Gcaud9160.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9160.t1
Unique Name	Gcaud9160.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	486

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1047_length_14702_cov_4.831086	contig	NODE_1047_length_14702_cov_4.831086:1017..2474 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9160	Gcaud9160	Gracilaria caudata M_176_S67 male	gene	NODE_1047_length_14702_cov_4.831086 1017..2474 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9160.t1.start1	Gcaud9160.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1047_length_14702_cov_4.831086 1017..1019 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9160.t1.CDS1	Gcaud9160.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1047_length_14702_cov_4.831086 1017..2474 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9160.t1.exon1	Gcaud9160.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1047_length_14702_cov_4.831086 1017..2474 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9160.t1.stop1	Gcaud9160.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1047_length_14702_cov_4.831086 2472..2474 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9160.t1	Gcaud9160.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1047_length_14702_cov_4.831086 1017..2474 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1047_length_14702_cov_4.831086:1017..2474+
coding sequence from alignment at NODE_1047_length_14702_cov_4.831086:1017..2474+

mRNA sequence

>Gcaud9160.t1 ID=Gcaud9160.t1|Name=Gcaud9160.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=486bp
MVSKVHLEPNGSNQTPWGLCWADLFTELRPTHGETTAIECIVSQVEDLLK
NADLSHDLRPGGSFGKNTMMKGEHELRLYSIQHDFQPENYFEAHLKPILQ
AFKSEQRFVDLKESGYAAVFNSNGIQVRVYAAGTLYGGPKDLLLPPRSSE
KQSSDVLPDVARGHQLARDVHVETSCSVLRTQVIANQAPLYHDLVRVAKK
WRSTSDFMSRAETPGDYLLELLMLEAFTGAPCMPHGPELYGIVLRRFLSL
AATQCGSGSDVMADDSMPKSMLWWDKYYNRGVIDMCMAKGLLDVRRSDLC
SIIVVDPAVPFINVARSVPDWTEMRRCARDSLSSFQNTDLLDSLQDKVQA
LTEGMREAISGMQNQIESLQRLAKSPRRWTGVVQFNEVHMNSAAWTKVME
VELQTIPWRVYARKARTDGTGYMTCVDISLQMMGKKLGQTLEVDVSFRGG
TSSLIFDPNNDHVLICKRSEIVRNRDYAMQITVIG*

spliced messenger RNA

>Gcaud9160.t1 ID=Gcaud9160.t1|Name=Gcaud9160.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1458bp|location=Sequence derived from alignment at NODE_1047_length_14702_cov_4.831086:1017..2474+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTCCAAGGTACATTTAGAACCGAACGGATCAAACCAAACACCGTG
GGGTTTATGCTGGGCGGACCTTTTTACCGAACTCCGCCCAACCCATGGAG
AGACAACAGCCATCGAATGTATCGTTTCTCAAGTCGAAGACTTGCTCAAA
AACGCTGATCTCTCTCATGATCTTCGCCCCGGAGGCTCGTTTGGGAAGAA
TACAATGATGAAAGGCGAACACGAACTGCGCCTTTACTCGATTCAGCATG
ATTTTCAACCTGAGAACTATTTCGAAGCCCACCTCAAACCTATCCTTCAA
GCTTTCAAGTCAGAACAGCGATTTGTAGACCTGAAGGAGAGTGGTTACGC
TGCCGTATTTAACTCGAACGGAATTCAGGTTCGCGTATACGCTGCTGGGA
CGTTGTATGGGGGCCCGAAGGATTTGCTACTTCCGCCAAGGTCGAGCGAG
AAGCAATCATCGGACGTACTACCAGACGTTGCCCGGGGACATCAATTGGC
TCGTGATGTTCATGTGGAAACTAGTTGCTCCGTTCTGCGCACACAAGTTA
TCGCAAACCAAGCCCCTTTGTATCATGATCTCGTACGTGTTGCTAAGAAA
TGGAGGTCAACTAGCGACTTCATGTCCAGAGCAGAAACGCCCGGAGACTA
TTTGTTAGAACTGCTAATGCTCGAAGCTTTCACAGGTGCTCCATGCATGC
CGCATGGACCTGAGCTCTACGGTATTGTTCTTCGTCGTTTCTTATCTCTG
GCGGCCACACAGTGTGGTTCTGGGTCTGACGTAATGGCTGATGATAGTAT
GCCCAAGTCCATGTTGTGGTGGGATAAATACTATAATCGCGGGGTCATTG
ACATGTGCATGGCAAAGGGTTTGCTGGATGTACGACGCAGTGATCTATGT
TCTATTATCGTAGTTGACCCAGCTGTCCCCTTTATCAATGTTGCACGGTC
TGTGCCGGATTGGACGGAGATGAGGCGATGTGCTAGAGACAGCCTTAGCA
GCTTTCAAAACACTGACTTGCTGGATAGTCTGCAGGACAAGGTGCAGGCC
TTGACTGAAGGCATGCGTGAAGCCATCAGTGGCATGCAGAACCAAATTGA
ATCACTGCAACGGTTGGCAAAGTCCCCGAGGCGGTGGACAGGAGTTGTGC
AGTTTAATGAAGTGCACATGAATAGCGCAGCATGGACGAAGGTGATGGAA
GTTGAACTGCAGACAATTCCGTGGCGAGTGTATGCAAGAAAAGCCAGGAC
GGACGGCACAGGATATATGACTTGTGTTGACATCAGTTTGCAGATGATGG
GAAAGAAGCTTGGACAAACACTGGAAGTTGACGTGTCATTTAGAGGTGGG
ACGAGCAGTTTGATCTTCGATCCCAACAACGACCATGTATTGATCTGCAA
GCGCTCAGAGATTGTTAGAAATAGAGACTACGCGATGCAAATCACGGTCA
TTGGTTAA

protein sequence of Gcaud9160.t1

>Gcaud9160.t1 ID=Gcaud9160.t1|Name=Gcaud9160.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=486bp
MVSKVHLEPNGSNQTPWGLCWADLFTELRPTHGETTAIECIVSQVEDLLK
NADLSHDLRPGGSFGKNTMMKGEHELRLYSIQHDFQPENYFEAHLKPILQ
AFKSEQRFVDLKESGYAAVFNSNGIQVRVYAAGTLYGGPKDLLLPPRSSE
KQSSDVLPDVARGHQLARDVHVETSCSVLRTQVIANQAPLYHDLVRVAKK
WRSTSDFMSRAETPGDYLLELLMLEAFTGAPCMPHGPELYGIVLRRFLSL
AATQCGSGSDVMADDSMPKSMLWWDKYYNRGVIDMCMAKGLLDVRRSDLC
SIIVVDPAVPFINVARSVPDWTEMRRCARDSLSSFQNTDLLDSLQDKVQA
LTEGMREAISGMQNQIESLQRLAKSPRRWTGVVQFNEVHMNSAAWTKVME
VELQTIPWRVYARKARTDGTGYMTCVDISLQMMGKKLGQTLEVDVSFRGG
TSSLIFDPNNDHVLICKRSEIVRNRDYAMQITVIG*

mRNA from alignment at NODE_1047_length_14702_cov_4.831086:1017..2474+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9160.t1 ID=Gcaud9160.t1|Name=Gcaud9160.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1458bp|location=Sequence derived from alignment at NODE_1047_length_14702_cov_4.831086:1017..2474+ (Gracilaria caudata M_176_S67 male)
ATGGTGTCCAAGGTACATTTAGAACCGAACGGATCAAACCAAACACCGTG
GGGTTTATGCTGGGCGGACCTTTTTACCGAACTCCGCCCAACCCATGGAG
AGACAACAGCCATCGAATGTATCGTTTCTCAAGTCGAAGACTTGCTCAAA
AACGCTGATCTCTCTCATGATCTTCGCCCCGGAGGCTCGTTTGGGAAGAA
TACAATGATGAAAGGCGAACACGAACTGCGCCTTTACTCGATTCAGCATG
ATTTTCAACCTGAGAACTATTTCGAAGCCCACCTCAAACCTATCCTTCAA
GCTTTCAAGTCAGAACAGCGATTTGTAGACCTGAAGGAGAGTGGTTACGC
TGCCGTATTTAACTCGAACGGAATTCAGGTTCGCGTATACGCTGCTGGGA
CGTTGTATGGGGGCCCGAAGGATTTGCTACTTCCGCCAAGGTCGAGCGAG
AAGCAATCATCGGACGTACTACCAGACGTTGCCCGGGGACATCAATTGGC
TCGTGATGTTCATGTGGAAACTAGTTGCTCCGTTCTGCGCACACAAGTTA
TCGCAAACCAAGCCCCTTTGTATCATGATCTCGTACGTGTTGCTAAGAAA
TGGAGGTCAACTAGCGACTTCATGTCCAGAGCAGAAACGCCCGGAGACTA
TTTGTTAGAACTGCTAATGCTCGAAGCTTTCACAGGTGCTCCATGCATGC
CGCATGGACCTGAGCTCTACGGTATTGTTCTTCGTCGTTTCTTATCTCTG
GCGGCCACACAGTGTGGTTCTGGGTCTGACGTAATGGCTGATGATAGTAT
GCCCAAGTCCATGTTGTGGTGGGATAAATACTATAATCGCGGGGTCATTG
ACATGTGCATGGCAAAGGGTTTGCTGGATGTACGACGCAGTGATCTATGT
TCTATTATCGTAGTTGACCCAGCTGTCCCCTTTATCAATGTTGCACGGTC
TGTGCCGGATTGGACGGAGATGAGGCGATGTGCTAGAGACAGCCTTAGCA
GCTTTCAAAACACTGACTTGCTGGATAGTCTGCAGGACAAGGTGCAGGCC
TTGACTGAAGGCATGCGTGAAGCCATCAGTGGCATGCAGAACCAAATTGA
ATCACTGCAACGGTTGGCAAAGTCCCCGAGGCGGTGGACAGGAGTTGTGC
AGTTTAATGAAGTGCACATGAATAGCGCAGCATGGACGAAGGTGATGGAA
GTTGAACTGCAGACAATTCCGTGGCGAGTGTATGCAAGAAAAGCCAGGAC
GGACGGCACAGGATATATGACTTGTGTTGACATCAGTTTGCAGATGATGG
GAAAGAAGCTTGGACAAACACTGGAAGTTGACGTGTCATTTAGAGGTGGG
ACGAGCAGTTTGATCTTCGATCCCAACAACGACCATGTATTGATCTGCAA
GCGCTCAGAGATTGTTAGAAATAGAGACTACGCGATGCAAATCACGGTCA
TTGGTTAA

Coding sequence (CDS) from alignment at NODE_1047_length_14702_cov_4.831086:1017..2474+

>Gcaud9160.t1 ID=Gcaud9160.t1|Name=Gcaud9160.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1458bp|location=Sequence derived from alignment at NODE_1047_length_14702_cov_4.831086:1017..2474+ (Gracilaria caudata M_176_S67 male)
ATGGTGTCCAAGGTACATTTAGAACCGAACGGATCAAACCAAACACCGTG
GGGTTTATGCTGGGCGGACCTTTTTACCGAACTCCGCCCAACCCATGGAG
AGACAACAGCCATCGAATGTATCGTTTCTCAAGTCGAAGACTTGCTCAAA
AACGCTGATCTCTCTCATGATCTTCGCCCCGGAGGCTCGTTTGGGAAGAA
TACAATGATGAAAGGCGAACACGAACTGCGCCTTTACTCGATTCAGCATG
ATTTTCAACCTGAGAACTATTTCGAAGCCCACCTCAAACCTATCCTTCAA
GCTTTCAAGTCAGAACAGCGATTTGTAGACCTGAAGGAGAGTGGTTACGC
TGCCGTATTTAACTCGAACGGAATTCAGGTTCGCGTATACGCTGCTGGGA
CGTTGTATGGGGGCCCGAAGGATTTGCTACTTCCGCCAAGGTCGAGCGAG
AAGCAATCATCGGACGTACTACCAGACGTTGCCCGGGGACATCAATTGGC
TCGTGATGTTCATGTGGAAACTAGTTGCTCCGTTCTGCGCACACAAGTTA
TCGCAAACCAAGCCCCTTTGTATCATGATCTCGTACGTGTTGCTAAGAAA
TGGAGGTCAACTAGCGACTTCATGTCCAGAGCAGAAACGCCCGGAGACTA
TTTGTTAGAACTGCTAATGCTCGAAGCTTTCACAGGTGCTCCATGCATGC
CGCATGGACCTGAGCTCTACGGTATTGTTCTTCGTCGTTTCTTATCTCTG
GCGGCCACACAGTGTGGTTCTGGGTCTGACGTAATGGCTGATGATAGTAT
GCCCAAGTCCATGTTGTGGTGGGATAAATACTATAATCGCGGGGTCATTG
ACATGTGCATGGCAAAGGGTTTGCTGGATGTACGACGCAGTGATCTATGT
TCTATTATCGTAGTTGACCCAGCTGTCCCCTTTATCAATGTTGCACGGTC
TGTGCCGGATTGGACGGAGATGAGGCGATGTGCTAGAGACAGCCTTAGCA
GCTTTCAAAACACTGACTTGCTGGATAGTCTGCAGGACAAGGTGCAGGCC
TTGACTGAAGGCATGCGTGAAGCCATCAGTGGCATGCAGAACCAAATTGA
ATCACTGCAACGGTTGGCAAAGTCCCCGAGGCGGTGGACAGGAGTTGTGC
AGTTTAATGAAGTGCACATGAATAGCGCAGCATGGACGAAGGTGATGGAA
GTTGAACTGCAGACAATTCCGTGGCGAGTGTATGCAAGAAAAGCCAGGAC
GGACGGCACAGGATATATGACTTGTGTTGACATCAGTTTGCAGATGATGG
GAAAGAAGCTTGGACAAACACTGGAAGTTGACGTGTCATTTAGAGGTGGG
ACGAGCAGTTTGATCTTCGATCCCAACAACGACCATGTATTGATCTGCAA
GCGCTCAGAGATTGTTAGAAATAGAGACTACGCGATGCAAATCACGGTCA
TTGGTTAA