Gcaud7970.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7970.t1
Unique NameGcaud7970.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length363
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_168_length_41232_cov_4.499891contigNODE_168_length_41232_cov_4.499891:2454..3542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog31234.CRE27489
Preferred nameABHD12B
PFAMsAbhydrolase_1,Hydrolase_4
Max annot lvl33208|Metazoa
KEGG rclassRC00037,RC00094
KEGG koko:K13704,ko:K13705
KEGG ReactionR01352
GOsGO:0001654,GO:0002084,GO:0003407,GO:0003674,GO:0003824,GO:0004620,GO:0004622,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005887,GO:0006464,GO:0006575,GO:0006629,GO:0006638,GO:0006639,GO:0006644,GO:0006650,GO:0006658,GO:0006660,GO:0006793,GO:0006796,GO:0006807,GO:0007272,GO:0007275,GO:0007399,GO:0007423,GO:0007610,GO:0007626,GO:0007628,GO:0008150,GO:0008152,GO:0008328,GO:0008344,GO:0008366,GO:0008474,GO:0009056,GO:0009057,GO:0009395,GO:0009605,GO:0009612,GO:0009628,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0010842,GO:0010996,GO:0016020,GO:0016021,GO:0016042,GO:0016298,GO:0016787,GO:0016788,GO:0016790,GO:0019538,GO:0019637,GO:0030163,GO:0030425,GO:0030534,GO:0031224,GO:0031226,GO:0032281,GO:0032501,GO:0032502,GO:0032838,GO:0032839,GO:0032991,GO:0034702,GO:0034703,GO:0035601,GO:0036211,GO:0036269,GO:0036477,GO:0042157,GO:0042159,GO:0042219,GO:0042552,GO:0042995,GO:0043005,GO:0043010,GO:0043170,GO:0043235,GO:0043412,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044260,GO:0044267,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044463,GO:0044464,GO:0046434,GO:0046461,GO:0046462,GO:0046464,GO:0046475,GO:0046486,GO:0046503,GO:0047372,GO:0048513,GO:0048592,GO:0048593,GO:0048646,GO:0048731,GO:0048856,GO:0048880,GO:0048881,GO:0048882,GO:0048884,GO:0048898,GO:0048899,GO:0048915,GO:0048916,GO:0048919,GO:0048925,GO:0050896,GO:0052651,GO:0052689,GO:0060041,GO:0060042,GO:0071704,GO:0071944,GO:0090596,GO:0090659,GO:0097447,GO:0097458,GO:0098599,GO:0098732,GO:0098734,GO:0098796,GO:0098797,GO:0098802,GO:0098878,GO:0099568,GO:0120025,GO:0120038,GO:0120111,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902495,GO:1990351
Evalue5.36e-33
EggNOG OGsCOG1073@1|root,KOG1552@2759|Eukaryota,39JAU@33154|Opisthokonta,3B9NY@33208|Metazoa,3CTAH@33213|Bilateria,40CYZ@6231|Nematoda,1KVHJ@119089|Chromadorea,411DR@6236|Rhabditida
EC3.1.1.23
DescriptionSerine aminopeptidase, S33
COG categoryS
BRITEko00000,ko01000,ko01002,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7970Gcaud7970Gracilaria caudata M_176_S67 malegeneNODE_168_length_41232_cov_4.499891 2454..3542 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7970.t1.stop1Gcaud7970.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_168_length_41232_cov_4.499891 2454..2456 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7970.t1.CDS1Gcaud7970.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_168_length_41232_cov_4.499891 2454..3542 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7970.t1.exon1Gcaud7970.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_168_length_41232_cov_4.499891 2454..3542 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7970.t1.start1Gcaud7970.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_168_length_41232_cov_4.499891 3540..3542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7970.t1Gcaud7970.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_168_length_41232_cov_4.499891 2454..3542 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7970.t1 ID=Gcaud7970.t1|Name=Gcaud7970.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=363bp
MRLVLPLLLLVAQHGNCLSEDVLPSPSATPRHPLCLPFVSFPSLSISYLN
VLVFLVALYVFLFLVHTFYAPAQRALTYLHWVRPPQFLFPLSDFGPYRLH
NARNVSQHHLCGWHLVPPSPPFLACRDQEAFDDRLQHPNQLAVLFLHGNS
GTRAFPPKRVTMLQVLRAHLHAHVVTFDYSGFGDSPGSPSEEVLSSDAGN
MFDWLNQRLHHTSTIMIYGQSLGTFAAVDLAANLGRQQLRRTCLLVLDAP
PSSLVEAVMSHPIALPFRVLPNMRAFLRLCLNEKLDSAAKISRVRLPTLI
LHGKNDRMITVEQGRCLYECAKKAGVDVHFEEFAACGHNNVNSAPNYLQV
VHEFIVTHHKNK*
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spliced messenger RNA

>Gcaud7970.t1 ID=Gcaud7970.t1|Name=Gcaud7970.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1089bp|location=Sequence derived from alignment at NODE_168_length_41232_cov_4.499891:2454..3542- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCTCGTCCTCCCGCTTCTTTTGCTTGTAGCACAGCACGGTAACTG
CTTGTCAGAAGATGTCCTGCCCTCGCCCTCTGCCACTCCGCGTCATCCGT
TATGCCTGCCGTTCGTGTCGTTCCCATCACTTTCGATCTCTTATCTGAAC
GTTCTGGTGTTCCTGGTTGCGCTCTACGTGTTTCTCTTCCTCGTCCACAC
TTTCTACGCCCCTGCCCAGCGTGCTCTGACCTATCTTCACTGGGTACGTC
CTCCTCAGTTTCTCTTTCCCCTCTCCGACTTTGGTCCCTATCGGTTGCAT
AATGCACGTAATGTATCGCAGCACCATCTCTGCGGCTGGCACTTGGTGCC
ACCTTCTCCCCCATTTCTCGCATGCCGCGACCAAGAAGCATTTGACGATC
GTCTGCAACACCCCAACCAACTTGCCGTCCTTTTTCTGCACGGCAACAGC
GGTACCCGCGCATTTCCGCCGAAACGCGTCACCATGCTTCAAGTGTTGCG
AGCTCACCTACACGCGCACGTCGTTACCTTCGACTATTCCGGTTTCGGCG
ACAGTCCAGGTTCCCCTTCCGAGGAAGTCCTGTCGTCGGATGCAGGTAAC
ATGTTCGACTGGTTAAATCAACGATTACATCATACTTCCACGATCATGAT
CTACGGTCAGAGTCTGGGTACTTTTGCTGCAGTTGATCTTGCTGCCAATC
TTGGAAGACAACAGTTGCGACGAACCTGCTTGCTTGTTCTGGATGCCCCG
CCTTCTTCCCTGGTTGAAGCGGTCATGTCCCACCCTATCGCCCTTCCATT
TCGCGTTTTGCCGAATATGAGAGCGTTTCTCAGGCTTTGTCTAAACGAGA
AACTCGATAGCGCTGCAAAGATTTCTCGGGTGAGGCTACCAACACTGATA
CTGCATGGCAAGAACGATCGGATGATTACAGTGGAACAGGGTCGATGTCT
TTACGAATGTGCAAAGAAGGCCGGAGTAGATGTACATTTTGAGGAGTTTG
CCGCGTGTGGTCATAACAATGTCAACTCCGCACCAAACTACCTGCAAGTT
GTTCATGAGTTCATAGTAACGCATCACAAGAACAAATGA
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protein sequence of Gcaud7970.t1

>Gcaud7970.t1 ID=Gcaud7970.t1|Name=Gcaud7970.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=363bp
MRLVLPLLLLVAQHGNCLSEDVLPSPSATPRHPLCLPFVSFPSLSISYLN
VLVFLVALYVFLFLVHTFYAPAQRALTYLHWVRPPQFLFPLSDFGPYRLH
NARNVSQHHLCGWHLVPPSPPFLACRDQEAFDDRLQHPNQLAVLFLHGNS
GTRAFPPKRVTMLQVLRAHLHAHVVTFDYSGFGDSPGSPSEEVLSSDAGN
MFDWLNQRLHHTSTIMIYGQSLGTFAAVDLAANLGRQQLRRTCLLVLDAP
PSSLVEAVMSHPIALPFRVLPNMRAFLRLCLNEKLDSAAKISRVRLPTLI
LHGKNDRMITVEQGRCLYECAKKAGVDVHFEEFAACGHNNVNSAPNYLQV
VHEFIVTHHKNK*
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mRNA from alignment at NODE_168_length_41232_cov_4.499891:2454..3542-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7970.t1 ID=Gcaud7970.t1|Name=Gcaud7970.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1089bp|location=Sequence derived from alignment at NODE_168_length_41232_cov_4.499891:2454..3542- (Gracilaria caudata M_176_S67 male)
ATGCGCCTCGTCCTCCCGCTTCTTTTGCTTGTAGCACAGCACGGTAACTG
CTTGTCAGAAGATGTCCTGCCCTCGCCCTCTGCCACTCCGCGTCATCCGT
TATGCCTGCCGTTCGTGTCGTTCCCATCACTTTCGATCTCTTATCTGAAC
GTTCTGGTGTTCCTGGTTGCGCTCTACGTGTTTCTCTTCCTCGTCCACAC
TTTCTACGCCCCTGCCCAGCGTGCTCTGACCTATCTTCACTGGGTACGTC
CTCCTCAGTTTCTCTTTCCCCTCTCCGACTTTGGTCCCTATCGGTTGCAT
AATGCACGTAATGTATCGCAGCACCATCTCTGCGGCTGGCACTTGGTGCC
ACCTTCTCCCCCATTTCTCGCATGCCGCGACCAAGAAGCATTTGACGATC
GTCTGCAACACCCCAACCAACTTGCCGTCCTTTTTCTGCACGGCAACAGC
GGTACCCGCGCATTTCCGCCGAAACGCGTCACCATGCTTCAAGTGTTGCG
AGCTCACCTACACGCGCACGTCGTTACCTTCGACTATTCCGGTTTCGGCG
ACAGTCCAGGTTCCCCTTCCGAGGAAGTCCTGTCGTCGGATGCAGGTAAC
ATGTTCGACTGGTTAAATCAACGATTACATCATACTTCCACGATCATGAT
CTACGGTCAGAGTCTGGGTACTTTTGCTGCAGTTGATCTTGCTGCCAATC
TTGGAAGACAACAGTTGCGACGAACCTGCTTGCTTGTTCTGGATGCCCCG
CCTTCTTCCCTGGTTGAAGCGGTCATGTCCCACCCTATCGCCCTTCCATT
TCGCGTTTTGCCGAATATGAGAGCGTTTCTCAGGCTTTGTCTAAACGAGA
AACTCGATAGCGCTGCAAAGATTTCTCGGGTGAGGCTACCAACACTGATA
CTGCATGGCAAGAACGATCGGATGATTACAGTGGAACAGGGTCGATGTCT
TTACGAATGTGCAAAGAAGGCCGGAGTAGATGTACATTTTGAGGAGTTTG
CCGCGTGTGGTCATAACAATGTCAACTCCGCACCAAACTACCTGCAAGTT
GTTCATGAGTTCATAGTAACGCATCACAAGAACAAATGA
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Coding sequence (CDS) from alignment at NODE_168_length_41232_cov_4.499891:2454..3542-

>Gcaud7970.t1 ID=Gcaud7970.t1|Name=Gcaud7970.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1089bp|location=Sequence derived from alignment at NODE_168_length_41232_cov_4.499891:2454..3542- (Gracilaria caudata M_176_S67 male)
ATGCGCCTCGTCCTCCCGCTTCTTTTGCTTGTAGCACAGCACGGTAACTG
CTTGTCAGAAGATGTCCTGCCCTCGCCCTCTGCCACTCCGCGTCATCCGT
TATGCCTGCCGTTCGTGTCGTTCCCATCACTTTCGATCTCTTATCTGAAC
GTTCTGGTGTTCCTGGTTGCGCTCTACGTGTTTCTCTTCCTCGTCCACAC
TTTCTACGCCCCTGCCCAGCGTGCTCTGACCTATCTTCACTGGGTACGTC
CTCCTCAGTTTCTCTTTCCCCTCTCCGACTTTGGTCCCTATCGGTTGCAT
AATGCACGTAATGTATCGCAGCACCATCTCTGCGGCTGGCACTTGGTGCC
ACCTTCTCCCCCATTTCTCGCATGCCGCGACCAAGAAGCATTTGACGATC
GTCTGCAACACCCCAACCAACTTGCCGTCCTTTTTCTGCACGGCAACAGC
GGTACCCGCGCATTTCCGCCGAAACGCGTCACCATGCTTCAAGTGTTGCG
AGCTCACCTACACGCGCACGTCGTTACCTTCGACTATTCCGGTTTCGGCG
ACAGTCCAGGTTCCCCTTCCGAGGAAGTCCTGTCGTCGGATGCAGGTAAC
ATGTTCGACTGGTTAAATCAACGATTACATCATACTTCCACGATCATGAT
CTACGGTCAGAGTCTGGGTACTTTTGCTGCAGTTGATCTTGCTGCCAATC
TTGGAAGACAACAGTTGCGACGAACCTGCTTGCTTGTTCTGGATGCCCCG
CCTTCTTCCCTGGTTGAAGCGGTCATGTCCCACCCTATCGCCCTTCCATT
TCGCGTTTTGCCGAATATGAGAGCGTTTCTCAGGCTTTGTCTAAACGAGA
AACTCGATAGCGCTGCAAAGATTTCTCGGGTGAGGCTACCAACACTGATA
CTGCATGGCAAGAACGATCGGATGATTACAGTGGAACAGGGTCGATGTCT
TTACGAATGTGCAAAGAAGGCCGGAGTAGATGTACATTTTGAGGAGTTTG
CCGCGTGTGGTCATAACAATGTCAACTCCGCACCAAACTACCTGCAAGTT
GTTCATGAGTTCATAGTAACGCATCACAAGAACAAATGA
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