Gcaud7331.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7331.t1
Unique Name	Gcaud7331.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	454

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1722_length_8807_cov_4.324002	contig	NODE_1722_length_8807_cov_4.324002:5137..6498 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	946362.XP_004996696.1
Preferred name	GPN1
PFAMs	ATP_bind_1
Max annot lvl	33154\|Opisthokonta
KEGG ko	ko:K06883
GOs	GO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006810,GO:0006913,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008150,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022607,GO:0031974,GO:0031981,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048285,GO:0051169,GO:0051179,GO:0051234,GO:0051276,GO:0051641,GO:0051649,GO:0065003,GO:0070013,GO:0071840,GO:0098813,GO:0140014,GO:1903047,GO:1990114
Evalue	2.86e-86
EggNOG OGs	KOG1532@1\|root,KOG1532@2759\|Eukaryota,38DJQ@33154\|Opisthokonta
Description	GTPase activity
COG category	L
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7331	Gcaud7331	Gracilaria caudata M_176_S67 male	gene	NODE_1722_length_8807_cov_4.324002 5137..6498 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7331.t1.stop1	Gcaud7331.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1722_length_8807_cov_4.324002 5137..5139 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7331.t1.CDS1	Gcaud7331.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1722_length_8807_cov_4.324002 5137..6498 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7331.t1.exon1	Gcaud7331.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1722_length_8807_cov_4.324002 5137..6498 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7331.t1.start1	Gcaud7331.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1722_length_8807_cov_4.324002 6496..6498 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7331.t1	Gcaud7331.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1722_length_8807_cov_4.324002 5137..6498 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1722_length_8807_cov_4.324002:5137..6498-
coding sequence from alignment at NODE_1722_length_8807_cov_4.324002:5137..6498-

mRNA sequence

>Gcaud7331.t1 ID=Gcaud7331.t1|Name=Gcaud7331.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=454bp
MAEELHSTTTGAASSSGAAPSTSSAGNADGTRIFTPVCLVLGMAGSGKTT
LVDALSAWLEEDDLSQSSHGSEKDAQSEDDNELNRQIVDAMHSLNLQQAS
SVAPRQPRASASRSQPTPQDLLPGDGAYIINLDPAVYELPYEPNIDIRDT
IKYKQVMSRYSLGPNGAIITSLNLYATRFDQVLTLIEKRAPESRAVIIDT
PGQIETFTWSASGDIITEVLGITLPTVILFVIDTTRCENTMTFVSNMLYA
CSIMYKTRLPMVIVFNKIDAKSCEFAQAWMRDFTQLERNLKENNFLGTLA
RSMAQALEEFYNTFRSVGVSAQTGEGMEQLAQCVKEAALEYEKEYRPYVE
AKKRARAEAKERAQDEQIARIRKDLRGEPDFGSSPRFEEENSDDNGEELK
PSSNVFPDNHAVRLAKMKGEYYDEAEEQRKYDEFITRFNEKTAASSEADS
KDT*

spliced messenger RNA

>Gcaud7331.t1 ID=Gcaud7331.t1|Name=Gcaud7331.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1362bp|location=Sequence derived from alignment at NODE_1722_length_8807_cov_4.324002:5137..6498- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGAGGAATTGCATTCTACGACAACGGGCGCAGCATCTTCTTCCGG
CGCAGCGCCTTCCACCTCCTCTGCCGGGAATGCCGATGGTACGCGCATTT
TCACGCCTGTCTGCCTCGTGCTCGGGATGGCAGGCTCGGGAAAGACCACT
TTGGTCGATGCGCTTTCCGCCTGGCTCGAAGAAGATGATCTGTCGCAAAG
CTCGCACGGCTCCGAGAAAGATGCGCAATCGGAAGATGACAATGAGCTGA
ATCGCCAGATTGTTGACGCCATGCACTCGCTCAATCTACAGCAAGCCTCA
TCAGTTGCCCCGAGGCAGCCTCGCGCGAGCGCTTCACGTTCTCAGCCGAC
TCCTCAAGATTTGCTCCCGGGCGATGGTGCATATATCATTAACTTGGACC
CAGCTGTTTATGAACTGCCTTACGAGCCGAACATTGACATTCGTGATACT
ATCAAATACAAACAAGTTATGAGTCGCTACTCTCTTGGGCCTAACGGTGC
CATTATTACTTCTCTCAACTTGTATGCCACCCGCTTCGACCAGGTTCTCA
CACTTATCGAGAAGCGTGCTCCTGAAAGTCGCGCGGTCATTATTGACACT
CCTGGACAGATCGAGACCTTCACTTGGTCGGCATCGGGAGACATTATTAC
GGAAGTATTGGGCATCACGCTTCCCACTGTCATTCTCTTCGTCATTGACA
CCACCAGATGTGAGAATACCATGACCTTTGTCAGCAACATGCTATACGCT
TGTTCTATAATGTATAAAACCCGATTGCCCATGGTCATTGTCTTCAATAA
GATTGACGCTAAGAGCTGCGAATTTGCACAAGCTTGGATGCGCGATTTTA
CACAGCTGGAGAGAAACCTCAAAGAGAACAACTTTTTGGGCACGCTGGCC
AGAAGTATGGCACAGGCTCTTGAGGAATTCTACAATACCTTTCGCAGTGT
TGGAGTTAGTGCTCAAACTGGTGAGGGTATGGAACAATTAGCGCAATGCG
TCAAAGAAGCAGCATTAGAGTACGAAAAGGAGTATAGACCATACGTTGAA
GCCAAGAAGAGGGCCAGAGCCGAAGCAAAGGAGCGTGCTCAAGATGAACA
GATCGCGAGAATCAGGAAGGACTTACGGGGTGAACCGGACTTTGGCTCAT
CGCCGAGATTCGAAGAAGAAAACTCTGATGACAATGGTGAGGAGTTGAAG
CCGAGTTCCAATGTGTTCCCAGACAACCATGCTGTGAGGCTTGCGAAGAT
GAAAGGAGAGTACTATGATGAAGCGGAAGAACAACGCAAGTATGACGAGT
TTATCACAAGATTTAACGAGAAGACTGCAGCTTCAAGCGAAGCTGATTCG
AAGGATACTTAG

protein sequence of Gcaud7331.t1

>Gcaud7331.t1 ID=Gcaud7331.t1|Name=Gcaud7331.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=454bp
MAEELHSTTTGAASSSGAAPSTSSAGNADGTRIFTPVCLVLGMAGSGKTT
LVDALSAWLEEDDLSQSSHGSEKDAQSEDDNELNRQIVDAMHSLNLQQAS
SVAPRQPRASASRSQPTPQDLLPGDGAYIINLDPAVYELPYEPNIDIRDT
IKYKQVMSRYSLGPNGAIITSLNLYATRFDQVLTLIEKRAPESRAVIIDT
PGQIETFTWSASGDIITEVLGITLPTVILFVIDTTRCENTMTFVSNMLYA
CSIMYKTRLPMVIVFNKIDAKSCEFAQAWMRDFTQLERNLKENNFLGTLA
RSMAQALEEFYNTFRSVGVSAQTGEGMEQLAQCVKEAALEYEKEYRPYVE
AKKRARAEAKERAQDEQIARIRKDLRGEPDFGSSPRFEEENSDDNGEELK
PSSNVFPDNHAVRLAKMKGEYYDEAEEQRKYDEFITRFNEKTAASSEADS
KDT*

mRNA from alignment at NODE_1722_length_8807_cov_4.324002:5137..6498-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7331.t1 ID=Gcaud7331.t1|Name=Gcaud7331.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1362bp|location=Sequence derived from alignment at NODE_1722_length_8807_cov_4.324002:5137..6498- (Gracilaria caudata M_176_S67 male)
ATGGCGGAGGAATTGCATTCTACGACAACGGGCGCAGCATCTTCTTCCGG
CGCAGCGCCTTCCACCTCCTCTGCCGGGAATGCCGATGGTACGCGCATTT
TCACGCCTGTCTGCCTCGTGCTCGGGATGGCAGGCTCGGGAAAGACCACT
TTGGTCGATGCGCTTTCCGCCTGGCTCGAAGAAGATGATCTGTCGCAAAG
CTCGCACGGCTCCGAGAAAGATGCGCAATCGGAAGATGACAATGAGCTGA
ATCGCCAGATTGTTGACGCCATGCACTCGCTCAATCTACAGCAAGCCTCA
TCAGTTGCCCCGAGGCAGCCTCGCGCGAGCGCTTCACGTTCTCAGCCGAC
TCCTCAAGATTTGCTCCCGGGCGATGGTGCATATATCATTAACTTGGACC
CAGCTGTTTATGAACTGCCTTACGAGCCGAACATTGACATTCGTGATACT
ATCAAATACAAACAAGTTATGAGTCGCTACTCTCTTGGGCCTAACGGTGC
CATTATTACTTCTCTCAACTTGTATGCCACCCGCTTCGACCAGGTTCTCA
CACTTATCGAGAAGCGTGCTCCTGAAAGTCGCGCGGTCATTATTGACACT
CCTGGACAGATCGAGACCTTCACTTGGTCGGCATCGGGAGACATTATTAC
GGAAGTATTGGGCATCACGCTTCCCACTGTCATTCTCTTCGTCATTGACA
CCACCAGATGTGAGAATACCATGACCTTTGTCAGCAACATGCTATACGCT
TGTTCTATAATGTATAAAACCCGATTGCCCATGGTCATTGTCTTCAATAA
GATTGACGCTAAGAGCTGCGAATTTGCACAAGCTTGGATGCGCGATTTTA
CACAGCTGGAGAGAAACCTCAAAGAGAACAACTTTTTGGGCACGCTGGCC
AGAAGTATGGCACAGGCTCTTGAGGAATTCTACAATACCTTTCGCAGTGT
TGGAGTTAGTGCTCAAACTGGTGAGGGTATGGAACAATTAGCGCAATGCG
TCAAAGAAGCAGCATTAGAGTACGAAAAGGAGTATAGACCATACGTTGAA
GCCAAGAAGAGGGCCAGAGCCGAAGCAAAGGAGCGTGCTCAAGATGAACA
GATCGCGAGAATCAGGAAGGACTTACGGGGTGAACCGGACTTTGGCTCAT
CGCCGAGATTCGAAGAAGAAAACTCTGATGACAATGGTGAGGAGTTGAAG
CCGAGTTCCAATGTGTTCCCAGACAACCATGCTGTGAGGCTTGCGAAGAT
GAAAGGAGAGTACTATGATGAAGCGGAAGAACAACGCAAGTATGACGAGT
TTATCACAAGATTTAACGAGAAGACTGCAGCTTCAAGCGAAGCTGATTCG
AAGGATACTTAG

Coding sequence (CDS) from alignment at NODE_1722_length_8807_cov_4.324002:5137..6498-

>Gcaud7331.t1 ID=Gcaud7331.t1|Name=Gcaud7331.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1362bp|location=Sequence derived from alignment at NODE_1722_length_8807_cov_4.324002:5137..6498- (Gracilaria caudata M_176_S67 male)
ATGGCGGAGGAATTGCATTCTACGACAACGGGCGCAGCATCTTCTTCCGG
CGCAGCGCCTTCCACCTCCTCTGCCGGGAATGCCGATGGTACGCGCATTT
TCACGCCTGTCTGCCTCGTGCTCGGGATGGCAGGCTCGGGAAAGACCACT
TTGGTCGATGCGCTTTCCGCCTGGCTCGAAGAAGATGATCTGTCGCAAAG
CTCGCACGGCTCCGAGAAAGATGCGCAATCGGAAGATGACAATGAGCTGA
ATCGCCAGATTGTTGACGCCATGCACTCGCTCAATCTACAGCAAGCCTCA
TCAGTTGCCCCGAGGCAGCCTCGCGCGAGCGCTTCACGTTCTCAGCCGAC
TCCTCAAGATTTGCTCCCGGGCGATGGTGCATATATCATTAACTTGGACC
CAGCTGTTTATGAACTGCCTTACGAGCCGAACATTGACATTCGTGATACT
ATCAAATACAAACAAGTTATGAGTCGCTACTCTCTTGGGCCTAACGGTGC
CATTATTACTTCTCTCAACTTGTATGCCACCCGCTTCGACCAGGTTCTCA
CACTTATCGAGAAGCGTGCTCCTGAAAGTCGCGCGGTCATTATTGACACT
CCTGGACAGATCGAGACCTTCACTTGGTCGGCATCGGGAGACATTATTAC
GGAAGTATTGGGCATCACGCTTCCCACTGTCATTCTCTTCGTCATTGACA
CCACCAGATGTGAGAATACCATGACCTTTGTCAGCAACATGCTATACGCT
TGTTCTATAATGTATAAAACCCGATTGCCCATGGTCATTGTCTTCAATAA
GATTGACGCTAAGAGCTGCGAATTTGCACAAGCTTGGATGCGCGATTTTA
CACAGCTGGAGAGAAACCTCAAAGAGAACAACTTTTTGGGCACGCTGGCC
AGAAGTATGGCACAGGCTCTTGAGGAATTCTACAATACCTTTCGCAGTGT
TGGAGTTAGTGCTCAAACTGGTGAGGGTATGGAACAATTAGCGCAATGCG
TCAAAGAAGCAGCATTAGAGTACGAAAAGGAGTATAGACCATACGTTGAA
GCCAAGAAGAGGGCCAGAGCCGAAGCAAAGGAGCGTGCTCAAGATGAACA
GATCGCGAGAATCAGGAAGGACTTACGGGGTGAACCGGACTTTGGCTCAT
CGCCGAGATTCGAAGAAGAAAACTCTGATGACAATGGTGAGGAGTTGAAG
CCGAGTTCCAATGTGTTCCCAGACAACCATGCTGTGAGGCTTGCGAAGAT
GAAAGGAGAGTACTATGATGAAGCGGAAGAACAACGCAAGTATGACGAGT
TTATCACAAGATTTAACGAGAAGACTGCAGCTTCAAGCGAAGCTGATTCG
AAGGATACTTAG