Gcaud2973.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2973.t1
Unique NameGcaud2973.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length310
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1847_length_8094_cov_3.938023contigNODE_1847_length_8094_cov_3.938023:4641..5649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4792.ETI39419
PFAMsADH_N,ADH_zinc_N
Max annot lvl4776|Peronosporales
KEGG rclassRC00052
KEGG koko:K07512
KEGG ReactionR01278,R03776,R03856,R03989,R04753,R06985,R07162
KEGG Pathwayko00062,ko01100,ko01212,map00062,map01100,map01212
KEGG ModuleM00085
Evalue1.73e-56
EggNOG OGsCOG0604@1|root,KOG0025@2759|Eukaryota,3Q7TR@4776|Peronosporales
EC1.3.1.38
DescriptionZinc-binding dehydrogenase
COG categoryCK
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2973Gcaud2973Gracilaria caudata M_176_S67 malegeneNODE_1847_length_8094_cov_3.938023 4641..5649 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2973.t1Gcaud2973.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1847_length_8094_cov_3.938023 4641..5649 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2973.t1.start1Gcaud2973.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1847_length_8094_cov_3.938023 4641..4643 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2973.t1.CDS1Gcaud2973.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1847_length_8094_cov_3.938023 4641..4862 +
Gcaud2973.t1.CDS2Gcaud2973.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1847_length_8094_cov_3.938023 4942..5649 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2973.t1.exon1Gcaud2973.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1847_length_8094_cov_3.938023 4641..4862 +
Gcaud2973.t1.exon2Gcaud2973.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1847_length_8094_cov_3.938023 4942..5649 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2973.t1.intron1Gcaud2973.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1847_length_8094_cov_3.938023 4863..4941 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2973.t1.stop1Gcaud2973.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1847_length_8094_cov_3.938023 5647..5649 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2973.t1 ID=Gcaud2973.t1|Name=Gcaud2973.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=310bp
MPSPKPSDSDLSVKWLAAGVDPVDLATISGSPSASAFAPSIFPAVAGTEG
VGRVTAAGPGVSGISEGDLVIPIKTSLGTWRESSVIDYSHVLPVPDSIRV
ELAATLSASPFTAYRLLRDFVNLSPGDVVLQNAASTPVGTAIVQLARSMG
LETISLVNTPSAEYAPTVERLKLMGGDVVIGEQYVTTEGFYQVVSDMPKP
SLIINGGDETSFATLAALASKGSTLVTYCPGVADAKAARSKGLKSASFSL
PEWLEQTDRAQVESMVIDLTNMIESGELTAWLQRVKFDQLPAAIQQGGMI
NRKLVAMME*
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spliced messenger RNA

>Gcaud2973.t1 ID=Gcaud2973.t1|Name=Gcaud2973.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=930bp|location=Sequence derived from alignment at NODE_1847_length_8094_cov_3.938023:4641..5649+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCGCCGAAGCCGTCCGACAGCGATCTTAGCGTGAAGTGGCTGGC
GGCAGGCGTCGATCCCGTCGATCTAGCCACTATCTCGGGCAGTCCGTCCG
CGTCTGCCTTCGCGCCCTCCATCTTCCCGGCCGTTGCCGGCACTGAGGGC
GTTGGACGTGTCACTGCGGCCGGTCCGGGCGTTAGTGGCATTTCAGAGGG
AGATCTTGTCATCCCTATCAAGACTTCGTTGGGAACGTGGCGTGAGTCGT
CTGTTATTGATTACTCTCATGTACTTCCTGTACCTGACAGCATTCGCGTC
GAACTTGCTGCTACGCTCTCGGCATCTCCGTTCACTGCGTATAGATTGTT
GCGCGATTTTGTTAACCTCTCCCCCGGAGATGTGGTACTTCAGAACGCGG
CCTCCACTCCGGTAGGTACTGCCATCGTGCAGTTGGCCAGATCAATGGGA
CTTGAAACCATATCATTAGTCAATACGCCCTCAGCAGAGTACGCTCCAAC
CGTGGAACGCCTGAAACTCATGGGTGGCGACGTCGTGATCGGAGAGCAAT
ACGTTACAACAGAGGGCTTCTATCAGGTGGTGTCAGACATGCCCAAGCCA
TCGCTAATCATCAACGGCGGCGATGAAACGTCGTTTGCCACACTCGCTGC
CTTGGCTTCTAAAGGCTCAACATTGGTTACGTACTGTCCGGGCGTGGCCG
ACGCCAAGGCAGCGCGGAGCAAGGGCTTGAAGAGCGCGTCGTTTTCGCTG
CCAGAGTGGCTGGAACAAACTGACCGTGCGCAGGTTGAAAGCATGGTGAT
CGACCTGACAAACATGATAGAGTCTGGTGAGCTCACTGCATGGCTTCAGC
GTGTGAAGTTTGACCAACTCCCAGCAGCCATCCAACAAGGCGGCATGATT
AATCGGAAGCTTGTAGCCATGATGGAGTAA
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protein sequence of Gcaud2973.t1

>Gcaud2973.t1 ID=Gcaud2973.t1|Name=Gcaud2973.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=310bp
MPSPKPSDSDLSVKWLAAGVDPVDLATISGSPSASAFAPSIFPAVAGTEG
VGRVTAAGPGVSGISEGDLVIPIKTSLGTWRESSVIDYSHVLPVPDSIRV
ELAATLSASPFTAYRLLRDFVNLSPGDVVLQNAASTPVGTAIVQLARSMG
LETISLVNTPSAEYAPTVERLKLMGGDVVIGEQYVTTEGFYQVVSDMPKP
SLIINGGDETSFATLAALASKGSTLVTYCPGVADAKAARSKGLKSASFSL
PEWLEQTDRAQVESMVIDLTNMIESGELTAWLQRVKFDQLPAAIQQGGMI
NRKLVAMME*
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mRNA from alignment at NODE_1847_length_8094_cov_3.938023:4641..5649+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2973.t1 ID=Gcaud2973.t1|Name=Gcaud2973.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1009bp|location=Sequence derived from alignment at NODE_1847_length_8094_cov_3.938023:4641..5649+ (Gracilaria caudata M_176_S67 male)
ATGCCGTCGCCGAAGCCGTCCGACAGCGATCTTAGCGTGAAGTGGCTGGC
GGCAGGCGTCGATCCCGTCGATCTAGCCACTATCTCGGGCAGTCCGTCCG
CGTCTGCCTTCGCGCCCTCCATCTTCCCGGCCGTTGCCGGCACTGAGGGC
GTTGGACGTGTCACTGCGGCCGGTCCGGGCGTTAGTGGCATTTCAGAGGG
AGATCTTGTCATCCCTATCAAGGTGCGTGCTGTTGAGAAGCCCGCTTGAC
GTTATCGTGTTCTAAGCTTTGTTCTACGGTGCTAACTTTGTGTCTGCAAA
GACTTCGTTGGGAACGTGGCGTGAGTCGTCTGTTATTGATTACTCTCATG
TACTTCCTGTACCTGACAGCATTCGCGTCGAACTTGCTGCTACGCTCTCG
GCATCTCCGTTCACTGCGTATAGATTGTTGCGCGATTTTGTTAACCTCTC
CCCCGGAGATGTGGTACTTCAGAACGCGGCCTCCACTCCGGTAGGTACTG
CCATCGTGCAGTTGGCCAGATCAATGGGACTTGAAACCATATCATTAGTC
AATACGCCCTCAGCAGAGTACGCTCCAACCGTGGAACGCCTGAAACTCAT
GGGTGGCGACGTCGTGATCGGAGAGCAATACGTTACAACAGAGGGCTTCT
ATCAGGTGGTGTCAGACATGCCCAAGCCATCGCTAATCATCAACGGCGGC
GATGAAACGTCGTTTGCCACACTCGCTGCCTTGGCTTCTAAAGGCTCAAC
ATTGGTTACGTACTGTCCGGGCGTGGCCGACGCCAAGGCAGCGCGGAGCA
AGGGCTTGAAGAGCGCGTCGTTTTCGCTGCCAGAGTGGCTGGAACAAACT
GACCGTGCGCAGGTTGAAAGCATGGTGATCGACCTGACAAACATGATAGA
GTCTGGTGAGCTCACTGCATGGCTTCAGCGTGTGAAGTTTGACCAACTCC
CAGCAGCCATCCAACAAGGCGGCATGATTAATCGGAAGCTTGTAGCCATG
ATGGAGTAA
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Coding sequence (CDS) from alignment at NODE_1847_length_8094_cov_3.938023:4641..5649+

>Gcaud2973.t1 ID=Gcaud2973.t1|Name=Gcaud2973.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=930bp|location=Sequence derived from alignment at NODE_1847_length_8094_cov_3.938023:4641..5649+ (Gracilaria caudata M_176_S67 male)
ATGCCGTCGCCGAAGCCGTCCGACAGCGATCTTAGCGTGAAGTGGCTGGC
GGCAGGCGTCGATCCCGTCGATCTAGCCACTATCTCGGGCAGTCCGTCCG
CGTCTGCCTTCGCGCCCTCCATCTTCCCGGCCGTTGCCGGCACTGAGGGC
GTTGGACGTGTCACTGCGGCCGGTCCGGGCGTTAGTGGCATTTCAGAGGG
AGATCTTGTCATCCCTATCAAGACTTCGTTGGGAACGTGGCGTGAGTCGT
CTGTTATTGATTACTCTCATGTACTTCCTGTACCTGACAGCATTCGCGTC
GAACTTGCTGCTACGCTCTCGGCATCTCCGTTCACTGCGTATAGATTGTT
GCGCGATTTTGTTAACCTCTCCCCCGGAGATGTGGTACTTCAGAACGCGG
CCTCCACTCCGGTAGGTACTGCCATCGTGCAGTTGGCCAGATCAATGGGA
CTTGAAACCATATCATTAGTCAATACGCCCTCAGCAGAGTACGCTCCAAC
CGTGGAACGCCTGAAACTCATGGGTGGCGACGTCGTGATCGGAGAGCAAT
ACGTTACAACAGAGGGCTTCTATCAGGTGGTGTCAGACATGCCCAAGCCA
TCGCTAATCATCAACGGCGGCGATGAAACGTCGTTTGCCACACTCGCTGC
CTTGGCTTCTAAAGGCTCAACATTGGTTACGTACTGTCCGGGCGTGGCCG
ACGCCAAGGCAGCGCGGAGCAAGGGCTTGAAGAGCGCGTCGTTTTCGCTG
CCAGAGTGGCTGGAACAAACTGACCGTGCGCAGGTTGAAAGCATGGTGAT
CGACCTGACAAACATGATAGAGTCTGGTGAGCTCACTGCATGGCTTCAGC
GTGTGAAGTTTGACCAACTCCCAGCAGCCATCCAACAAGGCGGCATGATT
AATCGGAAGCTTGTAGCCATGATGGAGTAA
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