Gcaud8077.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8077.t1
Unique NameGcaud8077.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length571
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1675_length_9137_cov_4.183285contigNODE_1675_length_9137_cov_4.183285:3995..5989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708137.1
Preferred nameHSP60
PFAMsCpn60_TCP1
Max annot lvl2759|Eukaryota
KEGG koko:K02940,ko:K04077
KEGG Pathwayko03010,ko03018,ko04212,ko04940,ko05134,ko05152,map03010,map03018,map04212,map04940,map05134,map05152
KEGG ModuleM00177
GOsGO:0000003,GO:0000166,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005507,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006457,GO:0006458,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006996,GO:0007005,GO:0008104,GO:0008144,GO:0008150,GO:0009266,GO:0009314,GO:0009408,GO:0009416,GO:0009453,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0017038,GO:0017076,GO:0019899,GO:0019954,GO:0022626,GO:0030554,GO:0030587,GO:0031090,GO:0031288,GO:0031967,GO:0031974,GO:0031975,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035639,GO:0036094,GO:0040011,GO:0042221,GO:0042330,GO:0042331,GO:0042788,GO:0042886,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044183,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044743,GO:0045041,GO:0045184,GO:0046686,GO:0046872,GO:0046907,GO:0046914,GO:0046956,GO:0048856,GO:0050896,GO:0051082,GO:0051117,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0052128,GO:0055085,GO:0061077,GO:0065002,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0090702,GO:0097159,GO:0097367,GO:0098588,GO:0098805,GO:0099120,GO:1901265,GO:1901363,GO:1990542,GO:1990904
Evalue2.54e-281
EggNOG OGsCOG0459@1|root,KOG0356@2759|Eukaryota
Descriptionprotein refolding
COG categoryO
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03019,ko03029,ko03110,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8077Gcaud8077Gracilaria caudata M_176_S67 malegeneNODE_1675_length_9137_cov_4.183285 3995..5989 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8077.t1Gcaud8077.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1675_length_9137_cov_4.183285 3995..5989 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8077.t1.stop1Gcaud8077.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1675_length_9137_cov_4.183285 3995..3997 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8077.t1.CDS1Gcaud8077.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1675_length_9137_cov_4.183285 3995..5215 -
Gcaud8077.t1.CDS2Gcaud8077.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1675_length_9137_cov_4.183285 5498..5989 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8077.t1.exon1Gcaud8077.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1675_length_9137_cov_4.183285 3995..5215 -
Gcaud8077.t1.exon2Gcaud8077.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1675_length_9137_cov_4.183285 5498..5989 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8077.t1.intron1Gcaud8077.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1675_length_9137_cov_4.183285 5216..5497 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8077.t1.start1Gcaud8077.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1675_length_9137_cov_4.183285 5987..5989 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8077.t1 ID=Gcaud8077.t1|Name=Gcaud8077.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=571bp
MLRASRTRLPAALSVRTFATGKDLRFSTEARNLMAKGVDSLADAVEVTLG
PKGRNVVIEKSFGSPQITKDGVTVAKNIEFKDKHMNLGAQLVRSVANDTN
NIAGDGTTTATVLTRAIYSEGIKAVAAGMNPMDLKRGIDLAVEKVLEALK
AMTQPISTKDEISSVATISANGDIKVGDLIAEAMEKVGREGTITVSDGKT
IHDELDIVEGMKFDRGYISPYFVTDPKSQKVEFENAFVLAVEKKVSTVAS
ILNILEGVMKSQRPLLIIAEDVESEALATLVVNKLRLGIKVCAVKAPGFG
DRRKANLEDISIMTGAQLVSSDLDMKLEDVTLNDLGTAKKITITKDDTII
LDGSGDKKAINDRCDMLRDSLETATSEYDKEKIHERLAKLSGGVAVIKVG
GVSEVEVSERKDRFTDALNATRAAVEEGIVPGGGTALLLSSRDALKNLKG
ANFDQDVGIDIVRKALRVPCYSIARNAGVEGSVVVERLLNHEGDSPLGYN
AQTGEYTDLVRAGIIDPTKVQRTALEQAASVAGLMATTECMVVENPKEES
ADMAAMAAAAGGGMGGGMGF*
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spliced messenger RNA

>Gcaud8077.t1 ID=Gcaud8077.t1|Name=Gcaud8077.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1713bp|location=Sequence derived from alignment at NODE_1675_length_9137_cov_4.183285:3995..5989- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCGCGCGTCGCGGACGCGTCTGCCCGCTGCTCTGTCCGTGCGAAC
CTTCGCTACTGGCAAAGACTTGCGTTTTTCTACCGAGGCTCGTAATCTAA
TGGCCAAGGGTGTTGACTCTCTTGCAGATGCTGTTGAGGTTACACTGGGT
CCGAAAGGACGCAACGTTGTCATCGAGAAGAGCTTTGGATCACCTCAGAT
CACAAAGGATGGTGTCACTGTTGCGAAGAACATTGAGTTTAAAGACAAGC
ATATGAATCTTGGCGCACAACTCGTTCGAAGCGTTGCGAATGACACTAAC
AATATTGCTGGAGATGGTACTACCACTGCTACCGTTCTTACAAGAGCCAT
TTATTCGGAGGGAATCAAAGCGGTGGCTGCTGGTATGAATCCCATGGATC
TTAAACGCGGAATTGATCTTGCTGTCGAAAAGGTTCTGGAGGCTCTCAAG
GCCATGACACAACCAATTAGCACCAAGGACGAAATCAGCTCGGTGGCCAC
AATATCTGCCAACGGTGATATCAAAGTTGGTGATTTGATTGCCGAGGCAA
TGGAGAAGGTCGGTCGTGAAGGAACTATTACCGTGTCGGATGGAAAGACC
ATTCACGATGAACTGGACATTGTCGAGGGTATGAAATTCGACAGGGGGTA
CATCTCACCGTATTTCGTCACGGACCCTAAATCCCAGAAGGTCGAGTTCG
AGAACGCCTTTGTCTTGGCAGTCGAAAAGAAGGTCTCCACCGTGGCTTCC
ATTCTTAATATCTTGGAAGGTGTGATGAAGTCACAGCGCCCATTGCTCAT
CATTGCTGAGGATGTGGAGAGTGAGGCGCTTGCTACGCTCGTTGTCAACA
AGCTTCGTCTAGGCATTAAAGTGTGTGCAGTCAAGGCTCCTGGATTCGGT
GACCGTCGCAAGGCCAACCTCGAGGACATCTCCATCATGACGGGCGCCCA
ACTGGTGAGCAGCGACCTTGACATGAAGCTGGAAGATGTCACTCTCAATG
ATCTTGGAACAGCGAAGAAAATCACCATCACCAAGGATGACACCATCATT
CTTGACGGCAGTGGTGACAAGAAGGCGATCAATGACAGATGTGACATGTT
GAGGGATTCTCTTGAAACTGCTACAAGCGAGTATGACAAGGAAAAGATTC
ATGAAAGACTGGCCAAGCTAAGTGGCGGTGTGGCGGTGATTAAGGTCGGT
GGAGTGAGTGAAGTGGAAGTTTCTGAGAGAAAAGATAGGTTTACAGACGC
TCTGAATGCAACTCGTGCTGCCGTGGAGGAAGGAATCGTGCCAGGAGGTG
GTACCGCATTGTTGCTTTCCTCGAGGGACGCGTTGAAGAATCTCAAGGGC
GCCAATTTTGATCAAGACGTTGGAATCGATATCGTGCGAAAGGCGTTGAG
AGTACCGTGTTACTCGATTGCCCGCAACGCCGGAGTCGAAGGGTCTGTAG
TTGTAGAGAGGTTACTGAATCATGAAGGTGATTCTCCACTGGGTTACAAC
GCCCAGACCGGGGAATACACAGATCTTGTGAGGGCTGGTATTATCGATCC
GACAAAGGTGCAGAGAACTGCACTGGAACAGGCAGCGTCCGTTGCAGGGC
TCATGGCTACAACCGAATGTATGGTAGTGGAAAACCCAAAGGAGGAGTCA
GCTGACATGGCCGCCATGGCCGCAGCCGCTGGAGGTGGCATGGGTGGAGG
CATGGGCTTCTAA
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protein sequence of Gcaud8077.t1

>Gcaud8077.t1 ID=Gcaud8077.t1|Name=Gcaud8077.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=571bp
MLRASRTRLPAALSVRTFATGKDLRFSTEARNLMAKGVDSLADAVEVTLG
PKGRNVVIEKSFGSPQITKDGVTVAKNIEFKDKHMNLGAQLVRSVANDTN
NIAGDGTTTATVLTRAIYSEGIKAVAAGMNPMDLKRGIDLAVEKVLEALK
AMTQPISTKDEISSVATISANGDIKVGDLIAEAMEKVGREGTITVSDGKT
IHDELDIVEGMKFDRGYISPYFVTDPKSQKVEFENAFVLAVEKKVSTVAS
ILNILEGVMKSQRPLLIIAEDVESEALATLVVNKLRLGIKVCAVKAPGFG
DRRKANLEDISIMTGAQLVSSDLDMKLEDVTLNDLGTAKKITITKDDTII
LDGSGDKKAINDRCDMLRDSLETATSEYDKEKIHERLAKLSGGVAVIKVG
GVSEVEVSERKDRFTDALNATRAAVEEGIVPGGGTALLLSSRDALKNLKG
ANFDQDVGIDIVRKALRVPCYSIARNAGVEGSVVVERLLNHEGDSPLGYN
AQTGEYTDLVRAGIIDPTKVQRTALEQAASVAGLMATTECMVVENPKEES
ADMAAMAAAAGGGMGGGMGF*
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mRNA from alignment at NODE_1675_length_9137_cov_4.183285:3995..5989-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8077.t1 ID=Gcaud8077.t1|Name=Gcaud8077.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1995bp|location=Sequence derived from alignment at NODE_1675_length_9137_cov_4.183285:3995..5989- (Gracilaria caudata M_176_S67 male)
ATGCTGCGCGCGTCGCGGACGCGTCTGCCCGCTGCTCTGTCCGTGCGAAC
CTTCGCTACTGGCAAAGACTTGCGTTTTTCTACCGAGGCTCGTAATCTAA
TGGCCAAGGGTGTTGACTCTCTTGCAGATGCTGTTGAGGTTACACTGGGT
CCGAAAGGACGCAACGTTGTCATCGAGAAGAGCTTTGGATCACCTCAGAT
CACAAAGGATGGTGTCACTGTTGCGAAGAACATTGAGTTTAAAGACAAGC
ATATGAATCTTGGCGCACAACTCGTTCGAAGCGTTGCGAATGACACTAAC
AATATTGCTGGAGATGGTACTACCACTGCTACCGTTCTTACAAGAGCCAT
TTATTCGGAGGGAATCAAAGCGGTGGCTGCTGGTATGAATCCCATGGATC
TTAAACGCGGAATTGATCTTGCTGTCGAAAAGGTTCTGGAGGCTCTCAAG
GCCATGACACAACCAATTAGCACCAAGGACGAAATCAGCTCGGTAAGTTC
TCAATCAATCGTTTTGTTCTTGTTTGGAGCAAATAGAGCACGTTTGAATG
CAATGATGTTAAATGCTTTTATGCAACCACGGAAGTGCGATTTTGGGGAC
GGCCGTTTTGGTCTTAACCTTTGCACTGCAAGACGAACGTTTTCTCTTGT
CATAGTTACTCTGATTGCACGTCTTCGTGAACTCTGCATCTCCGTTCTCT
ACGCTGGGTTTTATGAATATTATCGTTGACTAACCTGTATGCTGTTTTCT
GCGTTCTTTGTCCTTTCGATGTAGGTGGCCACAATATCTGCCAACGGTGA
TATCAAAGTTGGTGATTTGATTGCCGAGGCAATGGAGAAGGTCGGTCGTG
AAGGAACTATTACCGTGTCGGATGGAAAGACCATTCACGATGAACTGGAC
ATTGTCGAGGGTATGAAATTCGACAGGGGGTACATCTCACCGTATTTCGT
CACGGACCCTAAATCCCAGAAGGTCGAGTTCGAGAACGCCTTTGTCTTGG
CAGTCGAAAAGAAGGTCTCCACCGTGGCTTCCATTCTTAATATCTTGGAA
GGTGTGATGAAGTCACAGCGCCCATTGCTCATCATTGCTGAGGATGTGGA
GAGTGAGGCGCTTGCTACGCTCGTTGTCAACAAGCTTCGTCTAGGCATTA
AAGTGTGTGCAGTCAAGGCTCCTGGATTCGGTGACCGTCGCAAGGCCAAC
CTCGAGGACATCTCCATCATGACGGGCGCCCAACTGGTGAGCAGCGACCT
TGACATGAAGCTGGAAGATGTCACTCTCAATGATCTTGGAACAGCGAAGA
AAATCACCATCACCAAGGATGACACCATCATTCTTGACGGCAGTGGTGAC
AAGAAGGCGATCAATGACAGATGTGACATGTTGAGGGATTCTCTTGAAAC
TGCTACAAGCGAGTATGACAAGGAAAAGATTCATGAAAGACTGGCCAAGC
TAAGTGGCGGTGTGGCGGTGATTAAGGTCGGTGGAGTGAGTGAAGTGGAA
GTTTCTGAGAGAAAAGATAGGTTTACAGACGCTCTGAATGCAACTCGTGC
TGCCGTGGAGGAAGGAATCGTGCCAGGAGGTGGTACCGCATTGTTGCTTT
CCTCGAGGGACGCGTTGAAGAATCTCAAGGGCGCCAATTTTGATCAAGAC
GTTGGAATCGATATCGTGCGAAAGGCGTTGAGAGTACCGTGTTACTCGAT
TGCCCGCAACGCCGGAGTCGAAGGGTCTGTAGTTGTAGAGAGGTTACTGA
ATCATGAAGGTGATTCTCCACTGGGTTACAACGCCCAGACCGGGGAATAC
ACAGATCTTGTGAGGGCTGGTATTATCGATCCGACAAAGGTGCAGAGAAC
TGCACTGGAACAGGCAGCGTCCGTTGCAGGGCTCATGGCTACAACCGAAT
GTATGGTAGTGGAAAACCCAAAGGAGGAGTCAGCTGACATGGCCGCCATG
GCCGCAGCCGCTGGAGGTGGCATGGGTGGAGGCATGGGCTTCTAA
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Coding sequence (CDS) from alignment at NODE_1675_length_9137_cov_4.183285:3995..5989-

>Gcaud8077.t1 ID=Gcaud8077.t1|Name=Gcaud8077.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1713bp|location=Sequence derived from alignment at NODE_1675_length_9137_cov_4.183285:3995..5989- (Gracilaria caudata M_176_S67 male)
ATGCTGCGCGCGTCGCGGACGCGTCTGCCCGCTGCTCTGTCCGTGCGAAC
CTTCGCTACTGGCAAAGACTTGCGTTTTTCTACCGAGGCTCGTAATCTAA
TGGCCAAGGGTGTTGACTCTCTTGCAGATGCTGTTGAGGTTACACTGGGT
CCGAAAGGACGCAACGTTGTCATCGAGAAGAGCTTTGGATCACCTCAGAT
CACAAAGGATGGTGTCACTGTTGCGAAGAACATTGAGTTTAAAGACAAGC
ATATGAATCTTGGCGCACAACTCGTTCGAAGCGTTGCGAATGACACTAAC
AATATTGCTGGAGATGGTACTACCACTGCTACCGTTCTTACAAGAGCCAT
TTATTCGGAGGGAATCAAAGCGGTGGCTGCTGGTATGAATCCCATGGATC
TTAAACGCGGAATTGATCTTGCTGTCGAAAAGGTTCTGGAGGCTCTCAAG
GCCATGACACAACCAATTAGCACCAAGGACGAAATCAGCTCGGTGGCCAC
AATATCTGCCAACGGTGATATCAAAGTTGGTGATTTGATTGCCGAGGCAA
TGGAGAAGGTCGGTCGTGAAGGAACTATTACCGTGTCGGATGGAAAGACC
ATTCACGATGAACTGGACATTGTCGAGGGTATGAAATTCGACAGGGGGTA
CATCTCACCGTATTTCGTCACGGACCCTAAATCCCAGAAGGTCGAGTTCG
AGAACGCCTTTGTCTTGGCAGTCGAAAAGAAGGTCTCCACCGTGGCTTCC
ATTCTTAATATCTTGGAAGGTGTGATGAAGTCACAGCGCCCATTGCTCAT
CATTGCTGAGGATGTGGAGAGTGAGGCGCTTGCTACGCTCGTTGTCAACA
AGCTTCGTCTAGGCATTAAAGTGTGTGCAGTCAAGGCTCCTGGATTCGGT
GACCGTCGCAAGGCCAACCTCGAGGACATCTCCATCATGACGGGCGCCCA
ACTGGTGAGCAGCGACCTTGACATGAAGCTGGAAGATGTCACTCTCAATG
ATCTTGGAACAGCGAAGAAAATCACCATCACCAAGGATGACACCATCATT
CTTGACGGCAGTGGTGACAAGAAGGCGATCAATGACAGATGTGACATGTT
GAGGGATTCTCTTGAAACTGCTACAAGCGAGTATGACAAGGAAAAGATTC
ATGAAAGACTGGCCAAGCTAAGTGGCGGTGTGGCGGTGATTAAGGTCGGT
GGAGTGAGTGAAGTGGAAGTTTCTGAGAGAAAAGATAGGTTTACAGACGC
TCTGAATGCAACTCGTGCTGCCGTGGAGGAAGGAATCGTGCCAGGAGGTG
GTACCGCATTGTTGCTTTCCTCGAGGGACGCGTTGAAGAATCTCAAGGGC
GCCAATTTTGATCAAGACGTTGGAATCGATATCGTGCGAAAGGCGTTGAG
AGTACCGTGTTACTCGATTGCCCGCAACGCCGGAGTCGAAGGGTCTGTAG
TTGTAGAGAGGTTACTGAATCATGAAGGTGATTCTCCACTGGGTTACAAC
GCCCAGACCGGGGAATACACAGATCTTGTGAGGGCTGGTATTATCGATCC
GACAAAGGTGCAGAGAACTGCACTGGAACAGGCAGCGTCCGTTGCAGGGC
TCATGGCTACAACCGAATGTATGGTAGTGGAAAACCCAAAGGAGGAGTCA
GCTGACATGGCCGCCATGGCCGCAGCCGCTGGAGGTGGCATGGGTGGAGG
CATGGGCTTCTAA
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