Gcaud8423.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8423.t1
Unique Name	Gcaud8423.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	265

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1630_length_9372_cov_4.968538	contig	NODE_1630_length_9372_cov_4.968538:5651..6445 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	329726.AM1_0173
PFAMs	HemolysinCabind
Max annot lvl	1117\|Cyanobacteria
Evalue	1.47e-40
EggNOG OGs	COG2931@1\|root,COG2931@2\|Bacteria,1G449@1117\|Cyanobacteria
Description	Haemolysin-type calcium-binding repeat (2 copies)
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8423	Gcaud8423	Gracilaria caudata M_176_S67 male	gene	NODE_1630_length_9372_cov_4.968538 5651..6445 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8423.t1.stop1	Gcaud8423.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1630_length_9372_cov_4.968538 5651..5653 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8423.t1.CDS1	Gcaud8423.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1630_length_9372_cov_4.968538 5651..6445 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8423.t1.exon1	Gcaud8423.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1630_length_9372_cov_4.968538 5651..6445 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8423.t1.start1	Gcaud8423.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1630_length_9372_cov_4.968538 6443..6445 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8423.t1	Gcaud8423.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1630_length_9372_cov_4.968538 5651..6445 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1630_length_9372_cov_4.968538:5651..6445-
coding sequence from alignment at NODE_1630_length_9372_cov_4.968538:5651..6445-

mRNA sequence

>Gcaud8423.t1 ID=Gcaud8423.t1|Name=Gcaud8423.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=265bp
MKYLIYLLSLSALLAYALASNKHCPNYRTKVLTHTAHDADGLTSVVEDYK
NLLGGEDNGNNPGPLPSGQRSINWDAGIVPFNMPGDFFNTVVTRGAVFKS
RGGKFAVSNPASPPPEDDRFSSLLPAFVTKQFRRFSLERLFTPVLSNRLV
ATFQIPATRDAAKVSGFGAVFTDVDLPRRTHMVYFDENGCRIAKVQVPPK
NKGLSFAGLVVVDPHNPKKTLPVISKVKIQLGNVSIRGFFRRHFRRFFRD
VVVMDDLFYGEPMH*

spliced messenger RNA

>Gcaud8423.t1 ID=Gcaud8423.t1|Name=Gcaud8423.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=795bp|location=Sequence derived from alignment at NODE_1630_length_9372_cov_4.968538:5651..6445- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTACCTGATCTATCTTTTGAGCTTATCGGCTCTCCTCGCCTACGC
ACTCGCGTCAAACAAACACTGCCCAAATTATCGCACCAAGGTCCTTACCC
ATACTGCTCATGATGCCGACGGTCTGACCTCTGTCGTCGAGGACTACAAG
AACCTGCTCGGTGGAGAAGACAACGGAAACAACCCAGGTCCCCTTCCCTC
CGGTCAACGATCTATCAACTGGGATGCTGGCATTGTACCCTTCAACATGC
CCGGTGATTTCTTCAACACGGTTGTCACTCGTGGCGCCGTCTTCAAATCC
CGTGGAGGTAAATTTGCCGTTTCTAACCCCGCTTCCCCACCACCCGAAGA
TGATCGCTTCTCATCTTTGCTCCCTGCTTTCGTCACCAAACAGTTCCGTC
GCTTCTCGCTCGAGCGCCTTTTCACACCCGTCCTGTCCAATCGTCTCGTG
GCAACGTTCCAGATCCCCGCAACCCGTGATGCTGCAAAAGTGAGCGGGTT
TGGGGCTGTGTTCACTGACGTAGATCTTCCGCGCCGTACGCATATGGTTT
ACTTTGATGAAAACGGGTGTCGTATTGCAAAAGTTCAGGTGCCGCCAAAG
AATAAGGGACTGAGCTTTGCTGGGTTGGTTGTAGTTGACCCACACAACCC
GAAGAAGACGTTGCCTGTCATTTCTAAGGTGAAAATCCAACTTGGAAACG
TGTCGATTCGTGGTTTCTTCCGTCGCCACTTTAGACGCTTCTTCAGAGAC
GTAGTTGTTATGGATGACCTCTTCTACGGCGAACCCATGCATTAA

protein sequence of Gcaud8423.t1

>Gcaud8423.t1 ID=Gcaud8423.t1|Name=Gcaud8423.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=265bp
MKYLIYLLSLSALLAYALASNKHCPNYRTKVLTHTAHDADGLTSVVEDYK
NLLGGEDNGNNPGPLPSGQRSINWDAGIVPFNMPGDFFNTVVTRGAVFKS
RGGKFAVSNPASPPPEDDRFSSLLPAFVTKQFRRFSLERLFTPVLSNRLV
ATFQIPATRDAAKVSGFGAVFTDVDLPRRTHMVYFDENGCRIAKVQVPPK
NKGLSFAGLVVVDPHNPKKTLPVISKVKIQLGNVSIRGFFRRHFRRFFRD
VVVMDDLFYGEPMH*

mRNA from alignment at NODE_1630_length_9372_cov_4.968538:5651..6445-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8423.t1 ID=Gcaud8423.t1|Name=Gcaud8423.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=795bp|location=Sequence derived from alignment at NODE_1630_length_9372_cov_4.968538:5651..6445- (Gracilaria caudata M_176_S67 male)
ATGAAGTACCTGATCTATCTTTTGAGCTTATCGGCTCTCCTCGCCTACGC
ACTCGCGTCAAACAAACACTGCCCAAATTATCGCACCAAGGTCCTTACCC
ATACTGCTCATGATGCCGACGGTCTGACCTCTGTCGTCGAGGACTACAAG
AACCTGCTCGGTGGAGAAGACAACGGAAACAACCCAGGTCCCCTTCCCTC
CGGTCAACGATCTATCAACTGGGATGCTGGCATTGTACCCTTCAACATGC
CCGGTGATTTCTTCAACACGGTTGTCACTCGTGGCGCCGTCTTCAAATCC
CGTGGAGGTAAATTTGCCGTTTCTAACCCCGCTTCCCCACCACCCGAAGA
TGATCGCTTCTCATCTTTGCTCCCTGCTTTCGTCACCAAACAGTTCCGTC
GCTTCTCGCTCGAGCGCCTTTTCACACCCGTCCTGTCCAATCGTCTCGTG
GCAACGTTCCAGATCCCCGCAACCCGTGATGCTGCAAAAGTGAGCGGGTT
TGGGGCTGTGTTCACTGACGTAGATCTTCCGCGCCGTACGCATATGGTTT
ACTTTGATGAAAACGGGTGTCGTATTGCAAAAGTTCAGGTGCCGCCAAAG
AATAAGGGACTGAGCTTTGCTGGGTTGGTTGTAGTTGACCCACACAACCC
GAAGAAGACGTTGCCTGTCATTTCTAAGGTGAAAATCCAACTTGGAAACG
TGTCGATTCGTGGTTTCTTCCGTCGCCACTTTAGACGCTTCTTCAGAGAC
GTAGTTGTTATGGATGACCTCTTCTACGGCGAACCCATGCATTAA

Coding sequence (CDS) from alignment at NODE_1630_length_9372_cov_4.968538:5651..6445-

>Gcaud8423.t1 ID=Gcaud8423.t1|Name=Gcaud8423.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=795bp|location=Sequence derived from alignment at NODE_1630_length_9372_cov_4.968538:5651..6445- (Gracilaria caudata M_176_S67 male)
ATGAAGTACCTGATCTATCTTTTGAGCTTATCGGCTCTCCTCGCCTACGC
ACTCGCGTCAAACAAACACTGCCCAAATTATCGCACCAAGGTCCTTACCC
ATACTGCTCATGATGCCGACGGTCTGACCTCTGTCGTCGAGGACTACAAG
AACCTGCTCGGTGGAGAAGACAACGGAAACAACCCAGGTCCCCTTCCCTC
CGGTCAACGATCTATCAACTGGGATGCTGGCATTGTACCCTTCAACATGC
CCGGTGATTTCTTCAACACGGTTGTCACTCGTGGCGCCGTCTTCAAATCC
CGTGGAGGTAAATTTGCCGTTTCTAACCCCGCTTCCCCACCACCCGAAGA
TGATCGCTTCTCATCTTTGCTCCCTGCTTTCGTCACCAAACAGTTCCGTC
GCTTCTCGCTCGAGCGCCTTTTCACACCCGTCCTGTCCAATCGTCTCGTG
GCAACGTTCCAGATCCCCGCAACCCGTGATGCTGCAAAAGTGAGCGGGTT
TGGGGCTGTGTTCACTGACGTAGATCTTCCGCGCCGTACGCATATGGTTT
ACTTTGATGAAAACGGGTGTCGTATTGCAAAAGTTCAGGTGCCGCCAAAG
AATAAGGGACTGAGCTTTGCTGGGTTGGTTGTAGTTGACCCACACAACCC
GAAGAAGACGTTGCCTGTCATTTCTAAGGTGAAAATCCAACTTGGAAACG
TGTCGATTCGTGGTTTCTTCCGTCGCCACTTTAGACGCTTCTTCAGAGAC
GTAGTTGTTATGGATGACCTCTTCTACGGCGAACCCATGCATTAA