Gcaud8561.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8561.t1
Unique Name	Gcaud8561.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	478

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_15_length_84509_cov_4.337096	contig	NODE_15_length_84509_cov_4.337096:17656..19089 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	195253.Syn6312_2255
Preferred name	ffh
PFAMs	SRP54,SRP54_N,SRP_SPB
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K03106
KEGG TC	3.A.5.1,3.A.5.2,3.A.5.7,3.A.5.8,3.A.5.9
KEGG Pathway	ko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG Module	M00335
Evalue	1.58e-163
EggNOG OGs	COG0541@1\|root,COG0541@2\|Bacteria,1FZYW@1117\|Cyanobacteria,1GZD6@1129\|Synechococcus
EC	3.6.5.4
Description	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
COG category	U
BRITE	ko00000,ko00001,ko00002,ko01000,ko02044

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8561	Gcaud8561	Gracilaria caudata M_176_S67 male	gene	NODE_15_length_84509_cov_4.337096 17656..19089 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8561.t1.stop1	Gcaud8561.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_15_length_84509_cov_4.337096 17656..17658 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8561.t1.CDS1	Gcaud8561.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_15_length_84509_cov_4.337096 17656..19089 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8561.t1.exon1	Gcaud8561.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_15_length_84509_cov_4.337096 17656..19089 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8561.t1.start1	Gcaud8561.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_15_length_84509_cov_4.337096 19087..19089 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8561.t1	Gcaud8561.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_15_length_84509_cov_4.337096 17656..19089 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_15_length_84509_cov_4.337096:17656..19089-
coding sequence from alignment at NODE_15_length_84509_cov_4.337096:17656..19089-

mRNA sequence

>Gcaud8561.t1 ID=Gcaud8561.t1|Name=Gcaud8561.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=478bp
MLFDSLTEKMEETVRRMRGVDKITEKNVAGAMKQVKRALLDADVNLRVVN
ALIKQIKQRAIGEEVTPGVEPGQMLIKIMHEELTAIMGKNQAPLARRTDG
KPTVVLLAGLQGAGKTTAAAKLALYCLKEKRSVMLIAGDVYRPAAIDQLK
TLGSSISVEVFSLGSEADPRDIVRKGVEKGVQDKIDTLIVDTAGRQVIDS
KLMKELKDIKTLSSADETLLVVDAMTGQEAATLTKSFNAEVGITGAILTK
LDGDTRGGAALSVQQVSGAPIKFTGVGEQVEKLQPFIPERMASRILGMGD
VLTFVEKAQEQMDEKEAERMTKRMMEAKFDFNDFLSQTKTISTMGSLAGV
MKMLPGVGSISSEKMAQAEAKLKLADSLIKSMTIQERTNPELLYSGGSAR
SRLSRISKGAGRSRNEAEDLVSDFRKMRDMMSRMSNQMLNGTGGPDGAPG
QAIGNRSQRRKAGKKKAQKKTAKRGFG*

spliced messenger RNA

>Gcaud8561.t1 ID=Gcaud8561.t1|Name=Gcaud8561.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1434bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:17656..19089- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTTCGATTCTTTAACAGAGAAGATGGAAGAAACAGTCAGGAGAAT
GCGAGGCGTCGATAAGATCACAGAAAAGAACGTGGCAGGGGCAATGAAAC
AAGTCAAACGCGCGTTGCTAGATGCCGATGTCAACTTGCGGGTTGTGAAT
GCATTAATCAAGCAGATAAAACAAAGAGCTATTGGAGAAGAGGTAACCCC
TGGTGTTGAGCCTGGTCAAATGTTGATCAAGATCATGCACGAAGAATTGA
CGGCTATAATGGGAAAGAACCAGGCACCGCTTGCGAGAAGAACAGACGGG
AAACCAACTGTTGTCTTGTTAGCTGGTCTGCAGGGAGCTGGAAAGACTAC
TGCCGCAGCCAAACTCGCACTATACTGCTTAAAGGAGAAACGCTCAGTTA
TGCTGATCGCAGGTGATGTGTACAGACCCGCTGCAATTGACCAGCTGAAG
ACTTTAGGAAGTTCAATTAGTGTCGAAGTCTTTAGCCTGGGCTCGGAGGC
AGATCCAAGAGACATTGTCCGGAAGGGGGTTGAGAAAGGTGTGCAAGACA
AGATTGATACTCTTATTGTCGATACCGCGGGGCGTCAGGTAATTGATTCG
AAACTCATGAAAGAATTGAAAGACATCAAGACACTCAGCAGTGCAGATGA
AACACTACTCGTTGTAGATGCAATGACTGGGCAAGAAGCAGCAACGCTAA
CTAAGTCTTTTAACGCCGAAGTTGGCATCACGGGAGCAATTCTCACCAAG
CTTGACGGCGACACTCGAGGTGGTGCGGCCTTATCAGTGCAACAGGTCTC
AGGTGCTCCAATTAAGTTCACTGGTGTTGGCGAACAAGTAGAAAAACTGC
AACCTTTCATTCCAGAACGTATGGCTTCGAGAATTCTAGGAATGGGAGAT
GTTCTCACATTCGTGGAGAAAGCACAGGAGCAAATGGATGAAAAAGAAGC
GGAACGGATGACAAAACGAATGATGGAAGCTAAATTTGATTTTAACGATT
TCCTTAGCCAAACAAAGACGATCTCTACTATGGGTTCACTTGCTGGCGTG
ATGAAGATGTTGCCAGGTGTTGGATCAATATCTTCGGAGAAGATGGCGCA
AGCAGAAGCGAAACTGAAGCTTGCCGACAGTCTGATCAAATCTATGACCA
TTCAAGAACGCACGAATCCGGAACTTCTTTATTCAGGTGGTTCCGCTCGC
AGCAGATTATCGCGAATATCCAAAGGTGCGGGGAGATCAAGGAATGAGGC
AGAGGACTTGGTTAGCGATTTTAGGAAAATGAGGGATATGATGTCGCGAA
TGAGCAATCAAATGCTCAACGGTACGGGTGGTCCAGACGGCGCACCGGGT
CAAGCAATAGGAAACAGATCACAACGAAGGAAGGCCGGTAAGAAAAAGGC
TCAGAAGAAAACTGCGAAGCGTGGCTTTGGTTAA

protein sequence of Gcaud8561.t1

>Gcaud8561.t1 ID=Gcaud8561.t1|Name=Gcaud8561.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=478bp
MLFDSLTEKMEETVRRMRGVDKITEKNVAGAMKQVKRALLDADVNLRVVN
ALIKQIKQRAIGEEVTPGVEPGQMLIKIMHEELTAIMGKNQAPLARRTDG
KPTVVLLAGLQGAGKTTAAAKLALYCLKEKRSVMLIAGDVYRPAAIDQLK
TLGSSISVEVFSLGSEADPRDIVRKGVEKGVQDKIDTLIVDTAGRQVIDS
KLMKELKDIKTLSSADETLLVVDAMTGQEAATLTKSFNAEVGITGAILTK
LDGDTRGGAALSVQQVSGAPIKFTGVGEQVEKLQPFIPERMASRILGMGD
VLTFVEKAQEQMDEKEAERMTKRMMEAKFDFNDFLSQTKTISTMGSLAGV
MKMLPGVGSISSEKMAQAEAKLKLADSLIKSMTIQERTNPELLYSGGSAR
SRLSRISKGAGRSRNEAEDLVSDFRKMRDMMSRMSNQMLNGTGGPDGAPG
QAIGNRSQRRKAGKKKAQKKTAKRGFG*

mRNA from alignment at NODE_15_length_84509_cov_4.337096:17656..19089-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8561.t1 ID=Gcaud8561.t1|Name=Gcaud8561.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1434bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:17656..19089- (Gracilaria caudata M_176_S67 male)
ATGCTCTTCGATTCTTTAACAGAGAAGATGGAAGAAACAGTCAGGAGAAT
GCGAGGCGTCGATAAGATCACAGAAAAGAACGTGGCAGGGGCAATGAAAC
AAGTCAAACGCGCGTTGCTAGATGCCGATGTCAACTTGCGGGTTGTGAAT
GCATTAATCAAGCAGATAAAACAAAGAGCTATTGGAGAAGAGGTAACCCC
TGGTGTTGAGCCTGGTCAAATGTTGATCAAGATCATGCACGAAGAATTGA
CGGCTATAATGGGAAAGAACCAGGCACCGCTTGCGAGAAGAACAGACGGG
AAACCAACTGTTGTCTTGTTAGCTGGTCTGCAGGGAGCTGGAAAGACTAC
TGCCGCAGCCAAACTCGCACTATACTGCTTAAAGGAGAAACGCTCAGTTA
TGCTGATCGCAGGTGATGTGTACAGACCCGCTGCAATTGACCAGCTGAAG
ACTTTAGGAAGTTCAATTAGTGTCGAAGTCTTTAGCCTGGGCTCGGAGGC
AGATCCAAGAGACATTGTCCGGAAGGGGGTTGAGAAAGGTGTGCAAGACA
AGATTGATACTCTTATTGTCGATACCGCGGGGCGTCAGGTAATTGATTCG
AAACTCATGAAAGAATTGAAAGACATCAAGACACTCAGCAGTGCAGATGA
AACACTACTCGTTGTAGATGCAATGACTGGGCAAGAAGCAGCAACGCTAA
CTAAGTCTTTTAACGCCGAAGTTGGCATCACGGGAGCAATTCTCACCAAG
CTTGACGGCGACACTCGAGGTGGTGCGGCCTTATCAGTGCAACAGGTCTC
AGGTGCTCCAATTAAGTTCACTGGTGTTGGCGAACAAGTAGAAAAACTGC
AACCTTTCATTCCAGAACGTATGGCTTCGAGAATTCTAGGAATGGGAGAT
GTTCTCACATTCGTGGAGAAAGCACAGGAGCAAATGGATGAAAAAGAAGC
GGAACGGATGACAAAACGAATGATGGAAGCTAAATTTGATTTTAACGATT
TCCTTAGCCAAACAAAGACGATCTCTACTATGGGTTCACTTGCTGGCGTG
ATGAAGATGTTGCCAGGTGTTGGATCAATATCTTCGGAGAAGATGGCGCA
AGCAGAAGCGAAACTGAAGCTTGCCGACAGTCTGATCAAATCTATGACCA
TTCAAGAACGCACGAATCCGGAACTTCTTTATTCAGGTGGTTCCGCTCGC
AGCAGATTATCGCGAATATCCAAAGGTGCGGGGAGATCAAGGAATGAGGC
AGAGGACTTGGTTAGCGATTTTAGGAAAATGAGGGATATGATGTCGCGAA
TGAGCAATCAAATGCTCAACGGTACGGGTGGTCCAGACGGCGCACCGGGT
CAAGCAATAGGAAACAGATCACAACGAAGGAAGGCCGGTAAGAAAAAGGC
TCAGAAGAAAACTGCGAAGCGTGGCTTTGGTTAA

Coding sequence (CDS) from alignment at NODE_15_length_84509_cov_4.337096:17656..19089-

>Gcaud8561.t1 ID=Gcaud8561.t1|Name=Gcaud8561.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1434bp|location=Sequence derived from alignment at NODE_15_length_84509_cov_4.337096:17656..19089- (Gracilaria caudata M_176_S67 male)
ATGCTCTTCGATTCTTTAACAGAGAAGATGGAAGAAACAGTCAGGAGAAT
GCGAGGCGTCGATAAGATCACAGAAAAGAACGTGGCAGGGGCAATGAAAC
AAGTCAAACGCGCGTTGCTAGATGCCGATGTCAACTTGCGGGTTGTGAAT
GCATTAATCAAGCAGATAAAACAAAGAGCTATTGGAGAAGAGGTAACCCC
TGGTGTTGAGCCTGGTCAAATGTTGATCAAGATCATGCACGAAGAATTGA
CGGCTATAATGGGAAAGAACCAGGCACCGCTTGCGAGAAGAACAGACGGG
AAACCAACTGTTGTCTTGTTAGCTGGTCTGCAGGGAGCTGGAAAGACTAC
TGCCGCAGCCAAACTCGCACTATACTGCTTAAAGGAGAAACGCTCAGTTA
TGCTGATCGCAGGTGATGTGTACAGACCCGCTGCAATTGACCAGCTGAAG
ACTTTAGGAAGTTCAATTAGTGTCGAAGTCTTTAGCCTGGGCTCGGAGGC
AGATCCAAGAGACATTGTCCGGAAGGGGGTTGAGAAAGGTGTGCAAGACA
AGATTGATACTCTTATTGTCGATACCGCGGGGCGTCAGGTAATTGATTCG
AAACTCATGAAAGAATTGAAAGACATCAAGACACTCAGCAGTGCAGATGA
AACACTACTCGTTGTAGATGCAATGACTGGGCAAGAAGCAGCAACGCTAA
CTAAGTCTTTTAACGCCGAAGTTGGCATCACGGGAGCAATTCTCACCAAG
CTTGACGGCGACACTCGAGGTGGTGCGGCCTTATCAGTGCAACAGGTCTC
AGGTGCTCCAATTAAGTTCACTGGTGTTGGCGAACAAGTAGAAAAACTGC
AACCTTTCATTCCAGAACGTATGGCTTCGAGAATTCTAGGAATGGGAGAT
GTTCTCACATTCGTGGAGAAAGCACAGGAGCAAATGGATGAAAAAGAAGC
GGAACGGATGACAAAACGAATGATGGAAGCTAAATTTGATTTTAACGATT
TCCTTAGCCAAACAAAGACGATCTCTACTATGGGTTCACTTGCTGGCGTG
ATGAAGATGTTGCCAGGTGTTGGATCAATATCTTCGGAGAAGATGGCGCA
AGCAGAAGCGAAACTGAAGCTTGCCGACAGTCTGATCAAATCTATGACCA
TTCAAGAACGCACGAATCCGGAACTTCTTTATTCAGGTGGTTCCGCTCGC
AGCAGATTATCGCGAATATCCAAAGGTGCGGGGAGATCAAGGAATGAGGC
AGAGGACTTGGTTAGCGATTTTAGGAAAATGAGGGATATGATGTCGCGAA
TGAGCAATCAAATGCTCAACGGTACGGGTGGTCCAGACGGCGCACCGGGT
CAAGCAATAGGAAACAGATCACAACGAAGGAAGGCCGGTAAGAAAAAGGC
TCAGAAGAAAACTGCGAAGCGTGGCTTTGGTTAA