Gcaud1200.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1200.t1
Unique NameGcaud1200.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length75
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_18335_length_285_cov_2.752577contigNODE_18335_length_285_cov_2.752577:2..226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog756067.MicvaDRAFT_1735
PFAMsDUF2235
Max annot lvl1117|Cyanobacteria
Evalue6.26e-09
EggNOG OGsCOG3673@1|root,COG3673@2|Bacteria,1G1VC@1117|Cyanobacteria,1H9I8@1150|Oscillatoriales
Description'Conserved protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1200Gcaud1200Gracilaria caudata M_176_S67 malegeneNODE_18335_length_285_cov_2.752577 2..226 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1200.t1.CDS1Gcaud1200.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_18335_length_285_cov_2.752577 2..226 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1200.t1.exon1Gcaud1200.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_18335_length_285_cov_2.752577 2..226 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1200.t1.start1Gcaud1200.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_18335_length_285_cov_2.752577 224..226 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1200.t1Gcaud1200.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_18335_length_285_cov_2.752577 2..226 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1200.t1 ID=Gcaud1200.t1|Name=Gcaud1200.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=75bp
MVPFEPTLMTPNPKRGDSQLTQVYMPGRHGGVGGGSKSNEPLARNALKFV
LDEMKRRGLGLDVDERMVPDEYCVD
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spliced messenger RNA

>Gcaud1200.t1 ID=Gcaud1200.t1|Name=Gcaud1200.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=225bp|location=Sequence derived from alignment at NODE_18335_length_285_cov_2.752577:2..226- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCCGTTTGAACCCACGCTGATGACACCAAACCCGAAGAGAGGAGA
CTCGCAGTTGACGCAGGTGTACATGCCCGGTCGTCACGGAGGTGTAGGCG
GCGGCAGTAAGAGCAACGAACCGCTCGCAAGAAACGCGCTCAAATTCGTG
CTGGACGAAATGAAGCGACGAGGACTGGGCTTGGATGTGGATGAACGCAT
GGTGCCGGACGAGTACTGCGTGGAT
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protein sequence of Gcaud1200.t1

>Gcaud1200.t1 ID=Gcaud1200.t1|Name=Gcaud1200.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=75bp
MVPFEPTLMTPNPKRGDSQLTQVYMPGRHGGVGGGSKSNEPLARNALKFV
LDEMKRRGLGLDVDERMVPDEYCVD
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mRNA from alignment at NODE_18335_length_285_cov_2.752577:2..226-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1200.t1 ID=Gcaud1200.t1|Name=Gcaud1200.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=225bp|location=Sequence derived from alignment at NODE_18335_length_285_cov_2.752577:2..226- (Gracilaria caudata M_176_S67 male)
ATGGTTCCGTTTGAACCCACGCTGATGACACCAAACCCGAAGAGAGGAGA
CTCGCAGTTGACGCAGGTGTACATGCCCGGTCGTCACGGAGGTGTAGGCG
GCGGCAGTAAGAGCAACGAACCGCTCGCAAGAAACGCGCTCAAATTCGTG
CTGGACGAAATGAAGCGACGAGGACTGGGCTTGGATGTGGATGAACGCAT
GGTGCCGGACGAGTACTGCGTGGAT
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Coding sequence (CDS) from alignment at NODE_18335_length_285_cov_2.752577:2..226-

>Gcaud1200.t1 ID=Gcaud1200.t1|Name=Gcaud1200.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=225bp|location=Sequence derived from alignment at NODE_18335_length_285_cov_2.752577:2..226- (Gracilaria caudata M_176_S67 male)
ATGGTTCCGTTTGAACCCACGCTGATGACACCAAACCCGAAGAGAGGAGA
CTCGCAGTTGACGCAGGTGTACATGCCCGGTCGTCACGGAGGTGTAGGCG
GCGGCAGTAAGAGCAACGAACCGCTCGCAAGAAACGCGCTCAAATTCGTG
CTGGACGAAATGAAGCGACGAGGACTGGGCTTGGATGTGGATGAACGCAT
GGTGCCGGACGAGTACTGCGTGGAT
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