Gcaud1439.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1439.t1
Unique Name	Gcaud1439.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	258

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1627_length_9391_cov_4.808495	contig	NODE_1627_length_9391_cov_4.808495:622..1616 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1439	Gcaud1439	Gracilaria caudata M_176_S67 male	gene	NODE_1627_length_9391_cov_4.808495 622..1616 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1439.t1	Gcaud1439.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1627_length_9391_cov_4.808495 622..1616 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1439.t1.stop1	Gcaud1439.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1627_length_9391_cov_4.808495 622..624 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1439.t1.CDS1	Gcaud1439.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1627_length_9391_cov_4.808495 622..1117 -
Gcaud1439.t1.CDS2	Gcaud1439.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1627_length_9391_cov_4.808495 1339..1616 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1439.t1.exon1	Gcaud1439.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1627_length_9391_cov_4.808495 622..1117 -
Gcaud1439.t1.exon2	Gcaud1439.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1627_length_9391_cov_4.808495 1339..1616 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1439.t1.intron1	Gcaud1439.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1627_length_9391_cov_4.808495 1118..1338 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1439.t1.start1	Gcaud1439.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1627_length_9391_cov_4.808495 1614..1616 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1627_length_9391_cov_4.808495:622..1616-
coding sequence from alignment at NODE_1627_length_9391_cov_4.808495:622..1616-

mRNA sequence

>Gcaud1439.t1 ID=Gcaud1439.t1|Name=Gcaud1439.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=258bp
MNADVGVHIGHVADIYESSDSSHYDIEDLDRFDPRLSEKYYRNEIDITDV
IIPMNSSNNHRRVLLAREQSRDTWEMIWGDGLAVEFPKHRMDSWACARAR
VELIICSAVVKPQTAMMSNEFTMNSDHDAWRMRVFQSRLEREAKKNPKKK
VIRSDHEYPSSKLCKATPREPRNGRGGTRDPQESTRDPQGSTRDPQGSVT
ADGKHKAHIRDPSLRREERTGCKRRRLNDEQESGSKSNSSVADKPREAGK
PGPQTEV*

spliced messenger RNA

>Gcaud1439.t1 ID=Gcaud1439.t1|Name=Gcaud1439.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=774bp|location=Sequence derived from alignment at NODE_1627_length_9391_cov_4.808495:622..1616- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGCAGACGTAGGAGTTCATATCGGTCATGTTGCAGACATCTATGA
GTCTTCTGACAGTTCTCACTACGATATTGAAGATCTGGACCGTTTTGATC
CCAGGCTTTCAGAGAAATATTATCGAAATGAGATAGATATCACTGACGTG
ATCATTCCAATGAATAGTAGCAATAATCATCGACGTGTTTTGCTTGCGAG
AGAGCAAAGTCGAGATACGTGGGAAATGATATGGGGAGATGGTTTAGCGG
TTGAATTTCCAAAGCATCGTATGGATTCATGGGCGTGTGCTCGAGCCAGA
GTAGAATTGATTATTTGCAGCGCTGTTGTTAAGCCGCAAACCGCTATGAT
GTCCAACGAATTCACTATGAACAGTGATCATGATGCTTGGAGAATGAGGG
TGTTCCAGAGTCGTCTGGAGAGAGAAGCTAAGAAGAACCCAAAGAAAAAA
GTAATTCGTAGTGATCACGAATATCCTTCTTCGAAATTATGCAAAGCCAC
CCCAAGAGAACCACGCAATGGTCGAGGTGGTACTCGAGATCCTCAAGAAT
CTACGCGAGATCCCCAAGGATCTACGCGAGATCCTCAAGGATCTGTGACG
GCTGATGGAAAGCACAAAGCACATATCAGAGATCCATCTTTGCGTCGGGA
AGAAAGGACTGGGTGTAAGCGAAGACGGTTAAATGATGAACAAGAGTCCG
GCTCAAAGAGTAACTCTTCTGTCGCCGACAAGCCCCGGGAAGCAGGCAAG
CCAGGCCCACAAACTGAAGTGTAA

protein sequence of Gcaud1439.t1

>Gcaud1439.t1 ID=Gcaud1439.t1|Name=Gcaud1439.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=258bp
MNADVGVHIGHVADIYESSDSSHYDIEDLDRFDPRLSEKYYRNEIDITDV
IIPMNSSNNHRRVLLAREQSRDTWEMIWGDGLAVEFPKHRMDSWACARAR
VELIICSAVVKPQTAMMSNEFTMNSDHDAWRMRVFQSRLEREAKKNPKKK
VIRSDHEYPSSKLCKATPREPRNGRGGTRDPQESTRDPQGSTRDPQGSVT
ADGKHKAHIRDPSLRREERTGCKRRRLNDEQESGSKSNSSVADKPREAGK
PGPQTEV*

mRNA from alignment at NODE_1627_length_9391_cov_4.808495:622..1616-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1439.t1 ID=Gcaud1439.t1|Name=Gcaud1439.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=995bp|location=Sequence derived from alignment at NODE_1627_length_9391_cov_4.808495:622..1616- (Gracilaria caudata M_176_S67 male)
ATGAATGCAGACGTAGGAGTTCATATCGGTCATGTTGCAGACATCTATGA
GTCTTCTGACAGTTCTCACTACGATATTGAAGATCTGGACCGTTTTGATC
CCAGGCTTTCAGAGAAATATTATCGAAATGAGATAGATATCACTGACGTG
ATCATTCCAATGAATAGTAGCAATAATCATCGACGTGTTTTGCTTGCGAG
AGAGCAAAGTCGAGATACGTGGGAAATGATATGGGGAGATGGTTTAGCGG
TTGAATTTCCAAAGCATCGTATGGATTCGTCGCTGCAGCTATAAGCCATG
CTCTCTGTAGGAAGATATCATGGGTTTACAAATCAGAAAACTATATGCTA
CACACTCTCAAGTACACCAGGTAGCCTGATGGTTATAGTTGTGGAGCATA
TACCTTATTAATGATTTCGGAATTCTCGAAGACTCGAGGTTACATGCCAA
AATCTTCTTTCAAGGGGCCCTTCAATTTTTCTCTTACGGAAAGCTACAGA
TGGGCGTGTGCTCGAGCCAGAGTAGAATTGATTATTTGCAGCGCTGTTGT
TAAGCCGCAAACCGCTATGATGTCCAACGAATTCACTATGAACAGTGATC
ATGATGCTTGGAGAATGAGGGTGTTCCAGAGTCGTCTGGAGAGAGAAGCT
AAGAAGAACCCAAAGAAAAAAGTAATTCGTAGTGATCACGAATATCCTTC
TTCGAAATTATGCAAAGCCACCCCAAGAGAACCACGCAATGGTCGAGGTG
GTACTCGAGATCCTCAAGAATCTACGCGAGATCCCCAAGGATCTACGCGA
GATCCTCAAGGATCTGTGACGGCTGATGGAAAGCACAAAGCACATATCAG
AGATCCATCTTTGCGTCGGGAAGAAAGGACTGGGTGTAAGCGAAGACGGT
TAAATGATGAACAAGAGTCCGGCTCAAAGAGTAACTCTTCTGTCGCCGAC
AAGCCCCGGGAAGCAGGCAAGCCAGGCCCACAAACTGAAGTGTAA

Coding sequence (CDS) from alignment at NODE_1627_length_9391_cov_4.808495:622..1616-

>Gcaud1439.t1 ID=Gcaud1439.t1|Name=Gcaud1439.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=774bp|location=Sequence derived from alignment at NODE_1627_length_9391_cov_4.808495:622..1616- (Gracilaria caudata M_176_S67 male)
ATGAATGCAGACGTAGGAGTTCATATCGGTCATGTTGCAGACATCTATGA
GTCTTCTGACAGTTCTCACTACGATATTGAAGATCTGGACCGTTTTGATC
CCAGGCTTTCAGAGAAATATTATCGAAATGAGATAGATATCACTGACGTG
ATCATTCCAATGAATAGTAGCAATAATCATCGACGTGTTTTGCTTGCGAG
AGAGCAAAGTCGAGATACGTGGGAAATGATATGGGGAGATGGTTTAGCGG
TTGAATTTCCAAAGCATCGTATGGATTCATGGGCGTGTGCTCGAGCCAGA
GTAGAATTGATTATTTGCAGCGCTGTTGTTAAGCCGCAAACCGCTATGAT
GTCCAACGAATTCACTATGAACAGTGATCATGATGCTTGGAGAATGAGGG
TGTTCCAGAGTCGTCTGGAGAGAGAAGCTAAGAAGAACCCAAAGAAAAAA
GTAATTCGTAGTGATCACGAATATCCTTCTTCGAAATTATGCAAAGCCAC
CCCAAGAGAACCACGCAATGGTCGAGGTGGTACTCGAGATCCTCAAGAAT
CTACGCGAGATCCCCAAGGATCTACGCGAGATCCTCAAGGATCTGTGACG
GCTGATGGAAAGCACAAAGCACATATCAGAGATCCATCTTTGCGTCGGGA
AGAAAGGACTGGGTGTAAGCGAAGACGGTTAAATGATGAACAAGAGTCCG
GCTCAAAGAGTAACTCTTCTGTCGCCGACAAGCCCCGGGAAGCAGGCAAG
CCAGGCCCACAAACTGAAGTGTAA