Gcaud8544.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8544.t1
Unique Name	Gcaud8544.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	616

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_162_length_42220_cov_4.454604	contig	NODE_162_length_42220_cov_4.454604:61..1908 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	136037.KDR02319
Preferred name	CAMKK2
PFAMs	Pkinase
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K00908,ko:K05215,ko:K07359
KEGG TC	1.A.7.1.1
KEGG Pathway	ko04020,ko04080,ko04140,ko04152,ko04211,ko04611,ko04920,ko04921,ko05034,map04020,map04080,map04140,map04152,map04211,map04611,map04920,map04921,map05034
GOs	GO:0000165,GO:0000302,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0004713,GO:0005488,GO:0005509,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0008047,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010467,GO:0010468,GO:0010506,GO:0010508,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0010638,GO:0010821,GO:0010822,GO:0016070,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018107,GO:0018108,GO:0018130,GO:0018193,GO:0018209,GO:0018210,GO:0018212,GO:0019207,GO:0019209,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019722,GO:0019887,GO:0019932,GO:0023014,GO:0023052,GO:0030234,GO:0030295,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031399,GO:0031401,GO:0032147,GO:0032268,GO:0032270,GO:0032774,GO:0032793,GO:0033043,GO:0033554,GO:0033674,GO:0034599,GO:0034614,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0036211,GO:0042221,GO:0042325,GO:0042327,GO:0042995,GO:0043085,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045937,GO:0046483,GO:0046777,GO:0046872,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051716,GO:0060255,GO:0061762,GO:0065007,GO:0065009,GO:0070887,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0098772,GO:0099004,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901700,GO:1901701,GO:1902680,GO:1903146,GO:1903506,GO:1903508,GO:1903599,GO:2000112,GO:2001141
Evalue	7.7e-51
EggNOG OGs	KOG0585@1\|root,KOG0585@2759\|Eukaryota,38C0I@33154\|Opisthokonta,3BB86@33208\|Metazoa,3CUWI@33213\|Bilateria,41Y37@6656\|Arthropoda,3SHUC@50557\|Insecta
EC	2.7.11.17
Description	protein serine threonine kinase activity. It is involved in the biological process described with protein phosphorylation
COG category	T
BRITE	ko00000,ko00001,ko01000,ko01001,ko04040

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8544	Gcaud8544	Gracilaria caudata M_176_S67 male	gene	NODE_162_length_42220_cov_4.454604 61..1908 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8544.t1.start1	Gcaud8544.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_162_length_42220_cov_4.454604 61..63 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8544.t1.CDS1	Gcaud8544.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_162_length_42220_cov_4.454604 61..1908 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8544.t1.exon1	Gcaud8544.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_162_length_42220_cov_4.454604 61..1908 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8544.t1.stop1	Gcaud8544.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_162_length_42220_cov_4.454604 1906..1908 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8544.t1	Gcaud8544.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_162_length_42220_cov_4.454604 61..1908 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_162_length_42220_cov_4.454604:61..1908+
coding sequence from alignment at NODE_162_length_42220_cov_4.454604:61..1908+

mRNA sequence

>Gcaud8544.t1 ID=Gcaud8544.t1|Name=Gcaud8544.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=616bp
MADEGRAHDVDALEDALIVSPPSAHYRRRSSPIAGPSAPPPYYQPPPPER
SHSQASASYDDEHDDDDFSRTPTGSELDDDDFTDERNSLSVDDDDEHADH
HANDEDDRRLVRQNSSFARLSADSWLTVVSEYERDGPNENLLFSQVEEEP
STDPIEEAAARQMHAVSALEGRSVLDCVVDLLRGTRAQKRKMLRRYGERW
IWLGEDLMSLNWKSKKRGVDNGRLNLTRVKKLRSADRELIIETNDSKKLA
LMLATRTESVTWLSGLSCLVPKKAKVSESNRVLKERINYDPLKDSWRGKA
VSTRKRVNEYIMLGGIGRGSFGKVKLALSTQDKRFYAVKVVSNVKKSGAA
SIGNREEQAVLRKLDHPNIVSHRDILLDRDNDGYVIVVEYMARGVVMDSS
KLEGVKPLSEDGVREIMRDVVSGLEYLHHQRIAHRDIKPDNLLRAGDGTV
KVSDFGEARMYDVSSEDPRSKSPAPGTPAFIAPELCMSERSPKAPPESYA
ADIWSLGASLFYMVYGRAPFLAKNVFEIYDCICTHRLRFPDQPKVSRKLK
DLIKKMLVKEPKNRATLQDVARHAWFNERVVQKEELKKIRITPADIESAI
GVANWNVPPGREDND*

spliced messenger RNA

>Gcaud8544.t1 ID=Gcaud8544.t1|Name=Gcaud8544.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1848bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:61..1908+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGATGAAGGCCGTGCGCACGACGTCGACGCGCTGGAGGACGcgct
catcgtctcgccgccctccgcgcactatcgccgacgctcgtcgcccatcg
ccggcccctccgcgccgccgccttactaccaaccgccgccgccCGAACGC
TCGCACAGTCAAGCATCCGCCAGTTATGACGACGAACACGACGATGACGA
TTTCTCGCGCACGCCCACCGGCTCCGAGTTGGATGACGACGACTTTACGG
ACGAGCGCAACTCGCTTTCGGTcgatgacgacgacgaacacgccgaccac
cacgccaatgacgaggatgacCGTCGTCTCGTGCGACAAAACTCCTCGTT
TGCGCGTCTGTCCGCCGATTCGTGGCTCACCGTTGTCAGTGAGTACGAGC
GCGACGGACCCAACGAAAACCTGCTGTTCTCGCAGGTGGAGGAAGAGCCC
AGTACCGACCCTATCGAAGAAGCGGCCGCACGCCAGATGCACGCCGTGTC
CGCGCTGGAAGGTCGCTCCGTTCTCGACTGTGTGGTGGACCTCTTACGCG
GCACGCGCGCACAAAAGCGCAAGATGTTACGTCGTTACGGCGAGCGATGG
ATTTGGCTGGGCGAAGATCTCATGTCTCTCAACTGGAAGTCCAAGAAACG
CGGCGTGGATAACGGAAGACTCAACCTCACGCGCGTCAAAAAGCTGCGCT
CCGCGGATAGAGAGCTCATTATCGAGACCAATGACAGTAAGAAATTGGCG
CTCATGCTTGCGACGCGCACGGAGTCTGTCACCTGGTTGTCCGGTCTTAG
TTGCCTTGTGCCGAAGAAGGCCAAGGTGTCCGAATCGAACCGCGTGCTCA
AGGAGCGTATCAATTACGACCCGCTCAAGGACTCGTGGCGCGGAAAGGCG
GTGTCCACGCGCAAGCGCGTCAACGAGTACATCATGCTGGGCGGCATTGG
TCGCGGATCGTTCGGCAAAGTGAAGCTCGCGCTGTCCACACAGGACAAAC
GCTTCTACGCCGTCAAAGTGGTGTCCAACGTCAAGAAGAGCGGCGCCGCC
TCCATTGGCAACCGTGAGGAGCAGGCCGTGTTGCGAAAACTTGACCACCC
CAACATCGTCAGTCACCGTGACATTTTGCTGGACCGCGATAATGACGGTT
ACGTCATTGTGGTGGAGTACATGGCGCGCGGCGTCGTGATGGATTCCAGT
AAGCTGGAAGGCGTCAAACCGTTGTCGGAAGACGGTGTGCGCGAGATCAT
GCGAGACGTTGTGTCGGGTCTTGAATATCTTCATCACCAACGCATTGCTC
ACCGTGACATCAAGCCGGACAACCTTCTGCGCGCGGGCGATGGCACCGTC
AAGGTGTCAGACTTTGGAGAAGCGCGTATGTACGACGTATCCAGCGAGGA
CCCGCGCTCCAAATCGCCAGCGCCCGGTACTCCAGCGTTCATTGCGCCGG
AATTATGCATGTCAGAAAGAAGTCCCAAGGCGCCGCCCGAATCGTATGCT
GCAGACATCTGGTCGTTGGGAGCGTCGTTGTTCTACATGGTGTACGGGCG
CGCGCCCTTCCTCGCCAAGAACGTGTTTGAGATTTACGACTGTATATGTA
CGCACCGGTTGCGCTTCCCTGACCAGCCCAAGGTGTCGAGAAAGCTCAAG
GATTTGATCAAGAAGATGTTGGTGAAGGAACCGAAAAACCGCGCCACATT
GCAGGATGTTGCACGGCATGCCTGGTTCAACGAGCGCGTGGTGCAGAAGG
AGGAACTCAAGAAGATTCGCATCACACCGGCCGACATTGAGTCCGCCATT
GGAGTGGCAAATTGGAACGTCCCTCCCGGGCGCGAGGACAATGACTAA

protein sequence of Gcaud8544.t1

>Gcaud8544.t1 ID=Gcaud8544.t1|Name=Gcaud8544.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=616bp
MADEGRAHDVDALEDALIVSPPSAHYRRRSSPIAGPSAPPPYYQPPPPER
SHSQASASYDDEHDDDDFSRTPTGSELDDDDFTDERNSLSVDDDDEHADH
HANDEDDRRLVRQNSSFARLSADSWLTVVSEYERDGPNENLLFSQVEEEP
STDPIEEAAARQMHAVSALEGRSVLDCVVDLLRGTRAQKRKMLRRYGERW
IWLGEDLMSLNWKSKKRGVDNGRLNLTRVKKLRSADRELIIETNDSKKLA
LMLATRTESVTWLSGLSCLVPKKAKVSESNRVLKERINYDPLKDSWRGKA
VSTRKRVNEYIMLGGIGRGSFGKVKLALSTQDKRFYAVKVVSNVKKSGAA
SIGNREEQAVLRKLDHPNIVSHRDILLDRDNDGYVIVVEYMARGVVMDSS
KLEGVKPLSEDGVREIMRDVVSGLEYLHHQRIAHRDIKPDNLLRAGDGTV
KVSDFGEARMYDVSSEDPRSKSPAPGTPAFIAPELCMSERSPKAPPESYA
ADIWSLGASLFYMVYGRAPFLAKNVFEIYDCICTHRLRFPDQPKVSRKLK
DLIKKMLVKEPKNRATLQDVARHAWFNERVVQKEELKKIRITPADIESAI
GVANWNVPPGREDND*

mRNA from alignment at NODE_162_length_42220_cov_4.454604:61..1908+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8544.t1 ID=Gcaud8544.t1|Name=Gcaud8544.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1848bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:61..1908+ (Gracilaria caudata M_176_S67 male)
ATGGCTGATGAAGGCCGTGCGCACGACGTCGACGCGCTGGAGGACGcgct
catcgtctcgccgccctccgcgcactatcgccgacgctcgtcgcccatcg
ccggcccctccgcgccgccgccttactaccaaccgccgccgccCGAACGC
TCGCACAGTCAAGCATCCGCCAGTTATGACGACGAACACGACGATGACGA
TTTCTCGCGCACGCCCACCGGCTCCGAGTTGGATGACGACGACTTTACGG
ACGAGCGCAACTCGCTTTCGGTcgatgacgacgacgaacacgccgaccac
cacgccaatgacgaggatgacCGTCGTCTCGTGCGACAAAACTCCTCGTT
TGCGCGTCTGTCCGCCGATTCGTGGCTCACCGTTGTCAGTGAGTACGAGC
GCGACGGACCCAACGAAAACCTGCTGTTCTCGCAGGTGGAGGAAGAGCCC
AGTACCGACCCTATCGAAGAAGCGGCCGCACGCCAGATGCACGCCGTGTC
CGCGCTGGAAGGTCGCTCCGTTCTCGACTGTGTGGTGGACCTCTTACGCG
GCACGCGCGCACAAAAGCGCAAGATGTTACGTCGTTACGGCGAGCGATGG
ATTTGGCTGGGCGAAGATCTCATGTCTCTCAACTGGAAGTCCAAGAAACG
CGGCGTGGATAACGGAAGACTCAACCTCACGCGCGTCAAAAAGCTGCGCT
CCGCGGATAGAGAGCTCATTATCGAGACCAATGACAGTAAGAAATTGGCG
CTCATGCTTGCGACGCGCACGGAGTCTGTCACCTGGTTGTCCGGTCTTAG
TTGCCTTGTGCCGAAGAAGGCCAAGGTGTCCGAATCGAACCGCGTGCTCA
AGGAGCGTATCAATTACGACCCGCTCAAGGACTCGTGGCGCGGAAAGGCG
GTGTCCACGCGCAAGCGCGTCAACGAGTACATCATGCTGGGCGGCATTGG
TCGCGGATCGTTCGGCAAAGTGAAGCTCGCGCTGTCCACACAGGACAAAC
GCTTCTACGCCGTCAAAGTGGTGTCCAACGTCAAGAAGAGCGGCGCCGCC
TCCATTGGCAACCGTGAGGAGCAGGCCGTGTTGCGAAAACTTGACCACCC
CAACATCGTCAGTCACCGTGACATTTTGCTGGACCGCGATAATGACGGTT
ACGTCATTGTGGTGGAGTACATGGCGCGCGGCGTCGTGATGGATTCCAGT
AAGCTGGAAGGCGTCAAACCGTTGTCGGAAGACGGTGTGCGCGAGATCAT
GCGAGACGTTGTGTCGGGTCTTGAATATCTTCATCACCAACGCATTGCTC
ACCGTGACATCAAGCCGGACAACCTTCTGCGCGCGGGCGATGGCACCGTC
AAGGTGTCAGACTTTGGAGAAGCGCGTATGTACGACGTATCCAGCGAGGA
CCCGCGCTCCAAATCGCCAGCGCCCGGTACTCCAGCGTTCATTGCGCCGG
AATTATGCATGTCAGAAAGAAGTCCCAAGGCGCCGCCCGAATCGTATGCT
GCAGACATCTGGTCGTTGGGAGCGTCGTTGTTCTACATGGTGTACGGGCG
CGCGCCCTTCCTCGCCAAGAACGTGTTTGAGATTTACGACTGTATATGTA
CGCACCGGTTGCGCTTCCCTGACCAGCCCAAGGTGTCGAGAAAGCTCAAG
GATTTGATCAAGAAGATGTTGGTGAAGGAACCGAAAAACCGCGCCACATT
GCAGGATGTTGCACGGCATGCCTGGTTCAACGAGCGCGTGGTGCAGAAGG
AGGAACTCAAGAAGATTCGCATCACACCGGCCGACATTGAGTCCGCCATT
GGAGTGGCAAATTGGAACGTCCCTCCCGGGCGCGAGGACAATGACTAA

Coding sequence (CDS) from alignment at NODE_162_length_42220_cov_4.454604:61..1908+

>Gcaud8544.t1 ID=Gcaud8544.t1|Name=Gcaud8544.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1848bp|location=Sequence derived from alignment at NODE_162_length_42220_cov_4.454604:61..1908+ (Gracilaria caudata M_176_S67 male)
ATGGCTGATGAAGGCCGTGCGCACGACGTCGACGCGCTGGAGGACGcgct
catcgtctcgccgccctccgcgcactatcgccgacgctcgtcgcccatcg
ccggcccctccgcgccgccgccttactaccaaccgccgccgccCGAACGC
TCGCACAGTCAAGCATCCGCCAGTTATGACGACGAACACGACGATGACGA
TTTCTCGCGCACGCCCACCGGCTCCGAGTTGGATGACGACGACTTTACGG
ACGAGCGCAACTCGCTTTCGGTcgatgacgacgacgaacacgccgaccac
cacgccaatgacgaggatgacCGTCGTCTCGTGCGACAAAACTCCTCGTT
TGCGCGTCTGTCCGCCGATTCGTGGCTCACCGTTGTCAGTGAGTACGAGC
GCGACGGACCCAACGAAAACCTGCTGTTCTCGCAGGTGGAGGAAGAGCCC
AGTACCGACCCTATCGAAGAAGCGGCCGCACGCCAGATGCACGCCGTGTC
CGCGCTGGAAGGTCGCTCCGTTCTCGACTGTGTGGTGGACCTCTTACGCG
GCACGCGCGCACAAAAGCGCAAGATGTTACGTCGTTACGGCGAGCGATGG
ATTTGGCTGGGCGAAGATCTCATGTCTCTCAACTGGAAGTCCAAGAAACG
CGGCGTGGATAACGGAAGACTCAACCTCACGCGCGTCAAAAAGCTGCGCT
CCGCGGATAGAGAGCTCATTATCGAGACCAATGACAGTAAGAAATTGGCG
CTCATGCTTGCGACGCGCACGGAGTCTGTCACCTGGTTGTCCGGTCTTAG
TTGCCTTGTGCCGAAGAAGGCCAAGGTGTCCGAATCGAACCGCGTGCTCA
AGGAGCGTATCAATTACGACCCGCTCAAGGACTCGTGGCGCGGAAAGGCG
GTGTCCACGCGCAAGCGCGTCAACGAGTACATCATGCTGGGCGGCATTGG
TCGCGGATCGTTCGGCAAAGTGAAGCTCGCGCTGTCCACACAGGACAAAC
GCTTCTACGCCGTCAAAGTGGTGTCCAACGTCAAGAAGAGCGGCGCCGCC
TCCATTGGCAACCGTGAGGAGCAGGCCGTGTTGCGAAAACTTGACCACCC
CAACATCGTCAGTCACCGTGACATTTTGCTGGACCGCGATAATGACGGTT
ACGTCATTGTGGTGGAGTACATGGCGCGCGGCGTCGTGATGGATTCCAGT
AAGCTGGAAGGCGTCAAACCGTTGTCGGAAGACGGTGTGCGCGAGATCAT
GCGAGACGTTGTGTCGGGTCTTGAATATCTTCATCACCAACGCATTGCTC
ACCGTGACATCAAGCCGGACAACCTTCTGCGCGCGGGCGATGGCACCGTC
AAGGTGTCAGACTTTGGAGAAGCGCGTATGTACGACGTATCCAGCGAGGA
CCCGCGCTCCAAATCGCCAGCGCCCGGTACTCCAGCGTTCATTGCGCCGG
AATTATGCATGTCAGAAAGAAGTCCCAAGGCGCCGCCCGAATCGTATGCT
GCAGACATCTGGTCGTTGGGAGCGTCGTTGTTCTACATGGTGTACGGGCG
CGCGCCCTTCCTCGCCAAGAACGTGTTTGAGATTTACGACTGTATATGTA
CGCACCGGTTGCGCTTCCCTGACCAGCCCAAGGTGTCGAGAAAGCTCAAG
GATTTGATCAAGAAGATGTTGGTGAAGGAACCGAAAAACCGCGCCACATT
GCAGGATGTTGCACGGCATGCCTGGTTCAACGAGCGCGTGGTGCAGAAGG
AGGAACTCAAGAAGATTCGCATCACACCGGCCGACATTGAGTCCGCCATT
GGAGTGGCAAATTGGAACGTCCCTCCCGGGCGCGAGGACAATGACTAA