Gcaud3360.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3360.t1
Unique Name	Gcaud3360.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	183

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_179_length_39915_cov_4.496535	contig	NODE_179_length_39915_cov_4.496535:10475..11023 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	10224.XP_006816337.1
Preferred name	RPP21
PFAMs	Rpr2
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K03540
KEGG Pathway	ko03013,map03013
GOs	GO:0000966,GO:0001682,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005655,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0030677,GO:0030681,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042221,GO:0042493,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0050896,GO:0070013,GO:0071704,GO:0090304,GO:0099116,GO:1901360,GO:1902494,GO:1902555,GO:1905348,GO:1990904
Evalue	1.48e-12
EggNOG OGs	COG2023@1\|root,KOG4394@2759\|Eukaryota,3A865@33154\|Opisthokonta,3BQMA@33208\|Metazoa,3D7DZ@33213\|Bilateria
EC	3.1.26.5
Description	tRNA 5'-leader removal
COG category	A
BRITE	ko00000,ko00001,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3360	Gcaud3360	Gracilaria caudata M_176_S67 male	gene	NODE_179_length_39915_cov_4.496535 10475..11023 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3360.t1.stop1	Gcaud3360.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_179_length_39915_cov_4.496535 10475..10477 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3360.t1.CDS1	Gcaud3360.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_179_length_39915_cov_4.496535 10475..11023 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3360.t1.exon1	Gcaud3360.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_179_length_39915_cov_4.496535 10475..11023 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3360.t1.start1	Gcaud3360.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_179_length_39915_cov_4.496535 11021..11023 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3360.t1	Gcaud3360.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_179_length_39915_cov_4.496535 10475..11023 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_179_length_39915_cov_4.496535:10475..11023-
coding sequence from alignment at NODE_179_length_39915_cov_4.496535:10475..11023-

mRNA sequence

>Gcaud3360.t1 ID=Gcaud3360.t1|Name=Gcaud3360.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=183bp
MGQKRFKGNAKKKKAPREEDAALRLTHLIAASTILSERAPSVSKFYARTS
RQICRRVNLTLDSVSVKRLFCKKCNSTLLPGVGDPPATYRIASRRERHLV
VKCGHCGFVKRYLARNPEQSMAKGKKVKTSNMEREVDDSHDKTTEPKPNE
DLQLRAANRATLTRGQEVNPWFQWPSNNCKVQ*

spliced messenger RNA

>Gcaud3360.t1 ID=Gcaud3360.t1|Name=Gcaud3360.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=549bp|location=Sequence derived from alignment at NODE_179_length_39915_cov_4.496535:10475..11023- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACAAAAACGGTTCAAGGGTAACGCGAAGAAGAAAAAGGCCCCCAG
GGAGGAAGACGCAGCGCTTCGTCTGACTCATCTAATAGCGGCATCCACGA
TACTTTCAGAAAGGGCCCCCTCGGTTTCCAAGTTTTACGCACGCACATCA
AGGCAAATATGCCGTCGGGTCAACTTAACACTTGATTCTGTGTCTGTTAA
GCGCCTGTTCTGCAAGAAGTGCAATTCCACGCTTCTCCCAGGTGTTGGCG
ATCCGCCCGCAACTTATCGGATAGCATCAAGGCGTGAGCGTCATCTCGTT
GTGAAATGTGGTCACTGCGGTTTTGTGAAGCGGTACTTGGCGAGAAACCC
GGAGCAGTCCATGGCGAAGGGAAAGAAGGTTAAGACGAGTAATATGGAGA
GGGAAGTTGATGATTCGCATGACAAAACGACGGAACCGAAACCAAATGAA
GACTTGCAGTTGAGAGCGGCGAATCGTGCGACTCTAACTAGGGGTCAAGA
AGTGAACCCGTGGTTTCAATGGCCTTCAAACAATTGTAAAGTGCAGTAA

protein sequence of Gcaud3360.t1

>Gcaud3360.t1 ID=Gcaud3360.t1|Name=Gcaud3360.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=183bp
MGQKRFKGNAKKKKAPREEDAALRLTHLIAASTILSERAPSVSKFYARTS
RQICRRVNLTLDSVSVKRLFCKKCNSTLLPGVGDPPATYRIASRRERHLV
VKCGHCGFVKRYLARNPEQSMAKGKKVKTSNMEREVDDSHDKTTEPKPNE
DLQLRAANRATLTRGQEVNPWFQWPSNNCKVQ*

mRNA from alignment at NODE_179_length_39915_cov_4.496535:10475..11023-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3360.t1 ID=Gcaud3360.t1|Name=Gcaud3360.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=549bp|location=Sequence derived from alignment at NODE_179_length_39915_cov_4.496535:10475..11023- (Gracilaria caudata M_176_S67 male)
ATGGGACAAAAACGGTTCAAGGGTAACGCGAAGAAGAAAAAGGCCCCCAG
GGAGGAAGACGCAGCGCTTCGTCTGACTCATCTAATAGCGGCATCCACGA
TACTTTCAGAAAGGGCCCCCTCGGTTTCCAAGTTTTACGCACGCACATCA
AGGCAAATATGCCGTCGGGTCAACTTAACACTTGATTCTGTGTCTGTTAA
GCGCCTGTTCTGCAAGAAGTGCAATTCCACGCTTCTCCCAGGTGTTGGCG
ATCCGCCCGCAACTTATCGGATAGCATCAAGGCGTGAGCGTCATCTCGTT
GTGAAATGTGGTCACTGCGGTTTTGTGAAGCGGTACTTGGCGAGAAACCC
GGAGCAGTCCATGGCGAAGGGAAAGAAGGTTAAGACGAGTAATATGGAGA
GGGAAGTTGATGATTCGCATGACAAAACGACGGAACCGAAACCAAATGAA
GACTTGCAGTTGAGAGCGGCGAATCGTGCGACTCTAACTAGGGGTCAAGA
AGTGAACCCGTGGTTTCAATGGCCTTCAAACAATTGTAAAGTGCAGTAA

Coding sequence (CDS) from alignment at NODE_179_length_39915_cov_4.496535:10475..11023-

>Gcaud3360.t1 ID=Gcaud3360.t1|Name=Gcaud3360.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=549bp|location=Sequence derived from alignment at NODE_179_length_39915_cov_4.496535:10475..11023- (Gracilaria caudata M_176_S67 male)
ATGGGACAAAAACGGTTCAAGGGTAACGCGAAGAAGAAAAAGGCCCCCAG
GGAGGAAGACGCAGCGCTTCGTCTGACTCATCTAATAGCGGCATCCACGA
TACTTTCAGAAAGGGCCCCCTCGGTTTCCAAGTTTTACGCACGCACATCA
AGGCAAATATGCCGTCGGGTCAACTTAACACTTGATTCTGTGTCTGTTAA
GCGCCTGTTCTGCAAGAAGTGCAATTCCACGCTTCTCCCAGGTGTTGGCG
ATCCGCCCGCAACTTATCGGATAGCATCAAGGCGTGAGCGTCATCTCGTT
GTGAAATGTGGTCACTGCGGTTTTGTGAAGCGGTACTTGGCGAGAAACCC
GGAGCAGTCCATGGCGAAGGGAAAGAAGGTTAAGACGAGTAATATGGAGA
GGGAAGTTGATGATTCGCATGACAAAACGACGGAACCGAAACCAAATGAA
GACTTGCAGTTGAGAGCGGCGAATCGTGCGACTCTAACTAGGGGTCAAGA
AGTGAACCCGTGGTTTCAATGGCCTTCAAACAATTGTAAAGTGCAGTAA