQQLAPRRSKRQHKSVAELERRARALFQQEGEELYDGSDASVDLADLS
DQEDEVDSDFDRAEEVGDAEQEAKQAEREVRRAERAERVHTQKRKGGAYV
DAALRTQPKERKVRRTSGATHVHKGLDRSSLRKSTRVASARAAERRAIKE
KKKPRERRVEQYEVPTQQQRLKTAKLTEVLNRGSLKDLLRLEEEKKRVVV
KKKADVGEKMSTKWKDGSCTISFTKGVSTQQIQQVMLRHSDEDEEESE* back to topspliced messenger RNA >Gcaud10075.t1 ID=Gcaud10075.t1|Name=Gcaud10075.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=747bp|location=Sequence derived from alignment at NODE_1870_length_7981_cov_3.789607:6736..7567- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGACAGACCAACAGCTGGCGCCCCGTCGCAGCAAGCGGCAGCACAAGTC
CGTGGCCGAACTGGAACGTCGCGCCCGAGCGCTGTTTCAACAAGAGGGCG
AGGAGTTGTACGACGGATCCGACGCCTCGGTCGACCTCGCCGATCTGTCC
GATCAAGAAGATGAAGTGGACTCCGATTTCGATCGCGCGGAGGAGGTGGG
CGACGCGGAGCAAGAGGCGAAACAGGCGGAACGAGAGGTGAGACGTGCGG
AACGTGCGGAACGTGTGCACACGCAGAAAAGAAAAGGGGGCGCTTATGTG
GACGCGGCGTTGAGAACGCAGCCGAAGGAACGCAAGGTGCGACGCACGTC
GGGCGCAACGCACGTGCACAAGGGGCTGGACAGGAGTTCGTTGAGGAAGA
GCACGCGCGTGGCGTCGGCGCGGGCGGCGGAGCGAAGGGCGATCAAGGAG
AAGAAGAAACCGAGGGAGAGACGCGTGGAACAATACGAGGTGCCGACGCA
GCAACAGCGACTGAAAACGGCAAAGCTCACGGAGGTGTTGAATCGAGGCA
GTCTGAAGGATTTGTTGCGGTTGGAGGAGGAAAAGAAACGCGTGGTGGTC
AAGAAGAAGGCAGATGTGGGCGAAAAGATGAGCACCAAATGGAAGGATGG
CAGCTGTACAATAAGTTTTACGAAAGGCGTTTCTACGCAACAAATTCAAC
AGGTGATGTTGAGACATTCAGATGAGGATGAGGAGGAAAGCGAATAG back to topprotein sequence of Gcaud10075.t1 >Gcaud10075.t1 ID=Gcaud10075.t1|Name=Gcaud10075.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=249bp
MTDQQLAPRRSKRQHKSVAELERRARALFQQEGEELYDGSDASVDLADLS
DQEDEVDSDFDRAEEVGDAEQEAKQAEREVRRAERAERVHTQKRKGGAYV
DAALRTQPKERKVRRTSGATHVHKGLDRSSLRKSTRVASARAAERRAIKE
KKKPRERRVEQYEVPTQQQRLKTAKLTEVLNRGSLKDLLRLEEEKKRVVV
KKKADVGEKMSTKWKDGSCTISFTKGVSTQQIQQVMLRHSDEDEEESE* back to topmRNA from alignment at NODE_1870_length_7981_cov_3.789607:6736..7567- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud10075.t1 ID=Gcaud10075.t1|Name=Gcaud10075.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=832bp|location=Sequence derived from alignment at NODE_1870_length_7981_cov_3.789607:6736..7567- (Gracilaria caudata M_176_S67 male)
ATGACAGACCAACAGCTGGCGCCCCGTCGCAGCAAGCGGCAGCACAAGTC
CGTGGCCGAACTGGAACGTCGCGCCCGAGCGCTGTTTCAACAAGAGGGCG
AGGAGTTGTACGACGGATCCGACGCCTCGGTCGACCTCGCCGATCTGTCC
GATCAAGAAGTAAGTTAAAACAACACGCAAACCAAAAAAAAAAAACGAAA
AAGAAGGCAGACAGGAAAGAGCTGACGACTAGCTTGCGAATTAGGATGAA
GTGGACTCCGATTTCGATCGCGCGGAGGAGGTGGGCGACGCGGAGCAAGA
GGCGAAACAGGCGGAACGAGAGGTGAGACGTGCGGAACGTGCGGAACGTG
TGCACACGCAGAAAAGAAAAGGGGGCGCTTATGTGGACGCGGCGTTGAGA
ACGCAGCCGAAGGAACGCAAGGTGCGACGCACGTCGGGCGCAACGCACGT
GCACAAGGGGCTGGACAGGAGTTCGTTGAGGAAGAGCACGCGCGTGGCGT
CGGCGCGGGCGGCGGAGCGAAGGGCGATCAAGGAGAAGAAGAAACCGAGG
GAGAGACGCGTGGAACAATACGAGGTGCCGACGCAGCAACAGCGACTGAA
AACGGCAAAGCTCACGGAGGTGTTGAATCGAGGCAGTCTGAAGGATTTGT
TGCGGTTGGAGGAGGAAAAGAAACGCGTGGTGGTCAAGAAGAAGGCAGAT
GTGGGCGAAAAGATGAGCACCAAATGGAAGGATGGCAGCTGTACAATAAG
TTTTACGAAAGGCGTTTCTACGCAACAAATTCAACAGGTGATGTTGAGAC
ATTCAGATGAGGATGAGGAGGAAAGCGAATAG back to topCoding sequence (CDS) from alignment at NODE_1870_length_7981_cov_3.789607:6736..7567- >Gcaud10075.t1 ID=Gcaud10075.t1|Name=Gcaud10075.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=747bp|location=Sequence derived from alignment at NODE_1870_length_7981_cov_3.789607:6736..7567- (Gracilaria caudata M_176_S67 male)
ATGACAGACCAACAGCTGGCGCCCCGTCGCAGCAAGCGGCAGCACAAGTC
CGTGGCCGAACTGGAACGTCGCGCCCGAGCGCTGTTTCAACAAGAGGGCG
AGGAGTTGTACGACGGATCCGACGCCTCGGTCGACCTCGCCGATCTGTCC
GATCAAGAAGATGAAGTGGACTCCGATTTCGATCGCGCGGAGGAGGTGGG
CGACGCGGAGCAAGAGGCGAAACAGGCGGAACGAGAGGTGAGACGTGCGG
AACGTGCGGAACGTGTGCACACGCAGAAAAGAAAAGGGGGCGCTTATGTG
GACGCGGCGTTGAGAACGCAGCCGAAGGAACGCAAGGTGCGACGCACGTC
GGGCGCAACGCACGTGCACAAGGGGCTGGACAGGAGTTCGTTGAGGAAGA
GCACGCGCGTGGCGTCGGCGCGGGCGGCGGAGCGAAGGGCGATCAAGGAG
AAGAAGAAACCGAGGGAGAGACGCGTGGAACAATACGAGGTGCCGACGCA
GCAACAGCGACTGAAAACGGCAAAGCTCACGGAGGTGTTGAATCGAGGCA
GTCTGAAGGATTTGTTGCGGTTGGAGGAGGAAAAGAAACGCGTGGTGGTC
AAGAAGAAGGCAGATGTGGGCGAAAAGATGAGCACCAAATGGAAGGATGG
CAGCTGTACAATAAGTTTTACGAAAGGCGTTTCTACGCAACAAATTCAAC
AGGTGATGTTGAGACATTCAGATGAGGATGAGGAGGAAAGCGAATAG back to top
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