Gcaud8548.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8548.t1
Unique Name	Gcaud8548.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	588

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_162_length_42220_cov_4.454604	contig	NODE_162_length_42220_cov_4.454604:7913..9676 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8548	Gcaud8548	Gracilaria caudata M_176_S67 male	gene	NODE_162_length_42220_cov_4.454604 7913..9676 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8548.t1.start1	Gcaud8548.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_162_length_42220_cov_4.454604 7913..7915 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8548.t1.CDS1	Gcaud8548.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_162_length_42220_cov_4.454604 7913..9676 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8548.t1.exon1	Gcaud8548.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_162_length_42220_cov_4.454604 7913..9676 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8548.t1.stop1	Gcaud8548.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_162_length_42220_cov_4.454604 9674..9676 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8548.t1	Gcaud8548.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_162_length_42220_cov_4.454604 7913..9676 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_162_length_42220_cov_4.454604:7913..9676+
coding sequence from alignment at NODE_162_length_42220_cov_4.454604:7913..9676+

mRNA sequence

>Gcaud8548.t1 ID=Gcaud8548.t1|Name=Gcaud8548.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=588bp
MTHPKRTKRPRKAAARETSEDKRRRNVLSHQREVLKIYVRLALQKAAVKW
LKPQARSRTPIERGDEDIAQEWLKEIYREEKQKQRTIRKESEERMITRAL
ESLELNREKLCEETLSLFARRLLKIVPELPKLFNMVRLSNKLSIKQVKYG
EMETARAMAWCAYGNKTPSPEILSRAYDLVEFESGRRVQSKPRKQERKDK
RILRKRNVTVDSMDEILAMSLVELADRAMYCVEGTMLYSDQSTAVCQLDA
FVAEITRCAIHLNPDLREIVRRCIDEKMDKGKLIFKLERDEKLISIIWGD
KERLKEWYQTVILLRRQGVTNLLLCIMHCDYGQFEVLGLRYTFGRGKLKE
QHSQPVPWYRSEAMELDKEFQNFRTSVYMKDGTLMKKEPRVQVMVRILLL
VVYAVTAIVATVVVSVKGVTDGLVGYLEVISLVILGLIGTLVSMWQCMSS
QTRPIRNAFHGCKEVHCIEDLLDVSYRRVFRKNTDDEKRLERFRMWLAGN
GYGENLPGIEVFFSGKDRYPLYDPKGIRVDYLSKVTLCDGYFLVRRPDEK
AWLLRRHGDNLRVEDVCDGHAVIACLSMRSTMRVGGD*

spliced messenger RNA

>Gcaud8548.t1 ID=Gcaud8548.t1|Name=Gcaud8548.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1764bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:7913..9676+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCACCCGAAACGCACAAAACGCCCGCGAAAAGCAGCGGCGCGAGA
GACAAGCGAGGACAAAAGACGAAGAAACGTGCTTTCACATCAACGTGAAG
TTCTCAAGATATACGTGCGTCTGGCTCTGCAAAAGGCGGCTGTAAAATGG
CTTAAGCCTCAAGCTCGGTCAAGAACACCGATAGAACGCGGCGATGAAGA
TATTGCTCAAGAATGGTTGAAAGAAATTTACCGTGAGGAGAAACAGAAAC
AACGCACGATTCGAAAGGAAAGTGAAGAACGGATGATAACAAGAGCTCTT
GAGTCTCTAGAATTGAATAGAGAAAAGCTTTGTGAGGAAACGCTGAGCTT
GTTCGCAAGGAGGTTGTTGAAAATTGTACCCGAGCTACCCAAACTGTTCA
ACATGGTACGCTTGTCGAACAAGCTTTCTATCAAGCAAGTGAAATACGGC
GAAATGGAAACCGCTCGTGCTATGGCTTGGTGTGCGTATGGGAACAAAAC
GCCGTCGCCGGAAATACTATCGCGCGCTTATGATCTGGTTGAGTTTGAGA
GTGGACGTAGGGTGCAGTCGAAACCAAGGAAACAGGAGAGAAAGGACAAA
AGAATTCTTCGTAAGAGAAACGTAACAGTGGATTCGATGGATGAAATCCT
GGCCATGTCGTTGGTGGAGTTGGCGGATCGAGCGATGTATTGCGTGGAGG
GCACGATGCTGTACTCGGACCAGAGCACTGCTGTTTGTCAGTTGGATGCT
TTCGTTGCGGAAATCACTCGTTGCGCAATTCATCTGAACCCCGACCTACG
GGAGATTGTGAGAAGATGTATCGACGAGAAGATGGACAAGGGCAAGCTGA
TTTTCAAACTGGAAAGAGACGAGAAGTTAATCAGCATCATATGGGGCGAC
AAGGAGAGATTGAAGGAGTGGTACCAAACGGTGATCCTGCTTCGACGGCA
GGGGGTGACAAACCTGCTGCTGTGTATCATGCACTGCGATTATGGGCAGT
TTGAGGTGCTGGGACTTCGATACACGTTTGGACGGGGAAAGTTGAAAGAG
CAGCACTCGCAGCCTGTGCCGTGGTATCGCAGCGAGGCGATGGAATTGGA
CAAAGAGTTTCAGAACTTCAGGACATCGGTGTACATGAAGGACGGAACGC
TGATGAAGAAGGAACCGCGCGTTCAGGTGATGGTGCGCATTTTGTTGCTG
GTGGTGTACGCGGTGACGGCAATAGTGGCGACGGTGGTGGTGAGTGTGAA
GGGGGTGACAGATGGGCTGGTGGGATATCTGGAAGTGATATCGCTGGTCA
TACTGGGGCTGATCGGCACATTGGTGTCAATGTGGCAGTGTATGTCAAGC
CAGACGCGGCCCATCCGCAACGCGTTTCACGGGTGCAAGGAGGTGCATTG
CATCGAGGACCTGCTGGACGTGTCGTACCGACGGGTGTTCCGAAAGAACA
CCGACGATGAGAAGCGGTTGGAGCGCTTCCGCATGTGGCTGGCTGGCAAC
GGCTACGGCGAGAACCTTCCGGGCATCGAGGTGTTCTTCTCGGGCAAGGA
CCGATACCCGCTGTACGACCCCAAGGGCATCCGCGTGGACTATCTGAGTA
AGGTGACGCTGTGCGACGGCTACTTCTTGGTGCGGCGGCCGGACGAGAAG
GCGTGGCTGCTGAGGCGGCACGGCGACAACCTGCGTGTGGAGGATGTGTG
CGACGGGCATGCGGTGATTGCGTGCCTGTCCATGCGCAGCACCATGCGCG
TGGGAGGCGACTGA

protein sequence of Gcaud8548.t1

>Gcaud8548.t1 ID=Gcaud8548.t1|Name=Gcaud8548.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=588bp
MTHPKRTKRPRKAAARETSEDKRRRNVLSHQREVLKIYVRLALQKAAVKW
LKPQARSRTPIERGDEDIAQEWLKEIYREEKQKQRTIRKESEERMITRAL
ESLELNREKLCEETLSLFARRLLKIVPELPKLFNMVRLSNKLSIKQVKYG
EMETARAMAWCAYGNKTPSPEILSRAYDLVEFESGRRVQSKPRKQERKDK
RILRKRNVTVDSMDEILAMSLVELADRAMYCVEGTMLYSDQSTAVCQLDA
FVAEITRCAIHLNPDLREIVRRCIDEKMDKGKLIFKLERDEKLISIIWGD
KERLKEWYQTVILLRRQGVTNLLLCIMHCDYGQFEVLGLRYTFGRGKLKE
QHSQPVPWYRSEAMELDKEFQNFRTSVYMKDGTLMKKEPRVQVMVRILLL
VVYAVTAIVATVVVSVKGVTDGLVGYLEVISLVILGLIGTLVSMWQCMSS
QTRPIRNAFHGCKEVHCIEDLLDVSYRRVFRKNTDDEKRLERFRMWLAGN
GYGENLPGIEVFFSGKDRYPLYDPKGIRVDYLSKVTLCDGYFLVRRPDEK
AWLLRRHGDNLRVEDVCDGHAVIACLSMRSTMRVGGD*

mRNA from alignment at NODE_162_length_42220_cov_4.454604:7913..9676+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8548.t1 ID=Gcaud8548.t1|Name=Gcaud8548.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1764bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:7913..9676+ (Gracilaria caudata M_176_S67 male)
ATGACGCACCCGAAACGCACAAAACGCCCGCGAAAAGCAGCGGCGCGAGA
GACAAGCGAGGACAAAAGACGAAGAAACGTGCTTTCACATCAACGTGAAG
TTCTCAAGATATACGTGCGTCTGGCTCTGCAAAAGGCGGCTGTAAAATGG
CTTAAGCCTCAAGCTCGGTCAAGAACACCGATAGAACGCGGCGATGAAGA
TATTGCTCAAGAATGGTTGAAAGAAATTTACCGTGAGGAGAAACAGAAAC
AACGCACGATTCGAAAGGAAAGTGAAGAACGGATGATAACAAGAGCTCTT
GAGTCTCTAGAATTGAATAGAGAAAAGCTTTGTGAGGAAACGCTGAGCTT
GTTCGCAAGGAGGTTGTTGAAAATTGTACCCGAGCTACCCAAACTGTTCA
ACATGGTACGCTTGTCGAACAAGCTTTCTATCAAGCAAGTGAAATACGGC
GAAATGGAAACCGCTCGTGCTATGGCTTGGTGTGCGTATGGGAACAAAAC
GCCGTCGCCGGAAATACTATCGCGCGCTTATGATCTGGTTGAGTTTGAGA
GTGGACGTAGGGTGCAGTCGAAACCAAGGAAACAGGAGAGAAAGGACAAA
AGAATTCTTCGTAAGAGAAACGTAACAGTGGATTCGATGGATGAAATCCT
GGCCATGTCGTTGGTGGAGTTGGCGGATCGAGCGATGTATTGCGTGGAGG
GCACGATGCTGTACTCGGACCAGAGCACTGCTGTTTGTCAGTTGGATGCT
TTCGTTGCGGAAATCACTCGTTGCGCAATTCATCTGAACCCCGACCTACG
GGAGATTGTGAGAAGATGTATCGACGAGAAGATGGACAAGGGCAAGCTGA
TTTTCAAACTGGAAAGAGACGAGAAGTTAATCAGCATCATATGGGGCGAC
AAGGAGAGATTGAAGGAGTGGTACCAAACGGTGATCCTGCTTCGACGGCA
GGGGGTGACAAACCTGCTGCTGTGTATCATGCACTGCGATTATGGGCAGT
TTGAGGTGCTGGGACTTCGATACACGTTTGGACGGGGAAAGTTGAAAGAG
CAGCACTCGCAGCCTGTGCCGTGGTATCGCAGCGAGGCGATGGAATTGGA
CAAAGAGTTTCAGAACTTCAGGACATCGGTGTACATGAAGGACGGAACGC
TGATGAAGAAGGAACCGCGCGTTCAGGTGATGGTGCGCATTTTGTTGCTG
GTGGTGTACGCGGTGACGGCAATAGTGGCGACGGTGGTGGTGAGTGTGAA
GGGGGTGACAGATGGGCTGGTGGGATATCTGGAAGTGATATCGCTGGTCA
TACTGGGGCTGATCGGCACATTGGTGTCAATGTGGCAGTGTATGTCAAGC
CAGACGCGGCCCATCCGCAACGCGTTTCACGGGTGCAAGGAGGTGCATTG
CATCGAGGACCTGCTGGACGTGTCGTACCGACGGGTGTTCCGAAAGAACA
CCGACGATGAGAAGCGGTTGGAGCGCTTCCGCATGTGGCTGGCTGGCAAC
GGCTACGGCGAGAACCTTCCGGGCATCGAGGTGTTCTTCTCGGGCAAGGA
CCGATACCCGCTGTACGACCCCAAGGGCATCCGCGTGGACTATCTGAGTA
AGGTGACGCTGTGCGACGGCTACTTCTTGGTGCGGCGGCCGGACGAGAAG
GCGTGGCTGCTGAGGCGGCACGGCGACAACCTGCGTGTGGAGGATGTGTG
CGACGGGCATGCGGTGATTGCGTGCCTGTCCATGCGCAGCACCATGCGCG
TGGGAGGCGACTGA

Coding sequence (CDS) from alignment at NODE_162_length_42220_cov_4.454604:7913..9676+

>Gcaud8548.t1 ID=Gcaud8548.t1|Name=Gcaud8548.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1764bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:7913..9676+ (Gracilaria caudata M_176_S67 male)
ATGACGCACCCGAAACGCACAAAACGCCCGCGAAAAGCAGCGGCGCGAGA
GACAAGCGAGGACAAAAGACGAAGAAACGTGCTTTCACATCAACGTGAAG
TTCTCAAGATATACGTGCGTCTGGCTCTGCAAAAGGCGGCTGTAAAATGG
CTTAAGCCTCAAGCTCGGTCAAGAACACCGATAGAACGCGGCGATGAAGA
TATTGCTCAAGAATGGTTGAAAGAAATTTACCGTGAGGAGAAACAGAAAC
AACGCACGATTCGAAAGGAAAGTGAAGAACGGATGATAACAAGAGCTCTT
GAGTCTCTAGAATTGAATAGAGAAAAGCTTTGTGAGGAAACGCTGAGCTT
GTTCGCAAGGAGGTTGTTGAAAATTGTACCCGAGCTACCCAAACTGTTCA
ACATGGTACGCTTGTCGAACAAGCTTTCTATCAAGCAAGTGAAATACGGC
GAAATGGAAACCGCTCGTGCTATGGCTTGGTGTGCGTATGGGAACAAAAC
GCCGTCGCCGGAAATACTATCGCGCGCTTATGATCTGGTTGAGTTTGAGA
GTGGACGTAGGGTGCAGTCGAAACCAAGGAAACAGGAGAGAAAGGACAAA
AGAATTCTTCGTAAGAGAAACGTAACAGTGGATTCGATGGATGAAATCCT
GGCCATGTCGTTGGTGGAGTTGGCGGATCGAGCGATGTATTGCGTGGAGG
GCACGATGCTGTACTCGGACCAGAGCACTGCTGTTTGTCAGTTGGATGCT
TTCGTTGCGGAAATCACTCGTTGCGCAATTCATCTGAACCCCGACCTACG
GGAGATTGTGAGAAGATGTATCGACGAGAAGATGGACAAGGGCAAGCTGA
TTTTCAAACTGGAAAGAGACGAGAAGTTAATCAGCATCATATGGGGCGAC
AAGGAGAGATTGAAGGAGTGGTACCAAACGGTGATCCTGCTTCGACGGCA
GGGGGTGACAAACCTGCTGCTGTGTATCATGCACTGCGATTATGGGCAGT
TTGAGGTGCTGGGACTTCGATACACGTTTGGACGGGGAAAGTTGAAAGAG
CAGCACTCGCAGCCTGTGCCGTGGTATCGCAGCGAGGCGATGGAATTGGA
CAAAGAGTTTCAGAACTTCAGGACATCGGTGTACATGAAGGACGGAACGC
TGATGAAGAAGGAACCGCGCGTTCAGGTGATGGTGCGCATTTTGTTGCTG
GTGGTGTACGCGGTGACGGCAATAGTGGCGACGGTGGTGGTGAGTGTGAA
GGGGGTGACAGATGGGCTGGTGGGATATCTGGAAGTGATATCGCTGGTCA
TACTGGGGCTGATCGGCACATTGGTGTCAATGTGGCAGTGTATGTCAAGC
CAGACGCGGCCCATCCGCAACGCGTTTCACGGGTGCAAGGAGGTGCATTG
CATCGAGGACCTGCTGGACGTGTCGTACCGACGGGTGTTCCGAAAGAACA
CCGACGATGAGAAGCGGTTGGAGCGCTTCCGCATGTGGCTGGCTGGCAAC
GGCTACGGCGAGAACCTTCCGGGCATCGAGGTGTTCTTCTCGGGCAAGGA
CCGATACCCGCTGTACGACCCCAAGGGCATCCGCGTGGACTATCTGAGTA
AGGTGACGCTGTGCGACGGCTACTTCTTGGTGCGGCGGCCGGACGAGAAG
GCGTGGCTGCTGAGGCGGCACGGCGACAACCTGCGTGTGGAGGATGTGTG
CGACGGGCATGCGGTGATTGCGTGCCTGTCCATGCGCAGCACCATGCGCG
TGGGAGGCGACTGA