Gcaud8609.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8609.t1
Unique Name	Gcaud8609.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	311

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1734_length_8724_cov_3.673346	contig	NODE_1734_length_8724_cov_3.673346:6824..7756 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	223192.XP_007915963.1
PFAMs	Pkinase
Max annot lvl	4751\|Fungi
Evalue	1.95e-23
EggNOG OGs	2EK1P@1\|root,2SQ23@2759\|Eukaryota,39U6I@33154\|Opisthokonta,3PDK8@4751\|Fungi,3QU16@4890\|Ascomycota,21PBT@147550\|Sordariomycetes
Description	Protein kinase domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8609	Gcaud8609	Gracilaria caudata M_176_S67 male	gene	NODE_1734_length_8724_cov_3.673346 6824..7756 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8609.t1.stop1	Gcaud8609.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1734_length_8724_cov_3.673346 6824..6826 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8609.t1.CDS1	Gcaud8609.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1734_length_8724_cov_3.673346 6824..7756 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8609.t1.exon1	Gcaud8609.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1734_length_8724_cov_3.673346 6824..7756 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8609.t1.start1	Gcaud8609.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1734_length_8724_cov_3.673346 7754..7756 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8609.t1	Gcaud8609.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1734_length_8724_cov_3.673346 6824..7756 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1734_length_8724_cov_3.673346:6824..7756-
coding sequence from alignment at NODE_1734_length_8724_cov_3.673346:6824..7756-

mRNA sequence

>Gcaud8609.t1 ID=Gcaud8609.t1|Name=Gcaud8609.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=311bp
MLPRPTIVMEGKLGFQSAKYRPLTTTTTTTADIEATGMSKSLHEVHEFEY
DGDYFEIELLGSQAPRRLPERYEDTGCKYVGLLFPMIQAALRSVVPHVRN
TNVDKISITSRESVVTIEKKYTPKPSIENRFPGIPMYRPPELVLIEWFTF
THQKVAIRGTDVICFQKVVSSGQEHSVCTEISMLVKVGYHPNVCLLRGLV
VEDTGRISGFLTLFRSGRTLYEIEKANEERKKKWKTQIDSAVKHIHARGA
VWGDVKPSNVVVDDEFNVVLVDFEGGYTEGWVDSALAGTMEGDKQGCEKM
YRFIEGLPDE*

spliced messenger RNA

>Gcaud8609.t1 ID=Gcaud8609.t1|Name=Gcaud8609.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=933bp|location=Sequence derived from alignment at NODE_1734_length_8724_cov_3.673346:6824..7756- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCCCCAGACCTACCATCGTCATGGAAGGAAAACTGGGTTTCCAAAG
CGCTAAGTATCGTCCGCTCACCACCACCACCACCACCACCGCCGACATCG
AGGCCACCGGCATGTCAAAGAGTCTCCACGAAGTTCACGAATTTGAGTAT
GACGGGGACTACTTCGAGATTGAGCTCCTTGGGTCACAAGCACCTCGAAG
ATTGCCGGAACGTTACGAAGATACAGGGTGTAAATATGTCGGTCTCTTGT
TTCCGATGATCCAAGCTGCTCTTCGTAGCGTTGTTCCGCATGTCAGGAAC
ACTAATGTGGACAAGATTTCGATCACAAGCCGGGAGAGCGTTGTAACCAT
TGAGAAGAAATACACTCCGAAACCAAGTATTGAGAATCGGTTTCCAGGTA
TTCCGATGTATCGACCGCCGGAACTTGTTCTCATCGAATGGTTCACGTTC
ACTCATCAAAAAGTAGCCATTCGCGGCACAGATGTCATCTGCTTTCAAAA
AGTGGTATCGTCCGGTCAGGAGCATTCAGTTTGCACAGAAATTTCAATGC
TCGTCAAAGTGGGATACCATCCTAATGTCTGTTTGCTTCGCGGCTTAGTT
GTCGAAGACACAGGAAGAATATCTGGGTTTTTGACCCTCTTCAGATCAGG
TCGCACGTTGTATGAAATCGAGAAGGCGAATGAGGAACGGAAGAAGAAAT
GGAAGACTCAAATAGATAGCGCCGTTAAGCATATTCATGCTAGAGGAGCG
GTATGGGGGGACGTGAAACCGTCAAATGTCGTGGTAGACGACGAATTCAA
CGTTGTGTTGGTTGATTTTGAAGGAGGGTATACTGAAGGTTGGGTGGATA
GTGCTCTTGCGGGAACAATGGAAGGGGATAAACAAGGATGCGAGAAGATG
TATAGGTTTATTGAAGGTCTTCCTGATGAGTAA

protein sequence of Gcaud8609.t1

>Gcaud8609.t1 ID=Gcaud8609.t1|Name=Gcaud8609.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=311bp
MLPRPTIVMEGKLGFQSAKYRPLTTTTTTTADIEATGMSKSLHEVHEFEY
DGDYFEIELLGSQAPRRLPERYEDTGCKYVGLLFPMIQAALRSVVPHVRN
TNVDKISITSRESVVTIEKKYTPKPSIENRFPGIPMYRPPELVLIEWFTF
THQKVAIRGTDVICFQKVVSSGQEHSVCTEISMLVKVGYHPNVCLLRGLV
VEDTGRISGFLTLFRSGRTLYEIEKANEERKKKWKTQIDSAVKHIHARGA
VWGDVKPSNVVVDDEFNVVLVDFEGGYTEGWVDSALAGTMEGDKQGCEKM
YRFIEGLPDE*

mRNA from alignment at NODE_1734_length_8724_cov_3.673346:6824..7756-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8609.t1 ID=Gcaud8609.t1|Name=Gcaud8609.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=933bp|location=Sequence derived from alignment at NODE_1734_length_8724_cov_3.673346:6824..7756- (Gracilaria caudata M_176_S67 male)
ATGCTCCCCAGACCTACCATCGTCATGGAAGGAAAACTGGGTTTCCAAAG
CGCTAAGTATCGTCCGCTCACCACCACCACCACCACCACCGCCGACATCG
AGGCCACCGGCATGTCAAAGAGTCTCCACGAAGTTCACGAATTTGAGTAT
GACGGGGACTACTTCGAGATTGAGCTCCTTGGGTCACAAGCACCTCGAAG
ATTGCCGGAACGTTACGAAGATACAGGGTGTAAATATGTCGGTCTCTTGT
TTCCGATGATCCAAGCTGCTCTTCGTAGCGTTGTTCCGCATGTCAGGAAC
ACTAATGTGGACAAGATTTCGATCACAAGCCGGGAGAGCGTTGTAACCAT
TGAGAAGAAATACACTCCGAAACCAAGTATTGAGAATCGGTTTCCAGGTA
TTCCGATGTATCGACCGCCGGAACTTGTTCTCATCGAATGGTTCACGTTC
ACTCATCAAAAAGTAGCCATTCGCGGCACAGATGTCATCTGCTTTCAAAA
AGTGGTATCGTCCGGTCAGGAGCATTCAGTTTGCACAGAAATTTCAATGC
TCGTCAAAGTGGGATACCATCCTAATGTCTGTTTGCTTCGCGGCTTAGTT
GTCGAAGACACAGGAAGAATATCTGGGTTTTTGACCCTCTTCAGATCAGG
TCGCACGTTGTATGAAATCGAGAAGGCGAATGAGGAACGGAAGAAGAAAT
GGAAGACTCAAATAGATAGCGCCGTTAAGCATATTCATGCTAGAGGAGCG
GTATGGGGGGACGTGAAACCGTCAAATGTCGTGGTAGACGACGAATTCAA
CGTTGTGTTGGTTGATTTTGAAGGAGGGTATACTGAAGGTTGGGTGGATA
GTGCTCTTGCGGGAACAATGGAAGGGGATAAACAAGGATGCGAGAAGATG
TATAGGTTTATTGAAGGTCTTCCTGATGAGTAA

Coding sequence (CDS) from alignment at NODE_1734_length_8724_cov_3.673346:6824..7756-

>Gcaud8609.t1 ID=Gcaud8609.t1|Name=Gcaud8609.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=933bp|location=Sequence derived from alignment at NODE_1734_length_8724_cov_3.673346:6824..7756- (Gracilaria caudata M_176_S67 male)
ATGCTCCCCAGACCTACCATCGTCATGGAAGGAAAACTGGGTTTCCAAAG
CGCTAAGTATCGTCCGCTCACCACCACCACCACCACCACCGCCGACATCG
AGGCCACCGGCATGTCAAAGAGTCTCCACGAAGTTCACGAATTTGAGTAT
GACGGGGACTACTTCGAGATTGAGCTCCTTGGGTCACAAGCACCTCGAAG
ATTGCCGGAACGTTACGAAGATACAGGGTGTAAATATGTCGGTCTCTTGT
TTCCGATGATCCAAGCTGCTCTTCGTAGCGTTGTTCCGCATGTCAGGAAC
ACTAATGTGGACAAGATTTCGATCACAAGCCGGGAGAGCGTTGTAACCAT
TGAGAAGAAATACACTCCGAAACCAAGTATTGAGAATCGGTTTCCAGGTA
TTCCGATGTATCGACCGCCGGAACTTGTTCTCATCGAATGGTTCACGTTC
ACTCATCAAAAAGTAGCCATTCGCGGCACAGATGTCATCTGCTTTCAAAA
AGTGGTATCGTCCGGTCAGGAGCATTCAGTTTGCACAGAAATTTCAATGC
TCGTCAAAGTGGGATACCATCCTAATGTCTGTTTGCTTCGCGGCTTAGTT
GTCGAAGACACAGGAAGAATATCTGGGTTTTTGACCCTCTTCAGATCAGG
TCGCACGTTGTATGAAATCGAGAAGGCGAATGAGGAACGGAAGAAGAAAT
GGAAGACTCAAATAGATAGCGCCGTTAAGCATATTCATGCTAGAGGAGCG
GTATGGGGGGACGTGAAACCGTCAAATGTCGTGGTAGACGACGAATTCAA
CGTTGTGTTGGTTGATTTTGAAGGAGGGTATACTGAAGGTTGGGTGGATA
GTGCTCTTGCGGGAACAATGGAAGGGGATAAACAAGGATGCGAGAAGATG
TATAGGTTTATTGAAGGTCTTCCTGATGAGTAA